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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0416700 |
| Transcript ID | LotjaGi2g1v0416700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Haloacid dehalogenase-like hydrolase; TAIR: AT2G38740.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9ZVJ5|SGGP_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp; TrEMBL-Plants: tr|I1LGY1|I1LGY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91452318..91455316) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATCATTTACCGATATTAATCCTGAGGGTTTCCGGTAATTTCCCCACTTTAAGTGGGGCGAGAAGCCTAAGGGCTG GGGTGTTAAACCCAATTCCCCTGATACAGTGATACCCTGCGTTTTTATTCTTTGGTGAATTCCATTAGCATTGTTCTTGC TGCGAAGTAACTACCCCCTCTCTCTCTCTCACTGGTTAACCATGAGAGCTTCTTCTGAGAATTGCGTTGAAAGGTAAAGT TCTTGCTGCCAATACTAGCACTTATCATTCAGAAATCAGAAACCTCTTTGATTGTTTTATCATTATGTTCAGTTCCATTT CCATTTTTCTTCAGTTCTGTTCTGTTGTAATAACAGTGCCCATCGATGTAATAAAAAAAACATGTATGTTGGATTTATCA TATATGTGTAGAGTGCCAAGCCAACTACTATTAGCTAAGGTGATTGATTGTGATTGGATCAATATATATATTTATAAAAA TCCAATTTGATGAATCTCTATATATATTGTTGAAGATGAGGCAAATTTAGGGTTCTGCAATGAACCGGCAATCTGTGCTA TTTATGATATATAGTATTAAGAAGACTTCTGGTTTCTGCATACTCCTGCTGCTAACTAGCTAAAAGTGTATGTAATAGCA GGGTTTTAAATTGAGGTTGCGGTCGTGGTTGTAGTTATGTTGCGGAATTGCGGACAAATGCGGCTTGATGTGGCCGCAAT TGGTGTCGTGATGCCGTTTTGGGGAATCAAAAACCATTTACGTTGTGGCCGCAATTGTGGACCACAATTTAAAACCCTGT GTTATAGTGCCAGCCATTGTCTAAGGTGATTGGATTTATATACATTTATGAAAACCCAAGTCAATGATTCTTAGTATATG CTATCAAAGAGGTAAAAATTTAGGGATCATCAGTTAATTAACAACCTGTGCTATTTATGATAAAATATGTACTGCTTTCT GCTGTGGTTAGTATTTACTTAGTAGTAGTGCTACTTTTGGATTTGGTATAAATTCTGCTAACTTACTCAAAACGTGTGTG GTGTGTTGCTAAGTGGCGTCAATGTTTTCTGCAAGATCAGTTAAGTTGCTAATGTTTGAATGAGAGTAGCAAACCCCCAC GTAATGTAGTCATGTTCTGTATAGCTTGTAAAATTCACTATCTTGCAATCTATCTATCTATTATGGTCTAATAAAACTGA ATCTTGTGATCAATTATTGTCAAATCATCACCATTTTTGTCAAATCATCAAATATAATTTGTATTTTCATACATGTCCTA CTTTTCTTAAATATTTTGTAAATATCCAATCAATCACCAGTTATTTCATTGGTTTACATGCCTTTGCTGTTATACCTATG TACATTAATACTCAATGCACAAAATATGGCTTCATCTGTTTGACATGTCAAACTCATTGTCATAATTTTCAATTTGCAAT GTTCTTGTTTGACTGATCAGCTTGTGTGGGGCTGGCACCCTTGTTGTTGAGATATGCTTTGTATTGTGTAAAAAATAAAA ACTATTCATGTGCCTTCAGTCCTTCACTAATTGGTTCATGATATGTTTTGTATAGAAACTTCATTATACAGCCATTTCCT GTTTTATCAGTTGCTGCACTTATCAGTCACTTCCTTCGTGTTGTGGCTGCAGTAAGAATTTTCTCACCAAACTTGCTCCA CTTGAAGCAGTTCTCTTTGATATAGATGGAACTCTTTGTGATTCCGATCCCCTCCACTACGATGCTTTACGTGAAATGCT CCAGGAGGTAATAGTGTTTCTTTTCTTTGAAAGAAAGATTTGTGGAAAAAATATTCAGAAAATAGATATTATAGTTTATT GCTATATTCCTTTTATTGTATTTATAAGTCATCATCACTAAGCACATGATCCATGACTATTAGAAAACTAACTTAAACTT TGGTGTTGGTGGTTTTCAGATTGGTTTTAATGGAGGTATTCCTATTACAGAGGAGTTTTTCATTAAGAACTTTGCTGGCA AGCACAGTAATGATACAGCCTTGTTTGTTTTTCCTGGTGATCTTGAACGAGGTTTAAAGTTTGTAGAAGAAAAGGAAGCC ATGTTTCGGAGGTAACCCCTGCACCTTTTCAATTATAGTTCATTCGAAGCTTAAGAAGATAATTCCATGATGGACTATCC AGATTGGCGGCTGAGCAACTGAAGCCTTTAAGTGGTCTTGATAAAGTGATGAAATGGATTGAAAATCATGGATTGAAACG AGCTGCCGTTACCAATGCTCCAAGAGAAAACGCAGAACTCATTATCTCAAAACTTGGTCTCTCATATTTCTTTGATGCTG TTATTCTTGGTGATGAATGTGAACATGCCAAGCCTCATCCAGAACCCTATTTGAAAGGTCTTGAAGCTCTGAAGGCATCA AAGAATCACACATTTGTATTTGAGGTCTGGGTTTTTCATGCATTCTTATAGAATAATTTGTTCTAGTTCAGCTTTTAACA CACATGTTCTGTTGTCATAGGATTCTGTGTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCTGTTATAGGTTTAGCT ACCCGAAACCCCGAGGATTTACTCATGGAAGCAAAGCCTGCTTTTCTGATTAAGGATTATGACGATCCAAAATTGTGGGC AGCTCTGGAAGAACTTGACAATGCTGGTACTAGTTAAAATTTTGAATTACTAGTGCACAAAATGTATTCAAGTAGCGTGT TCATCGTAAAGTTAAAGGATCATGAGAATAATGTTTATAAGGGTTGGCATTATAATACTAGTCCTTAATCAATGTTGCTT TTGAAAGAGAGAGCAAACAGTCGTATACTTATATTCTGTTTGTGTTTTGTAATAATATCATTTTTTGCTATGAAAATGCC GGTCAAGAGAGACCAAGGAGTGTTCACAATACATAACATGAAGCATAACATGATCGTGGCATAAGGATTAAGCTATTGTA AGATAAAAGGTTATTTTAAAGAAAGAATATTTATAATCA
CDS sequence (LotjaGi2g1v0416700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCGGAATTGCGGACAAATGCGGCTTGATGTGGCCGCAATTGGTGTCGTGATGCCGTTTTGGGGAATCAAAAACCA TTTACGTTGTGGCCGCAATTGTGGACCACAATTTAAAACCCTGTGTTATAGTGCCAGCCATTGTCTAAGTAAGAATTTTC TCACCAAACTTGCTCCACTTGAAGCAGTTCTCTTTGATATAGATGGAACTCTTTGTGATTCCGATCCCCTCCACTACGAT GCTTTACGTGAAATGCTCCAGGAGATTGGTTTTAATGGAGGTATTCCTATTACAGAGGAGTTTTTCATTAAGAACTTTGC TGGCAAGCACAGTAATGATACAGCCTTGTTTGTTTTTCCTGGTGATCTTGAACGAGGTTTAAAGTTTGTAGAAGAAAAGG AAGCCATGTTTCGGAGATTGGCGGCTGAGCAACTGAAGCCTTTAAGTGGTCTTGATAAAGTGATGAAATGGATTGAAAAT CATGGATTGAAACGAGCTGCCGTTACCAATGCTCCAAGAGAAAACGCAGAACTCATTATCTCAAAACTTGGTCTCTCATA TTTCTTTGATGCTGTTATTCTTGGTGATGAATGTGAACATGCCAAGCCTCATCCAGAACCCTATTTGAAAGGTCTTGAAG CTCTGAAGGCATCAAAGAATCACACATTTGTATTTGAGGATTCTGTGTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATG CCTGTTATAGGTTTAGCTACCCGAAACCCCGAGGATTTACTCATGGAAGCAAAGCCTGCTTTTCTGATTAAGGATTATGA CGATCCAAAATTGTGGGCAGCTCTGGAAGAACTTGACAATGCTGGTACTAGTTAA
Protein sequence (LotjaGi2g1v0416700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRNCGQMRLDVAAIGVVMPFWGIKNHLRCGRNCGPQFKTLCYSASHCLSKNFLTKLAPLEAVLFDIDGTLCDSDPLHYD ALREMLQEIGFNGGIPITEEFFIKNFAGKHSNDTALFVFPGDLERGLKFVEEKEAMFRRLAAEQLKPLSGLDKVMKWIEN HGLKRAAVTNAPRENAELIISKLGLSYFFDAVILGDECEHAKPHPEPYLKGLEALKASKNHTFVFEDSVSGIKAGVAAGM PVIGLATRNPEDLLMEAKPAFLIKDYDDPKLWAALEELDNAGTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 46 | 277 | 232 | 1.01E-49 | ||
| PANTHER | 50 | 281 | 232 | 3.2E-127 | – | |
| PANTHER | 50 | 281 | 232 | 3.2E-127 | – | |
| SFLD | 60 | 268 | 209 | 6.026E-44 | – | |
| SFLD | 60 | 268 | 209 | 6.026E-44 | – | |
| PRINTS | 60 | 71 | 12 | 9.6E-7 | ||
| Gene3D | 61 | 269 | 209 | 1.0E-55 | ||
| CDD | 62 | 247 | 186 | 5.33375E-42 | – | |
| Pfam | 63 | 244 | 182 | 4.7E-31 | ||
| Gene3D | 75 | 143 | 69 | 1.0E-55 | ||
| TIGRFAM | 132 | 244 | 113 | 1.5E-12 | ||
| PRINTS | 158 | 171 | 14 | 9.6E-7 | ||
| PRINTS | 189 | 205 | 17 | 9.6E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0416700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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