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GO:0006284

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Base-excision repair
Full defintion In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
Subterm of

Relationships

The relationship of GO:0006284 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
ISBN

· ISBN: 0815316194

, · pages

Associated Lotus transcripts 57

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0050369.1
– PREDICTED: probable GMP synthase [glutamine]-hydrolyzing] gi|502155079|ref|XP_004509952.1|
GO terms
2
Lj0g3v0121289.1
– DNA glycosylase superfamily protein [Arabidopsis thaliana] gi|42572315|ref|NP_974253.1|
GO terms
1
Lj0g3v0134359.1
– PREDICTED: N-glycosylase/DNA lyase OGG1-like isoform X1 [Cicer arietinum] gi|502135915|ref|XP_004502497.1|
GO terms
1
Lj0g3v0164319.1
– PREDICTED: probable GMP synthase [glutamine]-hydrolyzing] gi|356525726|ref|XP_003531474.1|
GO terms
2
Lj0g3v0207679.1
– DNA glycosylase superfamily protein [Arabidopsis thaliana] gi|42572315|ref|NP_974253.1|
GO terms
1
Lj0g3v0257719.1
– DNA glycosylase superfamily protein [Arabidopsis thaliana] gi|42572315|ref|NP_974253.1|
GO terms
1
Lj0g3v0274889.1
– PREDICTED: probable GMP synthase [glutamine]-hydrolyzing] gi|356516982|ref|XP_003527169.1|
GO terms
2
Lj1g3v4361120.1
– PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Cicer arietinum] gi|502109262|ref|XP_004493604.1|
GO terms
3
Lj1g3v4695520.1
– PREDICTED: protein ROS1-like [Glycine max] gi|356503779|ref|XP_003520681.1|
GO terms
1
Lj1g3v4695520.3
– PREDICTED: protein ROS1-like [Glycine max] gi|356503779|ref|XP_003520681.1|
GO terms
1
Lj3g3v0044230.1
– PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X2 [Cicer arietinum] gi|502080701|ref|XP_004486650.1|
GO terms
5
Lj3g3v0044230.2
– PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502080698|ref|XP_004486649.1|
GO terms
5
Lj3g3v0392790.1
– PREDICTED: probable GMP synthase [glutamine]-hydrolyzing] gi|356557064|ref|XP_003546838.1|
GO terms
2
Lj3g3v0938140.1
– PREDICTED: probable GMP synthase [glutamine]-hydrolyzing] gi|356525726|ref|XP_003531474.1|
GO terms
2
Lj3g3v2098140.1
– PREDICTED: probable GMP synthase [glutamine]-hydrolyzing] gi|356523269|ref|XP_003530263.1|
GO terms
2
Lj3g3v2389760.1
– PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502157003|ref|XP_004510725.1|
GO terms
1
Lj3g3v2389760.2
– PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X2 [Cicer arietinum] gi|502157006|ref|XP_004510726.1|
GO terms
1
Lj3g3v2389760.3
– PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502157003|ref|XP_004510725.1|
GO terms
1
Lj3g3v3302770.1
– PREDICTED: endonuclease III-like protein 1-like [Cicer arietinum] gi|502148937|ref|XP_004507328.1|
GO terms
2
Lj3g3v3511350.1
– PREDICTED: uracil-DNA glycosylase-like [Glycine max] gi|356544588|ref|XP_003540731.1|
GO terms
3
Lj3g3v3511350.2
– PREDICTED: uracil-DNA glycosylase-like [Glycine max] gi|356544588|ref|XP_003540731.1|
GO terms
3
Lj4g3v0071130.1
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508778582|gb|EOY25838.1|
GO terms
1
Lj5g3v2297820.1
– PREDICTED: probable GMP synthase [glutamine]-hydrolyzing] gi|502131600|ref|XP_004501037.1|
GO terms
2
Lj5g3v2298120.1
– PREDICTED: DNA-3-methyladenine glycosylase 1-like isoform X1 [Cicer arietinum] gi|502131517|ref|XP_004501010.1|
GO terms
1
Lj6g3v1078250.1
– PREDICTED: probable GMP synthase [glutamine]-hydrolyzing] gi|356516982|ref|XP_003527169.1|
GO terms
2
LotjaGi1g1v0263300.1
– N-glycosylase/DNA lyase; TAIR: AT1G21710.1 8-oxoguanine-DNA glycosylase 1; Swiss-Prot: sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1; TrEMBL-Plants: tr|A0A0S3RDM0|A0A0S3RDM0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0263300
GO terms
1
LotjaGi1g1v0279000.1
– DNA-3-methyladenine glycosylase; TAIR: AT3G12040.1 DNA-3-methyladenine glycosylase (MAG); Swiss-Prot: sp|Q39147|3MG_ARATH DNA-3-methyladenine glycosylase; TrEMBL-Plants: tr|I1N9A6|I1N9A6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0279000
GO terms
3
LotjaGi1g1v0417900.1
– DNA-3-methyladenine glycosylase, putative; TAIR: AT1G75090.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr|A0A072VD87|A0A072VD87_MEDTR DNA-3-methyladenine glycosylase I; Found in the gene: LotjaGi1g1v0417900
GO terms
2
LotjaGi1g1v0419500.1
– DNA-3-methyladenine glycosylase 1; TAIR: AT1G19480.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q92383|MAG1_SCHPO DNA-3-methyladenine glycosylase 1; TrEMBL-Plants: tr|I1JTA6|I1JTA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0419500
GO terms
1
LotjaGi1g1v0679900.1
– DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|A0A0B2QF73|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900
GO terms
1
LotjaGi1g1v0679900.2
– DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|A0A0B2QF73|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900
GO terms
1
LotjaGi1g1v0679900.3
– DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|A0A0B2QF73|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900
GO terms
1
LotjaGi2g1v0026200_LC.1
– Methyl-CpG-binding domain protein 4; TAIR: AT3G07930.3 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q0IGK1|MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein; TrEMBL-Plants: tr|V4SJG7|V4SJG7_9ROSI Uncharacterized protein; Found in the gene: LotjaGi2g1v0026200_LC
GO terms
1
LotjaGi2g1v0026300_LC.1
– Photosystem II CP47 reaction center protein; TAIR: AT3G07930.3 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q0IGK1|MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein; TrEMBL-Plants: tr|K7LYE7|K7LYE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0026300_LC
GO terms
1
LotjaGi2g1v0026500_LC.3
– Methyl-CpG-binding domain protein 4; TAIR: AT3G07930.3 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q0IGK1|MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein; TrEMBL-Plants: tr|W9QY11|W9QY11_9ROSA Methyl-CpG-binding domain protein 4; Found in the gene: LotjaGi2g1v0026500_LC
GO terms
1
LotjaGi2g1v0026500_LC.4
– Methyl-CpG-binding domain protein 4; TAIR: AT3G07930.3 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q0IGK1|MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein; TrEMBL-Plants: tr|A0A151SQL7|A0A151SQL7_CAJCA Methyl-CpG-binding domain protein 4; Found in the gene: LotjaGi2g1v0026500_LC
GO terms
1
LotjaGi2g1v0156400_LC.34
– Transcriptional activator DEMETER; TAIR: AT3G10010.1 demeter-like 2; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0B2NV47|A0A0B2NV47_GLYSO Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC
GO terms
1
LotjaGi2g1v0156400_LC.37
– Transcriptional activator DEMETER; TAIR: AT3G10010.1 demeter-like 2; Swiss-Prot: sp|Q9SR66|DML2_ARATH DEMETER-like protein 2; TrEMBL-Plants: tr|A0A0B2NV47|A0A0B2NV47_GLYSO Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC
GO terms
1
LotjaGi2g1v0156400_LC.6
– Transcriptional activator DEMETER; TAIR: AT3G10010.1 demeter-like 2; Swiss-Prot: sp|Q9SR66|DML2_ARATH DEMETER-like protein 2; TrEMBL-Plants: tr|A0A0B2NV47|A0A0B2NV47_GLYSO Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC
GO terms
1
LotjaGi2g1v0389900.1
– DNA-3-methyladenine glycosylase 1; TAIR: AT1G75230.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2; TrEMBL-Plants: tr|G7KDL7|G7KDL7_MEDTR HhH-GPD base excision DNA repair family protein; Found in the gene: LotjaGi2g1v0389900
GO terms
1
LotjaGi2g1v0389900.2
– DNA-3-methyladenine glycosylase 1; TAIR: AT1G75230.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2; TrEMBL-Plants: tr|G7KDL7|G7KDL7_MEDTR HhH-GPD base excision DNA repair family protein; Found in the gene: LotjaGi2g1v0389900
GO terms
1
LotjaGi2g1v0389900.3
– DNA-3-methyladenine glycosylase 1; TAIR: AT1G75230.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2; TrEMBL-Plants: tr|G7KDL7|G7KDL7_MEDTR HhH-GPD base excision DNA repair family protein; Found in the gene: LotjaGi2g1v0389900
GO terms
1
LotjaGi3g1v0007500.1
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
GO terms
5
LotjaGi3g1v0007500.2
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|G7II90|G7II90_MEDTR Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
GO terms
5
LotjaGi3g1v0007500.3
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.1 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
GO terms
5
LotjaGi3g1v0034200.1
– DNA-3-methyladenine glycosylase, putative; TAIR: AT3G12710.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr|V7AJL3|V7AJL3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0034200
GO terms
2
LotjaGi3g1v0131600.1
– DNA-3-methyladenine glycosylase, putative; TAIR: AT3G12710.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr|A0A0L9UJ98|A0A0L9UJ98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0131600
GO terms
2
LotjaGi3g1v0349700.1
– DNA-3-methyladenine glycosylase, putative; TAIR: AT5G57970.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr|I1KGT2|I1KGT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0349700
GO terms
2
LotjaGi3g1v0391200.2
– A/G-specific adenine DNA glycosylase; TAIR: AT4G12740.2 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase; TrEMBL-Plants: tr|K7KZX6|K7KZX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0391200
GO terms
1
LotjaGi3g1v0391200.3
– A/G-specific adenine DNA glycosylase; TAIR: AT4G12740.2 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase; TrEMBL-Plants: tr|A0A0R0J018|A0A0R0J018_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0391200
GO terms
1
LotjaGi3g1v0497800.1
– Endonuclease III homolog; TAIR: AT2G31450.2 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q9SIC4|NTH1_ARATH Endonuclease III homolog 1, chloroplastic; TrEMBL-Plants: tr|A0A0L9V790|A0A0L9V790_PHAAN Endonuclease III homolog; Found in the gene: LotjaGi3g1v0497800
GO terms
1
LotjaGi4g1v0168200.1
– DNA-3-methyladenine glycosylase, putative; TAIR: AT1G13635.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1; TrEMBL-Plants: tr|I3S202|I3S202_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0168200
GO terms
2
LotjaGi4g1v0168200.2
– DNA-3-methyladenine glycosylase, putative; TAIR: AT1G13635.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr|I3S202|I3S202_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0168200
GO terms
2
LotjaGi4g1v0237800.1
– DNA glycosylase; TAIR: AT3G47830.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|F4JCQ3|DG783_ARATH Putative DNA glycosylase At3g47830; TrEMBL-Plants: tr|A0A151QT39|A0A151QT39_CAJCA Protein ROS1; Found in the gene: LotjaGi4g1v0237800
GO terms
1
LotjaGi5g1v0090900_LC.1
– DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|K7LHS4|K7LHS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0090900_LC
GO terms
1
LotjaGi6g1v0203700.1
– DNA-3-methyladenine glycosylase, putative; TAIR: AT5G57970.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr|K7KWJ8|K7KWJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0203700
GO terms
2
LotjaGi6g1v0277400.1
– DNA glycosylase; TAIR: AT4G26030.1 C2H2-like zinc finger protein; Swiss-Prot: sp|O31544|YFJP_BACSU Putative DNA-3-methyladenine glycosylase YfjP; TrEMBL-Plants: tr|A0A0B2S7Q6|A0A0B2S7Q6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0277400
GO terms
1

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006284
Biological process Base-excision repair 1 1.75