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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0007100 |
| Transcript ID | LotjaGi3g1v0007100.12 |
| Related isoforms 11 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Topless-related protein 1; TAIR: AT1G80490.1 TOPLESS-related 1; Swiss-Prot: sp|Q0WV90|TPR1_ARATH Topless-related protein 1; TrEMBL-Plants: tr|A0A151SPV1|A0A151SPV1_CAJCA Vegetative incompatibility protein HET-E-1; Found in the gene: LotjaGi3g1v0007100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:848873..856657) extracted from Lotus japonicus Gifu genome v1.2.
ATCACATTTACTTTGATCACATTAATTGATTAAATGGTTTTCTTTTCTTTTTGAAAATATTAGGCTTGAGCAGGAGTCTG GATTTTTCTTTAACATGAAGTATTTTGAAGACGAAGTGCACAATGGCAATTGGGATGAGGTTCAGAGGTATCTCTCTGGT TTCACAAAAGTAGATGATAATAGGTACTCTATGAAGATATTTTTTGAGATAAGAAAGCAGAAATACCTGGAGGCATTGGA TAAGTAAGCTCACAACAAGTTTACATTTATATTCTGTCGTTGACACTTAACAGGGTTTGTTAGTGTAGGTATGGAAACTA AGCTGCTTTTAATTTAAATTTTGGTAGGCATGATCGGTCCAAGGCAGTAGAAATATTAGCGAAGGATTTGAAAGTATTCG CCACATTTAATGAGGAGCTGTTCAAAGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGTACGAAATTGTAGTTTCT TACTTAATTATTAAACTTCTGTGTTAGATGTAGAGAGCAAGTGATTTCTGCTTTTAGTTTACAGGGAAAACGAACAATTG TCTAAGTATGGAGATACGAAATCTGCTAGAACAATCATGTTGGTTGAGCTCAAAAAGTTGATCGAGGCGAATCCCTTATT TCGTGACAAATTGCAGTTTCCCAACCTTAAAAATTCAAGGTTACGGACTCTCATCAATCAGAGGTAATTCAAGGAGCGAT GGCCATGATTTTCCTTTTGGTTATCTTTACTTACTATCGGAAGAGCTCATCTACCATATTTATATCTCTGTTTTCTTCGG TGAATACATAGATCGTGTTATAAATTGTTACCGAACCACTTAACTCATTACTAGTATTGCTTTATCAATGCTAGGATTCG TAATTTTATTCATAGAACGTTTCGAATACCAATTGTTGCAATATTTGGCTGTGCAGTGCCGGCTTCAATGCATTTTTTTC AGCTAAATGATGGGTCATTCTCTGTGTACTGGAGATACTCCATACGTGTTTGCAGTGAAGATACTCTTTAAACAAATGAT CAATTTATTTTATTTTTTGGATAACTGATTTCCTTCTTAAAATTGAAATTACAGCTTGAATTGGCAGCATCAACTTTGTA AGAATCCTCGGCCGAATCCGGATATAAAAACTCTTTTTGTGGATCACTCTTGTGGACAACCAAACGGTGCACGGGCTCCA TCACCTGCTAATAACCCACTGCTAGGATCCTTACCAAAGGCCGGAGGATTTCCTCCTCTTGGTGCACATGGGGTAGGTTA CCTAACTCATTTGGTTTAGGCTTACTTACATTTTGGTTCCTATAGTTTTGAAAATGTGTTATTTTGATCTCTATAGTTTC AATTGCTCCAATTAAATCATACTTTTAAAACTGAATAAATTTGGTCCATATGTTAATTTGTCATCTAATAACTAACGGAA AAAATGGACATGTATCACAAGTTTTGAGATGTAAAGTGACATAAATTGTCTTAATATGACATTCACGTATAAAATTGTGA TCCGCGTCAACTTTTTCGTTAATTAGTAGATGACAAGTTAATGTTTGGACGGTATTTGTTCAATTTTGAAAGTAGGACTT AATTGGAGCAATTGAAACCATAGGAACCCAATCACGCATTTGTAAAATTAGAGGGACCAAAAGTGCAATTAAGCCTTTGG TTTAATAGGGTTTGCATAACATGTGATATATAGGTTCTTATTTTTGTGCTGGACTGTGTAGCCCTTTCAAACTGCTCCAG CCCCTGCGCCGTCACCCCTGGCTGGCTGGATGTCGAATCCTAATCCTACCACGGCAGCACATGCCGCAGTTTCTGGAGGA CCAGCTATCGGTCTTGGTGGACCATCAATTCCTGGTACTCAGTTCTTTTGCTGTCTGTTATCTCCAACTCTTAATGCCTA ATGGTAATTAAAATATTCCGACTATGTTAATTACGTATAGTCTTTGACCTCAGTTGTTTCGTTGCCTTCTCAAGCTGCTT TGAAGCACCCGAGGACACCTCCAACCAACCCTTCTGTTGACTACCCATCGGGAGATTCCGATCATGTTTCTAAGAGAACA AGATCAATAGGAATGTCAGACGAGGTAAGCTAGTATCTTTAATGGAAATATGACTCGTGGTCTTGTAATTCATAGTTTCG TACCCATGCAAGTTTTTACCTGTAACATTTCTACTACCAATCTTTCATCATTTTGTGCAGGGAAATTTACCTGTGAATGT TTTGTCAGCAACATTCCCATCTCATGGTCATGGTCAGGCTTTTAATGCACCTGATGACTTGCCAAAGACTGTCCTGCGAA CTCTAAACCAAGGGTCGTCAACTATGAGCATGGATTTTCATCCAGTTCGACAGACTTTACTTCTTGGTTGGCTGCGCTTC TAATGCCTTTTAATACTGTTGTTGACTTGTTTTGATTGAATTTATGTACCATTTATACTGTCAATTGACTGAGTTATTTT CTTGATGCAATGTGTCAGTTGGTACTAATGTGGGAGACATTGCTTTGTGGGAAGTGGGTTCTAGGGAGCGGCTGGTCTTA AGGAACTTCAAAGTTTGGGATCTAAGTGCTTGTTCAATGTCATTTCAGGTTGGTCTTTGTCATCTCTGACTCTGTCCATT GATATTCTAGATGGATATTTGTACCAAACCATGAAACTTGTAACTGAAAATAAAACTAATCATGATCAATTCAGGCTGCT CTTGTCAAAGATCCAGGCGTCTCTGTCAATCGTGTGATTTGGAGTCCTGATGGGGCTTTATTTGGTAAATTGAGTGTTTG AAAAAATAATTGAATTTGATATATTGATCTTAGAATGCATACTTTAAAAAGTAAACTCAATCATGAATATGCATTTGTTT GATAAACAGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTACCATGGTGGGGATGAAGTACGACAGCAACTG GAGGTATACAAACACTCATAAATAATGAAGATTTTTCGTTGCTTTATGTTCTATTTTTAAGTTCTCATAATTGCTTACTT ATGAACTTTCTTTATAGATTGATGCGCATGTTGGCGGAGTAAATGATATAGCATTTTCTCACCCAATTAAGCAACTAAGT GTGATAACATGTGGTGATGATAAGACCATTAAGGTAGGTTTATCAGATCATAGGCTTGGTTTGCTAATATGAGTGTACCG TAGGTTGCTAACTATGTTATGTAACTTAAGGTCTGGGATGCTGTTTCGGGTACAAAGCAGTATACTTTTGAAGGTCATGA AGCTCCCGTTTATTCTGTCTGCCCGCATTATAAAGAAAACATTCAGGTAAATGTTGACTTTAGTACCTTCGGTAAAAATG TTAGTTGAGTTTATTGGTATGATTCGGTTATCTCACTTAGTAGAGTGCCACAATGAAAATCTTCTGAATATGTTTCTAGT TGGTTTTCTTGCTGATACTCTGTCTTAAATGTTGTAGTTCATCTTTTCCACGGCATTGGATGGAAAGATAAAAGCATGGT TGTATGACAATATGGGATCTCGTGTTGATTATGATGCACCCGGCCGTTGGTGTTCAACTATGGCCTATAGTGCTGATGGT TCAAGGTCTATATTCTCAACCATGGCTACTTGTCCTCTGAATCTTATTGTTTGGTTAAATTATAATATCTACTTTGATCG CATTCTGTCCTGACATTTCTCTTTGAATGTATACCATAGGCTCTTTTCATGTGGAACTAGCAAGGATGGGGAATCTGCTA TTGTTGAATGGAATGAAAGCGAAGGAGCTTTTAAAAGGACTTATCAAGGTTTTCGAAAACGATCTTTGGGTGTTGTACAA TTTGATACAACCAAAAACCGATTTTTGGCTGCCGGTGATGATTTCTCCATTAAATTTTGGGATATGGACAATATTCAGCT TTTGACAACTATTGATGCTGATGGGGGTCTCCCTGTAAGTTCATTAATTTATTGCAAATTAGATTCTGGTTTCTGGAATA GTAGTTACTGAATGTCTGATCGTTTCCTTATCTGAATTCTAGGCAAGTCCGCGTATCCGTTTCAACAAAGATGGATCTCT TTTAGCCGTCTCTGCAAATGAGAATGGAATTAAAATCTTATCCAATGAAGATGGTATTCGTTTGTTGCGTTCATTTGAGA ATTCTATGTTTGATGCAACAAGAACGTCGGAAGCCATGACAAAGGTAGACTTATAGATATTTTCCTGACCTCTCATTAAC AAAGCCTGGTCTGACTCATGGTATTTTTCGCAGCCTACAATAAATCCAATTTCAGCTTCCGCCGTTGCTGCCTCTAGTGC TGCACATTCAGATAGGGCCTCATTTGCGGTAGCTATAACTGGAATGGTTAGTTTTTCTTGTCTTTTGTATCAGTAGGATC TGTTATTTACTTGAATGCTACTAGTAGCCTTTTATTTTTTAATGTGTCTAGTTTCTGTCTCATTTCACAACTCTTATTTG TTAGATTAATGTATCCCAATAGGAAAAAAATTAAAAAAAAGGTTAAGCATCTCATTGTGATTGTGATGATGTATTTATTA TCACTGCTTTTGTTGTTGTTAATAAACTGTTTCAATTTCAACTCATCAGAATGGGGATGCCCGGAACCTGGGTGATGTTA AACCTAGAATAAGTGATGAATCAAATGACAAGTCAAAGATATGGAAGCTCACCGAAATCAATGAACCTTCTCAATGTAGA TCCTTGAAGCTACCTGAGAATCAAAGAGTAACCAAGGTATGTTATTTACTTCCTAATTGTATTTATTTTAAATATCCACA TGACTAATTATATCAAGCACCCTGTCATTAGTGTTTTTATGTCAATGGAATTTGTCTTTTTTTTTTTTATAAACTCAGTT TTAATTGGATAACGAAATGCTGGATATGTGTTGTGTGTGCGTGATTGTGTATTTCCTTGTTATGCCTTGGATTATTGTAA CTGCGTGGATTCCAGTCTCCTCTATCTGCAAAATATTTGGGGTACATTATTTTCATATCAAAGCCAGGTAGCATGGTGTT AACTGTGTTATGATTTCTCTGAAAACCATGAGCATTGGGTACCTTGTAACATGAATACCTTACAGAGTGAGCTTTTTGCA AGATCGTCCTGCTTTTGTTTGATGTACTTTCTTTGGGAAAAGCTTGCCTGTCCATCTTAATCTGTCATTTTTATTAACAC TTCGATATAATATGGGTCTTGGTGCATAAAAATGTGTGCAGATGCAGTTATTTATTCAATTAGCTTGCTGTTTCCCTTAA GTTTTGCATCTTATTTGTAATTTATTGTAGTCTTTTATGTTAATGTCACAATACATTTCGTCTTAGAGGCGTTTAAGCAT AGAATAATGAAAATTTAACAAGCCTTAGTAGCTTATGCTCCAAACTGAAATTGCTCTGAACTTCTAATTGTCTATATCCT TGTGATGACAGATATCAAGGTTGATATACACTAACTCAGGTAATGCTATTCTGGCATTAGCTTCAAATGCCATTCATCTT CTCTGGAAATGGCAACGAAGTGACCGCAATTCACCTGCCAAGGTGTGAAAATATGTAAATTTACTTTTGTCTGATTACTC TATTCACAAAATTGGGAATAGAAATTGCATTATTCTCTGATGTTTATATTTATTCCTGTAGGCAAGTATCACTGTGCCAC CTCAGTTGTGGCAACCTTCAAGTGGCATCTTGATGACTAATGACATTAACGATAACAATCATCCTGAGGAAGCTGTTCCC TGCTTTGCTCTGTCCAAAAACGATTCTTATGTGATGTCAGCGTCGGGAGGGAAGATTTCTCTGTTCAATATGATGACATT TAAGGTGAGCTATGATCCCTAGTCACGATTCAAGGCTTTAATCGGTTTGCAACTGACACATTTTGATGTTCTTGGCCAAT TGCAGACAATGGCAATGTTCAAGCCAGCACCACCTATGGCAACCTTTCTGGCTTTCCACCCTCAGGATAACAATATAATT GCTATAGGCATGGATGATTCTTCGATTCAGATATATAATGTTCGTATGGATCAGGTATCATGCTGTCTGTAAACATTTCC TTTTGAGTTTTGATTTATGATTTGAGTAATTAGGTGCTTATACATGATTTTTTTCTTTGCAGTTTAAAAGTAAACTCAAA GGTCATTCTAAAAGAATAACTGGTCTCGCTTTTTCGCATATACTGAATGTACTAGTTTCTTCTGGGGCAGATGCTCAGGT AATAATTGTCCATTGTATATCTGTGTCTGGATTCTGGAATCTGTCTTTTATATGATTAAATTGCATGATATTATAATTTT GAATCTGTAACTAGTTTTCAGTTTTTCACAGATTATGACTCCCTTGGAGATGTTTTTTGCAATTCAAATTTCATTAGTAA TCATATGGTATCTGTCTATTGTGCAGCTTTGTGTGTGGAATACCGATGGATGGGAAAAGCAGAAAACTCGGCTCTTACAA CTTCCTGCTGGGAGGACTCCACCGTCGCAGGCAGATACCCGTGTACAATTTCATCAGGATCAGGTCCGCTTCTTGGTTGT ACATGAAACTCAGCTTGCAATTCATGAAGCAACTAAACTAGACTGTTTACACCAGGTTAGTTCAGGAAGTTCAGTTTTAT GGTAACTGTTAATAGTTTAATTTTATCTTTTGTCTGATGCATAGAACCTGGATTGCAGTGGTTCCCAAGAGATTCTGCCG CACCAATATTGCATGCGACTTTCTCTTGTGATAGCCAGCTGATATTTGCCAGCTTTTTAGATGCAACAATCAGTGTATTC AGTGCTACAAACCTTAGATTACAATGCCGGATCAATCCTTCTGCTTATCTTTCTGCAAGTGCCAGGTATTATTTCTTGCT TGTTAGACGTTCTATCGCATTTTGCACCACGCTTGTTCCAAGTTATTAACGGTTTTCTTAGTTTATATTTTTGACAATGT AGAAAAAAATTAAATTCCCAGGTAGAAATTGCATTTACAGTTATGATTTCATTTTCTTTTGGAAGAAATTGGGTTGTAAA TATTTAAAATCCAAAGCAGTTCTTGTTCTTCTACCTCTATTCTTTCTTATCTCATTTTGTTATTCTATTTTGGTAGAAAA ACCTCACTTTAGTTGGAAATATTTTCTTGTGGATGAATTTTAATTTTTTCACAACACTTTGAGGTTAGTGGTATGCAGAA TCACTGCTTACTTGTAAAGATTATATAACATGAATAAATTAGAGGAGATTGTCAAGTATGTTTTACTTTAAAAAGTGTTT CCACAAAATAGAAGGAAGTTAGTCTTCAGTGAATCTAATTGTTCTAATGCACATAATTCATTGATTCAGAGTTCGCTTGT TTTATATTAGAAACATCAAAATGTTTTTTGTAGTTCTTTTCTTTTTCGTTCTTTGACCAGAGTGCCCCCCCCCCCCCCCT AAGGGCAACACTAATCCGGTTTGGGAAATTGACAGTCCCTCCCAACAGATTATTTTTCTGGGGTTTGAACTTGTGACCTC ACCTTTTTTGTAGTACTTGTTGTTGAATACTATGCTTCTGTTTCTTTGCAGCAATGGTAATGTGCAACCCCTTGTAATTG CTGCACATCCACAAGAACCAAATCAATTTGCTGTAGGACTGTCAGATGGTGTTGTTCATGTCGTTGAACCCCTTGAGTCT GAAGGCAAGTGGGGTGTGCCTCCACCTAGTGAGAATGGGTCAGCAAGCAATGTAGCAGGGGCAGCTTCTTCAGTTAGAGC TTCTTCAGATGAAGCTCAGAGATAA
CDS sequence (LotjaGi3g1v0007100.12) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAATGACATTAACGATAACAATCATCCTGAGGAAGCTGTTCCCTGCTTTGCTCTGTCCAAAAACGATTCTTATGT GATGTCAGCGTCGGGAGGGAAGATTTCTCTGTTCAATATGATGACATTTAAGACAATGGCAATGTTCAAGCCAGCACCAC CTATGGCAACCTTTCTGGCTTTCCACCCTCAGGATAACAATATAATTGCTATAGGCATGGATGATTCTTCGATTCAGATA TATAATGTTCGTATGGATCAGTTTAAAAGTAAACTCAAAGGTCATTCTAAAAGAATAACTGGTCTCGCTTTTTCGCATAT ACTGAATGTACTAGTTTCTTCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACCGATGGATGGGAAAAGCAGAAAACTC GGCTCTTACAACTTCCTGCTGGGAGGACTCCACCGTCGCAGGCAGATACCCGTGTACAATTTCATCAGGATCAGGTCCGC TTCTTGGTTTGGTTCCCAAGAGATTCTGCCGCACCAATATTGCATGCGACTTTCTCTTGTGATAGCCAGCTGATATTTGC CAGCTTTTTAGATGCAACAATCAGTGTATTCAGTGCTACAAACCTTAGATTACAATGCCGGATCAATCCTTCTGCTTATC TTTCTGCAAGTGCCAGCAATGGTAATGTGCAACCCCTTGTAATTGCTGCACATCCACAAGAACCAAATCAATTTGCTGTA GGACTGTCAGATGGTGTTGTTCATGTCGTTGAACCCCTTGAGTCTGAAGGCAAGTGGGGTGTGCCTCCACCTAGTGAGAA TGGGTCAGCAAGCAATGTAGCAGGGGCAGCTTCTTCAGTTAGAGCTTCTTCAGATGAAGCTCAGAGATAA
Protein sequence (LotjaGi3g1v0007100.12) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTNDINDNNHPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAMFKPAPPMATFLAFHPQDNNIIAIGMDDSSIQI YNVRMDQFKSKLKGHSKRITGLAFSHILNVLVSSGADAQLCVWNTDGWEKQKTRLLQLPAGRTPPSQADTRVQFHQDQVR FLVWFPRDSAAPILHATFSCDSQLIFASFLDATISVFSATNLRLQCRINPSAYLSASASNGNVQPLVIAAHPQEPNQFAV GLSDGVVHVVEPLESEGKWGVPPPSENGSASNVAGAASSVRASSDEAQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 8.2E-166 | – | |
| PANTHER | 1 | 289 | 289 | 8.2E-166 | ||
| SMART | 1 | 39 | 39 | 75.0 | ||
| Gene3D | 6 | 262 | 257 | 1.4E-25 | ||
| SUPERFAMILY | 11 | 254 | 244 | 4.21E-32 | ||
| SMART | 42 | 82 | 41 | 15.0 | ||
| ProSiteProfiles | 49 | 133 | 85 | 14.002 | ||
| SMART | 85 | 124 | 40 | 1.5E-5 | ||
| Pfam | 90 | 124 | 35 | 0.0012 | ||
| ProSiteProfiles | 92 | 133 | 42 | 11.879 | ||
| ProSitePatterns | 111 | 125 | 15 | - | ||
| SMART | 158 | 198 | 41 | 17.0 | ||
| SMART | 207 | 251 | 45 | 240.0 | ||
| MobiDBLite | 255 | 289 | 35 | - | – | |
| MobiDBLite | 265 | 289 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0007100.12, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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