Transcript — View — Lotus Base

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LotjaGi2g1v0441300.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0441300
Transcript ID	LotjaGi2g1v0441300.1
Related isoforms 1	LotjaGi2g1v0441300.2
Lotus japonicus genome version	Gifu v1.2
Description	Pleckstrin-like (PH) domain protein; TAIR: AT4G23895.1 Pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp\|P71404\|CLPB_HELPY Chaperone protein ClpB; TrEMBL-Plants: tr\|I3SRK6\|I3SRK6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0441300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:93762946..93766578) extracted from Lotus japonicus Gifu genome v1.2.

GTACATATAACCAACCAGCATAAGCAAAGCAAAGCAACTACTACTCCTTGTTATACCGAACAGCCGGTGTCGTACGTATG ATATCATCCGCTTGCGTAAACAGCAGCAGCAACTACCTTGGTTTGGTTCTCTCTTCCTCCTTGTCCTACCGCAGCAGGTA CAGCATCCTCTCTTTGCAAATTACCATAAAAAGCTCAATTCATTGATTTTATTCCGTGTTGTGTTATCTTCGAGTGAGGG ATTATTTGTTGCTGATTGTAATTTGCAAGCACCTGTTTACTTTATTGAAGAATTAAGTTTTTCATTCTTTTCCTAAACCT AAATGATTCATACGAATGAGTTTACCTGCGATCCTTGCTGTTCGAGAATTTGGGATAAATCAGCAAACATGAATTAATCC AGTTTCACCTACTCATTGCCTTGTTTATTTCCTATATTTTTCAGGCTTTCTATTTTTATTTATTTATTTTTTGTGTTCCG TGTTTTCAATTTTGACTTCAATTCTGTAAGCTGATGAAATTGGGGGTTAATGACTTTGACTGATCATGTATTATAGGAGA TAGATGTTGTTATAGTCTTTACTTTTAACCTATTTTAGTTGAGTATCACAGCTCTTAGGTTTTGAAACTCGGTCTATTGC TTCTAAGAGAGAGAATATTGAATGCATTTGTCATGTGTTATTTCTCTGGAGTTTTATCTAACCAATTAAGAATTTACTAA TCTTGCTTAGCAAGATGATAATCTGAGGATATTATGTCCCGGATTCAGTTTATATGATTTATTCGAACTTCGTGGAAGAG TTACTTCTTTTACGTAAGGGGGAAAACAACAAAACAAAAAGGGAAATGTAGATTGTTTATATGATGTGCTTTTTTTATAT GTTGGTGAACCATACTTCTTCTATATTTCAAATTCTGGCAGGCATGTCATATATGGATTACTAAGATAGTAAGATCAATC TGAGAATTCAAATTCAGGAAATGTATAGCTTAGTTAAGGGCGTGATGCCCTTCCTAGCATTGTTGATGTTTCGGGGTAAT TCTCATTACTATCTTCCTCTGATATAGGTTTGCCCTTCCTTCTTAAAGAATCTCTTAGAACAGAACACCTATTACACAAC CTAGAACTGTTAAAGCTTTGAGGTGTTTTCTCCTTGTGGAAAAGGGAAAAGAAATCATTAATTGGAATGTCAATAAGAGA GTTTGAGTCAACGTAATATCAATCACTCAGTCTAGCATAACTAAGCTCTCAGTACCACCGGTGGACTCGAACAACGGCTT CTTTCATGTTGAAATTGTTTTCTTTTCGGGGGCTGCCCTGGAGCCTCAGTAATGGTGGTCAGGAAAAGGTTTGCTTTGAA CAGATTTTACACTCTAAGTCCTATGTCATTGATGAAGTTCCTATGTATCTTACCATGGCAAATTATTTTTTGTAGGTTCA GCTGACAGCTGTTGAAGTAGAGTCACTTCGATCAGAACTAGCTGATTTAGAAGAGAGGGAAGCTCAATTAAAAGCTCAGT GAGTGATCTGTAACTTTGGACTATTCTAACATCTTGTCTTATAATGTTCTATAAGTTCTTATCCAAAAGTAGTTAGCTTT TAGTTACCTTTCTTCCTGGGTTTGGGTATTTCTCTTTTTATCAGATTACCAAAGATCAGATGCTAGCAATAGTTTTGGCG TCTATGAATGTGTGGTTGTTTGAGTAGTTGGGACTAGTGAAGTTTAATTTCCGTTTTTCTTTCATAGTTCTCCATGTGTC TCCTTAATAGTGAATAGTGATTTTCTTCCTTCTGTAATAGAACCAGCTACTCAATATTAGAGTTGAAATTCAGGGTTTAA TCTTTACCTTACCCTTCCTTATTTGTGGGTAATTCTTACATCTCTTAATAGAAGTCGGCGTTTTCTAAAAATAATTCTGG TGTTTTTATTGAATACAGGTTGGAAAATATTGATGAAATATTGCGGTCATCTCGTCTATCTGGCTATTTGTACATTCGAA CTGTACTTACCGTCTAAATCTCCATTATTTTGCTCTGCATCAATTTGTGGGTCACTATAATGTTTCCCTGACAGGCTTTG TACTAATTTGTGATATGCTTGTGATTCTTGTCCATAGAGATGGGCGGCACTTCCGGGAGAATCTCCACCTATAGATGATA CTGAAGTAGATGATTGGGTTCCTCGCTTTGTTGTTCTTCAGGGTGCATGTCTATTCTTATATTTGGTTTGTACAGGTAAG GTAGTTATTTGTTCTTTAGATGATACTGAAAGTTTTTTTCCATCTTGATAGATTTCTAGAGAAAGCTCTCATGCCATGTG ATGAACCAATGCTTTCATAGTTCTTGCCATTAGAAGGCTCGTGTTTGGGATTTACCGATAGTTCAATACCTTTAACAAAA ATAAATATGCATGCGCTGTTGGCTCTATCAAGTATATTGATTCTTAAGCTTCGAGATGATTGGTTTTTCATTTACAATTG CTGATGAAGGTGGAAAATTGCAGATCTAAGTCCTCAGGACTCAACGCTTCTATCTGACATTATTGAAGTAGATCAGTTAC CGAGTTTCAAGCGTGAAGATGATGAGATGCGATATGCCTTTTATATTTTAACTCGTCATGGATTACGATATGAATGCTCA AGTAGTTCTAAGATACAGGTATCTCTAAGTTAACCTAGTTTGTTCATTGGTTGTTTTTAGGCTTAATTGTATTTTTTATC CTTAATAGTTTTACAATTGCTCCAATTTACTCCCCTGCTTTTAAAATTAAGAAAACATGGTCATGACATTAACTTATCAT CCAATAACTAAACGGAAGACACTGACATAGATTAGAACTTTTGACCTGACAAGTGACAGAATGGTCTTAATTTGCCATTC ACATAAACCTTTGTGATCCAATTCCATCGAATGGTAGGTTAAAGTCAAGACCATATTTGTCCAATTTTTAAAGTAAATTG AACTAGATTGAAGCAATTGAAAGTTGAAATTATGAAGTCCATACAGTCTGAGCTAAATTATTTACATCCTTATTTTATTT ACAGTCAACATCTAATTAGTAATTACAGGCTACACATATTTTGATCATATTAACCTATGTAGTTCCCTCCCTTATTATTC ATCTTTCAGGTGGACTCATGGTTATCAGCTTTAAAATCTGACTGCAAATTGGAATCTGATACAGCAACTCCCAATGGTTC AATTGATATGTAGTATATTTGACACCTTATCTTGTAAGATGGCTTGAAAGATGAGCTACTTATGTAAATATGACCCTTGT ACATACTAGATAAAATAGTAATTTGAATTGAATAGAGACTGAAGATTATTTCATCACTTCCAGCTCTCCTGGACTTAATC GACCCATAACCATAAGGGATCTAAAATTGATTTTCTTATGCCTGAACAATTAGTGATCTTGGTTGGTGCTGATGATGAAT CATACAAGCATGGGGAAAGAACTTGTGTTACACTAGTGATTGTTGAGGGGTATATGCTCATTAATCTCGTGTGTTAAATG TCAACCGTGTGAACAACGCAACATTTTTTATGATAGGTTCCCCAAGAAGAACCTCCTTTATTTTCTTCCCTGTCAGTAAC GATGGCAATGGGTCTCGGACCCATAGGGTACCC

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0441300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGAAATTGTTTTCTTTTCGGGGGCTGCCCTGGAGCCTCAGTAATGGTGGTCAGGAAAAGGTTCAGCTGACAGCTGT TGAAGTAGAGTCACTTCGATCAGAACTAGCTGATTTAGAAGAGAGGGAAGCTCAATTAAAAGCTCAGTTGGAAAATATTG ATGAAATATTGCGGTCATCTCGTCTATCTGGCTATTTGTACATTCGAACTAGATGGGCGGCACTTCCGGGAGAATCTCCA CCTATAGATGATACTGAAGTAGATGATTGGGTTCCTCGCTTTGTTGTTCTTCAGGGTGCATGTCTATTCTTATATTTGGT TTGTACAGATCTAAGTCCTCAGGACTCAACGCTTCTATCTGACATTATTGAAGTAGATCAGTTACCGAGTTTCAAGCGTG AAGATGATGAGATGCGATATGCCTTTTATATTTTAACTCGTCATGGATTACGATATGAATGCTCAAGTAGTTCTAAGATA CAGGTGGACTCATGGTTATCAGCTTTAAAATCTGACTGCAAATTGGAATCTGATACAGCAACTCCCAATGGTTCAATTGA TATGTAG

Download CDS Sequence

Protein sequence (LotjaGi2g1v0441300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLKLFSFRGLPWSLSNGGQEKVQLTAVEVESLRSELADLEEREAQLKAQLENIDEILRSSRLSGYLYIRTRWAALPGESP PIDDTEVDDWVPRFVVLQGACLFLYLVCTDLSPQDSTLLSDIIEVDQLPSFKREDDEMRYAFYILTRHGLRYECSSSSKI QVDSWLSALKSDCKLESDTATPNGSIDM

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34837 View details on PTHR34837 Search for proteins/transripts with this domain View external data on PTHR34837	1	181	181	2.0E-104	–
PANTHER	PTHR34837:SF2 View details on PTHR34837:SF2 Search for proteins/transripts with this domain View external data on PTHR34837:SF2	1	181	181	2.0E-104	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	22	59	38	-	–
Gene3D	G3DSA:2.30.29.30 View details on G3DSA:2.30.29.30 Search for proteins/transripts with this domain View external data on G3DSA:2.30.29.30	44	173	130	2.4E-9	IPR011993 Show description in modal box View details on IPR011993 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF50729 View details on SSF50729 Search for proteins/transripts with this domain View external data on SSF50729	53	171	119	2.91E-12	–
ProSiteProfiles	PS50003 View details on PS50003 Search for proteins/transripts with this domain View external data on PS50003	59	174	116	8.535	IPR001849 Show description in modal box View details on IPR001849 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00233 View details on SM00233 Search for proteins/transripts with this domain View external data on SM00233	60	176	117	0.0076	IPR001849 Show description in modal box View details on IPR001849 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0441300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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