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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0414700 |
| Transcript ID | LotjaGi2g1v0414700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT2G35270.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O82166|AHL21_ARATH AT-hook motif nuclear-localized protein 21; TrEMBL-Plants: tr|A0A1J7GT77|A0A1J7GT77_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91251623..91255318) extracted from Lotus japonicus Gifu genome v1.2.
TGTGTCTGGGGTCTTTAATTTGTCTCCTTCATCTCTCTCTTGCTTTGCTTCTTCTTCTTCTTCTCTTCAGCTCTCTTTCT ACTCCCTTTTCTTTATCTGCACTCTCCTTCTGTCTGTTTATCAATTCCTTTTCCATCAACACAACTTTTTTTTATATTCA CTCCACTCACCACTTCTCTTAAAATAAACCATAAACACAAAAGCAAGGGTTTTTTAAAACATAGTTTGCTCTACTATTTT TTACTAATATCAATATTTTTTTTCCTTTTTTTATGAATAAAAATTGTATATCTCTCTCTTCGTTTGATATGTCCATGGCT GGTTTGGATTTAGGCACACCATCATCATCACACTTCCTTCAAAACCTCCACAGAGAAGATCACTTCAACCTTCAGCAGCA GCAACAGCAACAACCACAGGAATCGGAGGAAGAACCCAACCACAACTCCGACCCGTTTTCAGCTGAAGATGGACCACGCT CCGGCGACTTGGTTGGCCGTCGACCACGCGGCCGGCCACCGGGGTCGAAGAACAAGCAGAAGCCGCCGGTTATCATAACT CGGGAGAGCGCCAACACGCTCCGGGCACACATCCTTGAAGTTGGGAACGGCTGCGACGTGTTTGACTGCGTCGCCACCTA CGCGCGGCGGCGCCAGCGCGGGATCTGTGTGCTCAGCGGCAGCGGCACCGTCACCAATGTCAGCCTGAGGCAGCCGGCGT CTGCGGGATCCGTTGTTTCCCTCCATGGAAGGTTTGAGATACTGTCACTCTCGGGATCTTTTCTGCCGCCGCCGGCTCCG CCGGGGGCAACCAGCTTGACGATTTACTTGGCCGGAGGGCAGGGGCAGGTAGTTGGTGGGAGTGTGGTGGGGGAGTTGAC CGCGGCGGGTCCCGTGATTGTGATCGCGGCCTCGTTCACCAACGTGGCTTATGAGCGGTTACCTTTGGATGAGGAAGAAG AACAACAGCTTCAGATGCAACAACCACCTACGCCTGGTGGTGGTGGCGGCGATGTGGTGACCACCAACGCGTTTCCAGAC CCGTCGTCGGGGCTTCCGTTTTTCAACTTGCCGCTGACGACGGCGATGCAGAGTAATGTTTCATTGCCAGCTGTGGATCA TGGTTGGGCGGGAAATTCGGCGGCGGCACGTTCTTCATTTTGAGGGTGTTTGTTTGTTTTGTTAATCTAATGTGGTTGAA TATTGATCCATCGCTAGTTGATGATCAAACTATGGTGAATTGAGGTCAGCAAATTCATGCACTTCATTTATATGATGATA TAATTTAGGTCATCTTCATCTTGTTTTCTTGTTTCTGTTGCTCATGGATTGTAAGATGTAGTAGTGAGTTTGAGTTGTAC TTGTTCGACTTAATTAATTGGTGTACTCTCATGGGTTTTGGTATATGAATATCGATCTTTGGGATTATTCCCTTGTGTCT ACTATGTATATGGTGAACTAGTTATACATCTTAGTCAGTTTCTTACTTTTTCTGCTTTAAATGTTAATTTGAGGGATTCA GACTTTAGACAAGCATTTACACAGGCCACATGGATGGCACACCTTGTTGTCGTTAAACATGAAGCAATATAGTAGCTCCC ATACCAACTAGCCATTATTTTTAGATTTTTCACCTTTCTACTTCACATCTCAACTTGCAGGTTGGTTTCTATTTTAAATA CCATCCAGCTAAAAACAACTTCCCTCCATGGTTTAATGTATCAATAATTAAATATCTCTCTATATATATAGATATATCTA TATTTTGTATGTATAGGTACTTAAGTTTTGGCATTGAATTTACTGTGATTAATTTATTCCTGGAAGAACTCATCAACAAT CGCACATATATAAGATCAGATTTAATTATATTTGCTTGATCAGACTGAACTATAAATCACACTCTTGGTTCTGCATTGCT TATAAAAAATAAAAAAACTCTTGGTTCTACATTTATCAGTCTTCACAAGTGTACTGGTATGGGCGTATCAGCTTTATGTA TTGGGCTTCCCATTATTGGTACAATTATTGGGCCAGGCGACCCATGATCCCTAGCGGGTCAAAACCAAGCTATAAAAGAC AGACACCACCCAAGCGGTGGGGGATCTAACATTTTCACGCATTTTTCATCTTGTTTGTTCCTTATCGCTCTCAATTGCTT AGCCCTTGCTTGATTTTTCATTGGTCTATTTTACATTCCTTTCGTTCTAAATCGATTAGCCCGAGAGGATAGTTCCATAC CGGAATATTGGCGCCCACCGTGGGGCCAGGTAAAACTTCCCCACTTCCACAAATTCATCCGTCACCGGATCATCATGACA AGCTTTTCTCCAACCACCGCTTTCATCCTTTTCCCTTGCCAATCCTCATCTGGAGTTCAAATATGTTATCTCGCATTTCA TCATTGGTCACAAGCAAGTAACTAAGTTTCATGGCAGCGTACAACCGATATCAATCCTCTTCTCTGAATTTACAATCGCT AAGCACCATTTTTCTCTTCATCATCCTCTGAGCCGTCATCATCGATCTGCCACCAAACTACCCATAATTCACAAAACCAG AAAACAAAATAGATCGAGGAAAAGGGAAGGGGACGAAGAGGAGAACAGAAATTCGCAGCGGCGCGGTCTCCAACGGCGGG GCGGAAGTTCAGGCGCGGGCGAAATTGATGCTTGACGACGGGATATACAATTTCAACCGCCAATTAGGAGTTGAAGCCAT CACTTTTGAGTTGAAACCGCCCACTCAATATCAACCGCCAACTCTAAATTTAATAGCCATTTTGTCTCAACTGCCACTTC GGAGTTGGAACCGCTCATTTTGTCTCAACCGCCATCTCTGAATCGAAATTGTTCATACTTGCATATGAGTTGCATCAAAC CAAATTGATTCAGGACCATTCCAATAGATCCTTGTTTCTTCAAATTTTTCTTCTACTTTTTGTTTCGGTTCTGTTTCCAT TAGATTTGTGCTTTGATTATCAATAGTTTAAAATTAATTTCATCATTCTCTTCTGTGCTTTTGATATGAGACAGAGAGGA GCATGGTAGATTAAGAAGAATAAGCCTATGAGTTGGAGCATGCCAACTGTTTGACGAAATGCTTCAGAAAAGCATTGTTT TTTTGCATGCCACAGTTTTAGAATCGGCACAAAGAGGATGACTTCTTTCCTGTTGCTGGTAGCGGTACATCCAGTGTCGG CATAGCGGAGAGTGATTGCAAACAAAATGGCAGATTATTGATTTTGGTTGAGCAAACTGAGGCGATGGTGACTAGGCGAA CTGATTGACATTAGTGTTCGAACAATGCCAAGAACTGGAGTCCAAATGACATGTTGGGTTTGCACATTCTAACTTATCTT TATCTGAATTTTTATGTGTTGGATGAAATGTTTATGTGCTTGTGTTAATCAGTAATTGAATATGAGTCTGAATGTATGTT GACATGTTTGAGTTCATTATGTGAAAATTATGGTGAAATTAATCTTATCTGTATTGTGAAGCTATTAAATAGAATGAGTG ATCATTTGATTTTGGTAATTGAAGCATGTTAACCTTCTTTCCTAAACAATGCATATTTCTTATGCTTTGTGCTTGCTGAA CAGTTTTTAAAAGTGTTTAAAGGGAAATATTCTTGAACCTGTTATTTTAAGCTCTACGTGCTATGCTACTTGTTTTGCTG TGATTTTGATTCTGAT
CDS sequence (LotjaGi2g1v0414700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAAAAATTGTATATCTCTCTCTTCGTTTGATATGTCCATGGCTGGTTTGGATTTAGGCACACCATCATCATCACA CTTCCTTCAAAACCTCCACAGAGAAGATCACTTCAACCTTCAGCAGCAGCAACAGCAACAACCACAGGAATCGGAGGAAG AACCCAACCACAACTCCGACCCGTTTTCAGCTGAAGATGGACCACGCTCCGGCGACTTGGTTGGCCGTCGACCACGCGGC CGGCCACCGGGGTCGAAGAACAAGCAGAAGCCGCCGGTTATCATAACTCGGGAGAGCGCCAACACGCTCCGGGCACACAT CCTTGAAGTTGGGAACGGCTGCGACGTGTTTGACTGCGTCGCCACCTACGCGCGGCGGCGCCAGCGCGGGATCTGTGTGC TCAGCGGCAGCGGCACCGTCACCAATGTCAGCCTGAGGCAGCCGGCGTCTGCGGGATCCGTTGTTTCCCTCCATGGAAGG TTTGAGATACTGTCACTCTCGGGATCTTTTCTGCCGCCGCCGGCTCCGCCGGGGGCAACCAGCTTGACGATTTACTTGGC CGGAGGGCAGGGGCAGGTAGTTGGTGGGAGTGTGGTGGGGGAGTTGACCGCGGCGGGTCCCGTGATTGTGATCGCGGCCT CGTTCACCAACGTGGCTTATGAGCGGTTACCTTTGGATGAGGAAGAAGAACAACAGCTTCAGATGCAACAACCACCTACG CCTGGTGGTGGTGGCGGCGATGTGGTGACCACCAACGCGTTTCCAGACCCGTCGTCGGGGCTTCCGTTTTTCAACTTGCC GCTGACGACGGCGATGCAGAGTAATGTTTCATTGCCAGCTGTGGATCATGGTTGGGCGGGAAATTCGGCGGCGGCACGTT CTTCATTTTGA
Protein sequence (LotjaGi2g1v0414700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKNCISLSSFDMSMAGLDLGTPSSSHFLQNLHREDHFNLQQQQQQQPQESEEEPNHNSDPFSAEDGPRSGDLVGRRPRG RPPGSKNKQKPPVIITRESANTLRAHILEVGNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSLRQPASAGSVVSLHGR FEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEEEQQLQMQQPPT PGGGGGDVVTTNAFPDPSSGLPFFNLPLTTAMQSNVSLPAVDHGWAGNSAAARSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 290 | 276 | 5.9E-132 | – | |
| PANTHER | 15 | 290 | 276 | 5.9E-132 | ||
| MobiDBLite | 24 | 52 | 29 | - | – | |
| MobiDBLite | 24 | 94 | 71 | - | – | |
| SUPERFAMILY | 100 | 235 | 136 | 5.49E-34 | – | |
| ProSiteProfiles | 100 | 239 | 140 | 39.214 | ||
| Gene3D | 103 | 238 | 136 | 3.4E-9 | – | |
| CDD | 104 | 187 | 84 | 2.75029E-20 | ||
| Pfam | 104 | 217 | 114 | 9.2E-29 | ||
| MobiDBLite | 227 | 248 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi2g1v0414700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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