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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0416700 |
Transcript ID | LotjaGi2g1v0416700.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Haloacid dehalogenase-like hydrolase; TAIR: AT2G38740.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9ZVJ5|SGGP_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp; TrEMBL-Plants: tr|I1LGY1|I1LGY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91452632..91453699) extracted from Lotus japonicus Gifu genome v1.2.
ACTTATCAGTCACTTCCTTCGTGTTGTGGCTGCAGTAAGAATTTTCTCACCAAACTTGCTCCACTTGAAGCAGTTCTCTT TGATATAGATGGAACTCTTTGTGATTCCGATCCCCTCCACTACGATGCTTTACGTGAAATGCTCCAGGAGGTAATAGTGT TTCTTTTCTTTGAAAGAAAGATTTGTGGAAAAAATATTCAGAAAATAGATATTATAGTTTATTGCTATATTCCTTTTATT GTATTTATAAGTCATCATCACTAAGCACATGATCCATGACTATTAGAAAACTAACTTAAACTTTGGTGTTGGTGGTTTTC AGATTGGTTTTAATGGAGGTATTCCTATTACAGAGGAGTTTTTCATTAAGAACTTTGCTGGCAAGCACAGTAATGATACA GCCTTGTTTGTTTTTCCTGGTGATCTTGAACGAGGTTTAAAGTTTGTAGAAGAAAAGGAAGCCATGTTTCGGAGGTAACC CCTGCACCTTTTCAATTATAGTTCATTCGAAGCTTAAGAAGATAATTCCATGATGGACTATCCAGATTGGCGGCTGAGCA ACTGAAGCCTTTAAGTGGTCTTGATAAAGTGATGAAATGGATTGAAAATCATGGATTGAAACGAGCTGCCGTTACCAATG CTCCAAGAGAAAACGCAGAACTCATTATCTCAAAACTTGGTCTCTCATATTTCTTTGATGCTGTTATTCTTGGTGATGAA TGTGAACATGCCAAGCCTCATCCAGAACCCTATTTGAAAGGTCTTGAAGCTCTGAAGGCATCAAAGAATCACACATTTGT ATTTGAGGTCTGGGTTTTTCATGCATTCTTATAGAATAATTTGTTCTAGTTCAGCTTTTAACACACATGTTCTGTTGTCA TAGGATTCTGTGTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCTGTTATAGGTTTAGCTACCCGAAACCCCGAGGA TTTACTCATGGAAGCAAAGCCTGCTTTTCTGATTAAGGATTATGACGATCCAAAATTGTGGGCAGCTCTGGAAGAACTTG ACAATGCTGGTACTAGTTAAAATTTTGA
CDS sequence (LotjaGi2g1v0416700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCAGGAGATTGGTTTTAATGGAGGTATTCCTATTACAGAGGAGTTTTTCATTAAGAACTTTGCTGGCAAGCACAG TAATGATACAGCCTTGTTTGTTTTTCCTGGTGATCTTGAACGAGGTTTAAAGTTTGTAGAAGAAAAGGAAGCCATGTTTC GGAGATTGGCGGCTGAGCAACTGAAGCCTTTAAGTGGTCTTGATAAAGTGATGAAATGGATTGAAAATCATGGATTGAAA CGAGCTGCCGTTACCAATGCTCCAAGAGAAAACGCAGAACTCATTATCTCAAAACTTGGTCTCTCATATTTCTTTGATGC TGTTATTCTTGGTGATGAATGTGAACATGCCAAGCCTCATCCAGAACCCTATTTGAAAGGTCTTGAAGCTCTGAAGGCAT CAAAGAATCACACATTTGTATTTGAGGATTCTGTGTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCTGTTATAGGT TTAGCTACCCGAAACCCCGAGGATTTACTCATGGAAGCAAAGCCTGCTTTTCTGATTAAGGATTATGACGATCCAAAATT GTGGGCAGCTCTGGAAGAACTTGACAATGCTGGTACTAGTTAA
Protein sequence (LotjaGi2g1v0416700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQEIGFNGGIPITEEFFIKNFAGKHSNDTALFVFPGDLERGLKFVEEKEAMFRRLAAEQLKPLSGLDKVMKWIENHGLK RAAVTNAPRENAELIISKLGLSYFFDAVILGDECEHAKPHPEPYLKGLEALKASKNHTFVFEDSVSGIKAGVAAGMPVIG LATRNPEDLLMEAKPAFLIKDYDDPKLWAALEELDNAGTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 197 | 197 | 3.1E-107 | – | |
PANTHER | 1 | 197 | 197 | 3.1E-107 | – | |
SUPERFAMILY | 10 | 193 | 184 | 1.02E-36 | ||
Gene3D | 13 | 59 | 47 | 3.1E-44 | ||
CDD | 44 | 163 | 120 | 2.93393E-36 | – | |
TIGRFAM | 48 | 160 | 113 | 6.2E-13 | ||
Pfam | 54 | 160 | 107 | 3.8E-23 | ||
Gene3D | 60 | 185 | 126 | 3.1E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0416700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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