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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014476
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We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.746s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0309609.1
n.a. AT-hook motif nuclear localized protein 20 [Theobroma cacao] gi|508714069|gb|EOY05966.1| chr0 161637754 161639413 +
2 domain predictions
1 GO term
Lj0g3v0341349.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508776764|gb|EOY24020.1| chr0 178839630 178842255 -
2 domain predictions
1 GO term
Lj1g3v1585840.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508723537|gb|EOY15434.1| chr1 19075974 19077424 -
2 domain predictions
1 GO term
Lj1g3v2896220.1
n.a. AT-hook DNA-binding protein [Medicago truncatula] gi|357507933|ref|XP_003624255.1| chr1 32667304 32669008 -
2 domain predictions
1 GO term
Lj2g3v2002760.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508777264|gb|EOY24520.1| chr2 30456480 30457857 +
2 domain predictions
1 GO term
Lj4g3v1288490.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508777264|gb|EOY24520.1| chr4 19062689 19063594 -
2 domain predictions
1 GO term
Lj5g3v1329810.1
n.a. DNA-binding protein [Medicago truncatula] gi|357441305|ref|XP_003590930.1| chr5 20516761 20518157 -
2 domain predictions
1 GO term
Lj6g3v1618390.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508723537|gb|EOY15434.1| chr6 18269014 18271368 -
2 domain predictions
1 GO term
LotjaGi1g1v0041800.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G42940.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9SJG4|AHL16_ARATH AT-hook motif nuclear-localized protein 16; TrEMBL-Plants: tr|A0A0B2PW89|A0A0B2PW89_GLYSO Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi1g1v0041800 LjG1.1_chr1 5711379 5712167 -
3 domain predictions
1 GO term
LotjaGi1g1v0041800.2
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G42940.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9SJG4|AHL16_ARATH AT-hook motif nuclear-localized protein 16; TrEMBL-Plants: tr|A0A0B2PW89|A0A0B2PW89_GLYSO Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi1g1v0041800 LjG1.1_chr1 5711379 5712319 -
3 domain predictions
1 GO term
LotjaGi1g1v0087700.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G14465.1 AT-hook motif nuclear-localized protein 20; Swiss-Prot: sp|Q8GWQ2|AHL20_ARATH AT-hook motif nuclear-localized protein 20; TrEMBL-Plants: tr|B9HMK7|B9HMK7_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0087700 LjG1.1_chr1 12717677 12721449 +
3 domain predictions
1 GO term
LotjaGi1g1v0138000.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|I1JGZ4|I1JGZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0138000 LjG1.1_chr1 22521365 22524027 +
3 domain predictions
1 GO term
LotjaGi1g1v0227900_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT1G76500.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9C9K7|AHL29_ARATH AT-hook motif nuclear-localized protein 29; TrEMBL-Plants: tr|A0A067LCE8|A0A067LCE8_JATCU Uncharacterized protein; Found in the gene: LotjaGi1g1v0227900_LC LjG1.1_chr1 52802532 52803959 +
2 domain predictions
1 GO term
LotjaGi1g1v0301100.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|A0A1J7HCL8|A0A1J7HCL8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0301100 LjG1.1_chr1 73448803 73452600 -
2 domain predictions
1 GO term
LotjaGi1g1v0491000.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G17800.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O23620|AHL23_ARATH AT-hook motif nuclear-localized protein 23; TrEMBL-Plants: tr|I1L656|I1L656_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0491000 LjG1.1_chr1 100452030 100459128 -
3 domain predictions
1 GO term
LotjaGi1g1v0491000.2
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G17800.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O23620|AHL23_ARATH AT-hook motif nuclear-localized protein 23; TrEMBL-Plants: tr|I1L656|I1L656_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0491000 LjG1.1_chr1 100457395 100458908 -
3 domain predictions
1 GO term
LotjaGi1g1v0491000.3
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G17800.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O23620|AHL23_ARATH AT-hook motif nuclear-localized protein 23; TrEMBL-Plants: tr|I1L656|I1L656_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0491000 LjG1.1_chr1 100457786 100458595 -
3 domain predictions
1 GO term
LotjaGi1g1v0519400_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|A0A1J7IG21|A0A1J7IG21_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0519400_LC LjG1.1_chr1 104292656 104294020 -
2 domain predictions
1 GO term
LotjaGi2g1v0020500_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|A0A1J7IR24|A0A1J7IR24_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0020500_LC LjG1.1_chr2 7499799 7500664 +
2 domain predictions
1 GO term
LotjaGi2g1v0305000_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|A0A1J7IR24|A0A1J7IR24_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0305000_LC LjG1.1_chr2 77837889 77838818 -
2 domain predictions
1 GO term
LotjaGi2g1v0414700.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G35270.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O82166|AHL21_ARATH AT-hook motif nuclear-localized protein 21; TrEMBL-Plants: tr|A0A1J7GT77|A0A1J7GT77_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414700 LjG1.1_chr2 91251295 91257716 +
2 domain predictions
1 GO term
LotjaGi2g1v0414700.2
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G35270.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O82166|AHL21_ARATH AT-hook motif nuclear-localized protein 21; TrEMBL-Plants: tr|A0A1J7GT77|A0A1J7GT77_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414700 LjG1.1_chr2 91251623 91255318 +
2 domain predictions
1 GO term
LotjaGi2g1v0428100.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G45430.1 AT-hook motif nuclear-localized protein 22; Swiss-Prot: sp|O22130|AHL22_ARATH AT-hook motif nuclear-localized protein 22; TrEMBL-Plants: tr|I1LGK4|I1LGK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0428100 LjG1.1_chr2 92539835 92542748 +
3 domain predictions
1 GO term
LotjaGi3g1v0432100.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G45430.1 AT-hook motif nuclear-localized protein 22; Swiss-Prot: sp|O22130|AHL22_ARATH AT-hook motif nuclear-localized protein 22; TrEMBL-Plants: tr|A0A072TPA5|A0A072TPA5_MEDTR AT hook motif DNA-binding family protein; Found in the gene: LotjaGi3g1v0432100 LjG1.1_chr3 84348433 84349356 -
3 domain predictions
1 GO term
LotjaGi4g1v0186400.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G17800.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O23620|AHL23_ARATH AT-hook motif nuclear-localized protein 23; TrEMBL-Plants: tr|A5C6L7|A5C6L7_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0186400 LjG1.1_chr4 41904592 41908463 -
3 domain predictions
1 GO term
LotjaGi5g1v0183100.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G14465.1 AT-hook motif nuclear-localized protein 20; Swiss-Prot: sp|Q8GWQ2|AHL20_ARATH AT-hook motif nuclear-localized protein 20; TrEMBL-Plants: tr|V7BE43|V7BE43_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0183100 LjG1.1_chr5 46628613 46648430 +
3 domain predictions
1 GO term
LotjaGi5g1v0206600.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT3G04570.1 AT-hook motif nuclear-localized protein 19; Swiss-Prot: sp|Q9SR17|AHL19_ARATH AT-hook motif nuclear-localized protein 19; TrEMBL-Plants: tr|I1LBS0|I1LBS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0206600 LjG1.1_chr5 50875470 50878667 -
2 domain predictions
1 GO term
LotjaGi6g1v0007100_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G14465.1 AT-hook motif nuclear-localized protein 20; Swiss-Prot: sp|Q8GWQ2|AHL20_ARATH AT-hook motif nuclear-localized protein 20; TrEMBL-Plants: tr|A0A151RXE6|A0A151RXE6_CAJCA Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi6g1v0007100_LC LjG1.1_chr6 1390718 1392915 +
3 domain predictions
1 GO term
LotjaGi6g1v0063700.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT3G55560.1 AT-hook protein of GA feedback 2; Swiss-Prot: sp|Q9M2S3|AHL15_ARATH AT-hook motif nuclear-localized protein 15; TrEMBL-Plants: tr|K7MPQ1|K7MPQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063700 LjG1.1_chr6 11786230 11789821 -
3 domain predictions
1 GO term
LotjaGi6g1v0180300_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|A0A1J7IR24|A0A1J7IR24_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0180300_LC LjG1.1_chr6 47191750 47193566 -
2 domain predictions
1 GO term