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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0398600 |
| Transcript ID | LotjaGi2g1v0398600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G51280.1 DEAD-box protein abstrakt; Swiss-Prot: sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35; TrEMBL-Plants: tr|A0A151TW33|A0A151TW33_CAJCA DEAD-box ATP-dependent RNA helicase 35; Found in the gene: LotjaGi2g1v0398600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89572442..89575878) extracted from Lotus japonicus Gifu genome v1.2.
CAACATTTCAACTTGATTAATTTAACCATTGGTAAACTGGTGTTTGTTCATTTTGTAAACCCCTCAATCCTCATCCCCGA TTCATCAAATCAAAGAGGGACAAAACCTAAGTCCCCAATACCCCTGCGTCGCGTCGCGCTCTCTGTCAAACCACTCATCG TCGTTCGCCGTCACCGCCTTTCGTTGGAGGCTCGTCACTGCACTTCATTCACACCGACTAGGTATTCTTGGTTCTTATCT CTCATCTTCTCTCTCACTTCAATCGTGATTTTTAGTTTCACACCGTTGTGCAATTCTCTGTTGATTTTTTTCCACATCGT GAGCTTGATGTTGATTTTGAGATCTGTTCTGAACTGTATGATTGTGAGCTTGAAGCTAAGTTTGAGATTCAGATTGCATA TACCTTAAGCAAGTGCAACTTATTATGAACTTGTCATCTTTTAATTGGTTTTGGTACTAGTTTTTTCTCAACCTGATAAT TTGTTGATATTGTGATTATGCTTAACAACAATAATTTATTAAATTTTGGATGCCACAAGAAATTTTATTTTCATATTCAT TGAGTAGTAGCAGGGTTGTTAATGGTGGATAGCGTAGTGTAGCGGCAAGCCCAAAAAACGCTATTTCGAGCGCTATAGCG GCAAATAGTGGTGAATAGTGGAGTAGCGGTGAAACCCCAGGGCGCTACGCTATAGCGCTATTAACAAGCCTGAGTAGCAC ATTCTGCAATTTATTGACTGATATGTTAGGGTTCATTCCACCCTCCTCGTCCTTCCTTATACTCTTCTATGACTGAATAT GCAATATAAATATCACACCATGGAGAAATAGGCATGCCTGAGTGAAGTTACTGTTTTGCCTGATTTTTTAGTATTTGTTA TATGTTAAGAGTACACTGATGTTGCATTTGGAAACTTGTTGGAATATAGTGTGTAAAATCCACTGCTAGTGACTCAAATT GAAAGAATGCATTTTTGGGATATATATATTTTACACCTTTGTTGCATTCCTTACTTGGGATTTAAATTTTCTTTGAAATG CATATAGGATAAAAAAGCTGTTATTATGAGCTCGGAGGTAGCAAAAATGGAAGAAGAAGAAGATGATTATGAGGAATATA TTCCTGTGGCCAAGCGTCGGCTCATGGAAGCTCAGAAGATTCTCCAACGCAAAGGGAAGGCCTCTGCTGTCATTGACGAG GAGTTGGAGAAATTAAGAGTAGCAGCTGAAGCTAAGCCGAGTCTTCTGGTTAAGGCATCACAGTTGAAAAAAGATCAACC CGAGATCAGTGCGACAGAGCAGATTGTTCAACAGGAGAAGGAGATGATTGAAAACTTGTCGGACAGAAAAACCCTTATGT CTGTTCGTGAATTAGCTAAGGGGATCACTTATACAGAACCTTTGCTCACAGGGTGGAAGCCGCCTTTGCATATAAGAAGG ATGTCAAAGAAGGAATGTGATTTGATTCGAAAACAGTGGCATATAATAGTTGATGGTGGAGATATCCCGCCTCCAATTAA GAATTTTAAGGATATGAGATTTCCAGAGCCAATTTTGAAGATGTTGAAAACTAAGGGGATTGTGCAACCAACACCTATTC AGGTGCAAGGTCTTCCTGTTATCTTATCAGGGCGGGATATGATTGGGATTGCTTTCACGGGTTCTGGAAAAACTCTGGTC TTTGTGCTGCCAATGATCATGGTGGCAATGCAGGAGGAAATTATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTT AATTATTTGCCCATCAAGAGAACTGGCTAGGCAAACTTTTGATGTGGTTGAAGAGTTCTTGATACCTATGAAGGAAGCTG GATATCCAGAGATCAGACCCTTGCTTTGTATTGGTGGAGTGGATATGAGATCACAGCTTGAGATCGTGAAGAAAGGTGTT CACATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTT AACATTAGATGAGGCTGATCGATTGGTGGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGACCATTTTAAAGCTC AAAGGCAGACTCTTCTATTTTCTGCCACTATGCCAACCAAAATCCAGAACTTTGCTAGAAGCGCTTTGGTAAAACCTATC ATGGTCAATGTGGGACGTGCAGGGGCAGCCAATCTGGATGTAATTCAGGAGGTAGAGTATGTTAAACAAGAGGCAAAGAT AGTTTACCTACTTGAGTGCCTACAAAAAACCCCACCTCCTGTTCTAATATTCTGTGAGAACAAGGCTGATGTCGATGACA TTCATGAATATCTTCTGTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCC ATTTCATCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACCGATGTTGCATCCAAAGGTTTGGATTTTCCTGATAT TCAGCATGTCATCAACTATGACATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGAAGGACTGGAAGATGTGGCA AAACTGGGATAGCAACAACATTCATCAACAAGAATCAATCTCCCACAACATTACTTGATTTAAAGCACCTCTTGCAAGAA GCAAAGCAAAGGATTCCCCCAGTTTTGGCCGAGCTGAGTGATCCAATGGAAGACAATGAAGCAATCACAGACATAAGTGG GGTCAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGTGATTGTCCCAAATTAGAACATCAGAAGAGCATGG CAATTGCAAACAATAGACATGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGAAAAGTATGGCTCTTTTGTTTA ACCAAGTTTTCTTTTATGGGTTATGCATTGTATCTGCAGTTTTAAAATCTTATCCCATGAAACCTAGTTAATCACTTTAA TTAGATTTGTACTGTTGGGTTGGATATGTACCGAATTTTCTTCTAACACTAATGGGCAATGTATTATATATCCTGCTGCC TTTAAATTTTATATCAAGAAATCTAATGAATTTCATGACATTTGTAGAATCATTTTCTCCTGTTTGCCCTAGTCTAGGAT GATTCATATTGAAGTAGAGTAGCCCACTCAGGACTCATATTGTAAGTCAGGAACGGATGCCTTCTGCTCTGGTGATTGTT TTCCTTTAATGTAATGTTTATGTTACGAACTTACGATCTTGTTATGGGACATTGTCACTTCGCCATATTTAAATCCAATT TTGATTTTCAATAACTAACGGTATCTAACCTACTACTCTAAGTAATCATGATATATTATCTATTAGTGGAAAGGGAGCTT ATCATCAACCAGGTGTAGCACAACTGGTAGATAGTTGGACTCCTTAACCATCTGCTACACCTGGTAGATAGTTGGAC
CDS sequence (LotjaGi2g1v0398600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTCGGAGGTAGCAAAAATGGAAGAAGAAGAAGATGATTATGAGGAATATATTCCTGTGGCCAAGCGTCGGCTCAT GGAAGCTCAGAAGATTCTCCAACGCAAAGGGAAGGCCTCTGCTGTCATTGACGAGGAGTTGGAGAAATTAAGAGTAGCAG CTGAAGCTAAGCCGAGTCTTCTGGTTAAGGCATCACAGTTGAAAAAAGATCAACCCGAGATCAGTGCGACAGAGCAGATT GTTCAACAGGAGAAGGAGATGATTGAAAACTTGTCGGACAGAAAAACCCTTATGTCTGTTCGTGAATTAGCTAAGGGGAT CACTTATACAGAACCTTTGCTCACAGGGTGGAAGCCGCCTTTGCATATAAGAAGGATGTCAAAGAAGGAATGTGATTTGA TTCGAAAACAGTGGCATATAATAGTTGATGGTGGAGATATCCCGCCTCCAATTAAGAATTTTAAGGATATGAGATTTCCA GAGCCAATTTTGAAGATGTTGAAAACTAAGGGGATTGTGCAACCAACACCTATTCAGGTGCAAGGTCTTCCTGTTATCTT ATCAGGGCGGGATATGATTGGGATTGCTTTCACGGGTTCTGGAAAAACTCTGGTCTTTGTGCTGCCAATGATCATGGTGG CAATGCAGGAGGAAATTATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTAATTATTTGCCCATCAAGAGAACTG GCTAGGCAAACTTTTGATGTGGTTGAAGAGTTCTTGATACCTATGAAGGAAGCTGGATATCCAGAGATCAGACCCTTGCT TTGTATTGGTGGAGTGGATATGAGATCACAGCTTGAGATCGTGAAGAAAGGTGTTCACATTGTTGTTGCCACTCCTGGGA GGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACATTAGATGAGGCTGATCGATTG GTGGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGACCATTTTAAAGCTCAAAGGCAGACTCTTCTATTTTCTGC CACTATGCCAACCAAAATCCAGAACTTTGCTAGAAGCGCTTTGGTAAAACCTATCATGGTCAATGTGGGACGTGCAGGGG CAGCCAATCTGGATGTAATTCAGGAGGTAGAGTATGTTAAACAAGAGGCAAAGATAGTTTACCTACTTGAGTGCCTACAA AAAACCCCACCTCCTGTTCTAATATTCTGTGAGAACAAGGCTGATGTCGATGACATTCATGAATATCTTCTGTTGAAAGG AGTGGAAGCAGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCTTTTAAGGCTGGAAAGA AAGATGTGTTGGTTGCAACCGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATCAACTATGACATG CCTGCTGAAATTGAAAATTATGTCCATAGGATTGGAAGGACTGGAAGATGTGGCAAAACTGGGATAGCAACAACATTCAT CAACAAGAATCAATCTCCCACAACATTACTTGATTTAAAGCACCTCTTGCAAGAAGCAAAGCAAAGGATTCCCCCAGTTT TGGCCGAGCTGAGTGATCCAATGGAAGACAATGAAGCAATCACAGACATAAGTGGGGTCAAGGGATGTGCATATTGTGGT GGGCTTGGTCATCGCATCCGTGATTGTCCCAAATTAGAACATCAGAAGAGCATGGCAATTGCAAACAATAGACATGATTA TTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA
Protein sequence (LotjaGi2g1v0398600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSEVAKMEEEEDDYEEYIPVAKRRLMEAQKILQRKGKASAVIDEELEKLRVAAEAKPSLLVKASQLKKDQPEISATEQI VQQEKEMIENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLHIRRMSKKECDLIRKQWHIIVDGGDIPPPIKNFKDMRFP EPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSREL ARQTFDVVEEFLIPMKEAGYPEIRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL VDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIMVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM PAEIENYVHRIGRTGRCGKTGIATTFINKNQSPTTLLDLKHLLQEAKQRIPPVLAELSDPMEDNEAITDISGVKGCAYCG GLGHRIRDCPKLEHQKSMAIANNRHDYFGSGGYRGEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 587 | 522 | 1.6E-222 | – | |
| PANTHER | 66 | 587 | 522 | 1.6E-222 | – | |
| Coils | 74 | 94 | 21 | - | – | |
| Gene3D | 120 | 371 | 252 | 7.1E-76 | – | |
| ProSiteProfiles | 152 | 180 | 29 | 10.153 | ||
| CDD | 163 | 368 | 206 | 4.54618E-135 | – | |
| SMART | 171 | 382 | 212 | 1.8E-56 | ||
| Pfam | 176 | 355 | 180 | 9.6E-47 | ||
| ProSiteProfiles | 183 | 367 | 185 | 29.283 | ||
| SUPERFAMILY | 228 | 511 | 284 | 4.6E-68 | ||
| Gene3D | 377 | 539 | 163 | 3.9E-56 | – | |
| ProSiteProfiles | 378 | 538 | 161 | 23.455 | ||
| CDD | 379 | 507 | 129 | 6.99798E-57 | – | |
| Pfam | 391 | 498 | 108 | 7.9E-31 | ||
| SMART | 417 | 498 | 82 | 8.6E-34 | ||
| SMART | 555 | 571 | 17 | 0.0053 | ||
| Pfam | 555 | 571 | 17 | 2.0E-4 | ||
| SUPERFAMILY | 555 | 576 | 22 | 2.09E-5 | ||
| ProSiteProfiles | 556 | 571 | 16 | 9.109 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0398600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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