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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0441300 |
Transcript ID | LotjaGi2g1v0441300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pleckstrin-like (PH) domain protein; TAIR: AT4G23895.1 Pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp|P71404|CLPB_HELPY Chaperone protein ClpB; TrEMBL-Plants: tr|I3SRK6|I3SRK6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0441300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93762946..93766578) extracted from Lotus japonicus Gifu genome v1.2.
GTACATATAACCAACCAGCATAAGCAAAGCAAAGCAACTACTACTCCTTGTTATACCGAACAGCCGGTGTCGTACGTATG ATATCATCCGCTTGCGTAAACAGCAGCAGCAACTACCTTGGTTTGGTTCTCTCTTCCTCCTTGTCCTACCGCAGCAGGTA CAGCATCCTCTCTTTGCAAATTACCATAAAAAGCTCAATTCATTGATTTTATTCCGTGTTGTGTTATCTTCGAGTGAGGG ATTATTTGTTGCTGATTGTAATTTGCAAGCACCTGTTTACTTTATTGAAGAATTAAGTTTTTCATTCTTTTCCTAAACCT AAATGATTCATACGAATGAGTTTACCTGCGATCCTTGCTGTTCGAGAATTTGGGATAAATCAGCAAACATGAATTAATCC AGTTTCACCTACTCATTGCCTTGTTTATTTCCTATATTTTTCAGGCTTTCTATTTTTATTTATTTATTTTTTGTGTTCCG TGTTTTCAATTTTGACTTCAATTCTGTAAGCTGATGAAATTGGGGGTTAATGACTTTGACTGATCATGTATTATAGGAGA TAGATGTTGTTATAGTCTTTACTTTTAACCTATTTTAGTTGAGTATCACAGCTCTTAGGTTTTGAAACTCGGTCTATTGC TTCTAAGAGAGAGAATATTGAATGCATTTGTCATGTGTTATTTCTCTGGAGTTTTATCTAACCAATTAAGAATTTACTAA TCTTGCTTAGCAAGATGATAATCTGAGGATATTATGTCCCGGATTCAGTTTATATGATTTATTCGAACTTCGTGGAAGAG TTACTTCTTTTACGTAAGGGGGAAAACAACAAAACAAAAAGGGAAATGTAGATTGTTTATATGATGTGCTTTTTTTATAT GTTGGTGAACCATACTTCTTCTATATTTCAAATTCTGGCAGGCATGTCATATATGGATTACTAAGATAGTAAGATCAATC TGAGAATTCAAATTCAGGAAATGTATAGCTTAGTTAAGGGCGTGATGCCCTTCCTAGCATTGTTGATGTTTCGGGGTAAT TCTCATTACTATCTTCCTCTGATATAGGTTTGCCCTTCCTTCTTAAAGAATCTCTTAGAACAGAACACCTATTACACAAC CTAGAACTGTTAAAGCTTTGAGGTGTTTTCTCCTTGTGGAAAAGGGAAAAGAAATCATTAATTGGAATGTCAATAAGAGA GTTTGAGTCAACGTAATATCAATCACTCAGTCTAGCATAACTAAGCTCTCAGTACCACCGGTGGACTCGAACAACGGCTT CTTTCATGTTGAAATTGTTTTCTTTTCGGGGGCTGCCCTGGAGCCTCAGTAATGGTGGTCAGGAAAAGGTTTGCTTTGAA CAGATTTTACACTCTAAGTCCTATGTCATTGATGAAGTTCCTATGTATCTTACCATGGCAAATTATTTTTTGTAGGTTCA GCTGACAGCTGTTGAAGTAGAGTCACTTCGATCAGAACTAGCTGATTTAGAAGAGAGGGAAGCTCAATTAAAAGCTCAGT GAGTGATCTGTAACTTTGGACTATTCTAACATCTTGTCTTATAATGTTCTATAAGTTCTTATCCAAAAGTAGTTAGCTTT TAGTTACCTTTCTTCCTGGGTTTGGGTATTTCTCTTTTTATCAGATTACCAAAGATCAGATGCTAGCAATAGTTTTGGCG TCTATGAATGTGTGGTTGTTTGAGTAGTTGGGACTAGTGAAGTTTAATTTCCGTTTTTCTTTCATAGTTCTCCATGTGTC TCCTTAATAGTGAATAGTGATTTTCTTCCTTCTGTAATAGAACCAGCTACTCAATATTAGAGTTGAAATTCAGGGTTTAA TCTTTACCTTACCCTTCCTTATTTGTGGGTAATTCTTACATCTCTTAATAGAAGTCGGCGTTTTCTAAAAATAATTCTGG TGTTTTTATTGAATACAGGTTGGAAAATATTGATGAAATATTGCGGTCATCTCGTCTATCTGGCTATTTGTACATTCGAA CTGTACTTACCGTCTAAATCTCCATTATTTTGCTCTGCATCAATTTGTGGGTCACTATAATGTTTCCCTGACAGGCTTTG TACTAATTTGTGATATGCTTGTGATTCTTGTCCATAGAGATGGGCGGCACTTCCGGGAGAATCTCCACCTATAGATGATA CTGAAGTAGATGATTGGGTTCCTCGCTTTGTTGTTCTTCAGGGTGCATGTCTATTCTTATATTTGGTTTGTACAGGTAAG GTAGTTATTTGTTCTTTAGATGATACTGAAAGTTTTTTTCCATCTTGATAGATTTCTAGAGAAAGCTCTCATGCCATGTG ATGAACCAATGCTTTCATAGTTCTTGCCATTAGAAGGCTCGTGTTTGGGATTTACCGATAGTTCAATACCTTTAACAAAA ATAAATATGCATGCGCTGTTGGCTCTATCAAGTATATTGATTCTTAAGCTTCGAGATGATTGGTTTTTCATTTACAATTG CTGATGAAGGTGGAAAATTGCAGATCTAAGTCCTCAGGACTCAACGCTTCTATCTGACATTATTGAAGTAGATCAGTTAC CGAGTTTCAAGCGTGAAGATGATGAGATGCGATATGCCTTTTATATTTTAACTCGTCATGGATTACGATATGAATGCTCA AGTAGTTCTAAGATACAGGTATCTCTAAGTTAACCTAGTTTGTTCATTGGTTGTTTTTAGGCTTAATTGTATTTTTTATC CTTAATAGTTTTACAATTGCTCCAATTTACTCCCCTGCTTTTAAAATTAAGAAAACATGGTCATGACATTAACTTATCAT CCAATAACTAAACGGAAGACACTGACATAGATTAGAACTTTTGACCTGACAAGTGACAGAATGGTCTTAATTTGCCATTC ACATAAACCTTTGTGATCCAATTCCATCGAATGGTAGGTTAAAGTCAAGACCATATTTGTCCAATTTTTAAAGTAAATTG AACTAGATTGAAGCAATTGAAAGTTGAAATTATGAAGTCCATACAGTCTGAGCTAAATTATTTACATCCTTATTTTATTT ACAGTCAACATCTAATTAGTAATTACAGGCTACACATATTTTGATCATATTAACCTATGTAGTTCCCTCCCTTATTATTC ATCTTTCAGGTGGACTCATGGTTATCAGCTTTAAAATCTGACTGCAAATTGGAATCTGATACAGCAACTCCCAATGGTTC AATTGATATGTAGTATATTTGACACCTTATCTTGTAAGATGGCTTGAAAGATGAGCTACTTATGTAAATATGACCCTTGT ACATACTAGATAAAATAGTAATTTGAATTGAATAGAGACTGAAGATTATTTCATCACTTCCAGCTCTCCTGGACTTAATC GACCCATAACCATAAGGGATCTAAAATTGATTTTCTTATGCCTGAACAATTAGTGATCTTGGTTGGTGCTGATGATGAAT CATACAAGCATGGGGAAAGAACTTGTGTTACACTAGTGATTGTTGAGGGGTATATGCTCATTAATCTCGTGTGTTAAATG TCAACCGTGTGAACAACGCAACATTTTTTATGATAGGTTCCCCAAGAAGAACCTCCTTTATTTTCTTCCCTGTCAGTAAC GATGGCAATGGGTCTCGGACCCATAGGGTACCC
CDS sequence (LotjaGi2g1v0441300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAATTGTTTTCTTTTCGGGGGCTGCCCTGGAGCCTCAGTAATGGTGGTCAGGAAAAGGTTCAGCTGACAGCTGT TGAAGTAGAGTCACTTCGATCAGAACTAGCTGATTTAGAAGAGAGGGAAGCTCAATTAAAAGCTCAGTTGGAAAATATTG ATGAAATATTGCGGTCATCTCGTCTATCTGGCTATTTGTACATTCGAACTAGATGGGCGGCACTTCCGGGAGAATCTCCA CCTATAGATGATACTGAAGTAGATGATTGGGTTCCTCGCTTTGTTGTTCTTCAGGGTGCATGTCTATTCTTATATTTGGT TTGTACAGATCTAAGTCCTCAGGACTCAACGCTTCTATCTGACATTATTGAAGTAGATCAGTTACCGAGTTTCAAGCGTG AAGATGATGAGATGCGATATGCCTTTTATATTTTAACTCGTCATGGATTACGATATGAATGCTCAAGTAGTTCTAAGATA CAGGTGGACTCATGGTTATCAGCTTTAAAATCTGACTGCAAATTGGAATCTGATACAGCAACTCCCAATGGTTCAATTGA TATGTAG
Protein sequence (LotjaGi2g1v0441300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKLFSFRGLPWSLSNGGQEKVQLTAVEVESLRSELADLEEREAQLKAQLENIDEILRSSRLSGYLYIRTRWAALPGESP PIDDTEVDDWVPRFVVLQGACLFLYLVCTDLSPQDSTLLSDIIEVDQLPSFKREDDEMRYAFYILTRHGLRYECSSSSKI QVDSWLSALKSDCKLESDTATPNGSIDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 181 | 181 | 2.0E-104 | – | |
PANTHER | 1 | 181 | 181 | 2.0E-104 | – | |
Coils | 22 | 59 | 38 | - | – | |
Gene3D | 44 | 173 | 130 | 2.4E-9 | ||
SUPERFAMILY | 53 | 171 | 119 | 2.91E-12 | – | |
ProSiteProfiles | 59 | 174 | 116 | 8.535 | ||
SMART | 60 | 176 | 117 | 0.0076 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0441300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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