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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0188900 |
Transcript ID | LotjaGi3g1v0188900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|G7ITZ5|G7ITZ5_MEDTR Aconitate hydratase; Found in the gene: LotjaGi3g1v0188900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27126448..27132377) extracted from Lotus japonicus Gifu genome v1.2.
TTTCATTTGATCTAACACCTGTGATTTTATCGTTGAATGTGAATTCTGTTTTGCTTTTTTGTTTTCTTGGAATGGAATCT TCTGTTTGACTATGAGTGAATGATTAGTACGTTAACTTTTTGCGTTTAACCTTGCTTTCTGTTTTCTGTTGAATATCGTG ATTGTTTGAAGGATCGTGAAGTTTGCCTTATCTGTTGAATCGTCGTTGTTTGAATTTGTAATATGTTGGTGCTGAATTTT TGTGTGTTTCTGAGTGTTGTTTTTGTCATCTAACATATTTGCAATTGCTGCAGCTGGTGAAAATCCTTTCAAAGGAAACT TGACGAGTCTCCCCAAGCCGGGTGGCGGCGAGTTTGGAAAATTCTACAGCCTTCCTTCTCTCAACGACCCACGAATTGGT AATTTGCTGGTTCCATTTTAGTTCAGTGGTTCGGTTTGAATTGGGTTTTCTTTTTGTTGTCTTTATTACTAGAATTTTGG GTGAAATGTGTGTTTTTGTCCCTTTATCATGTGTTTGATAAAGGGATCAGTCTCTCCTTCAGAATTGCACATTCTCCTTG CATTTGCTTAAGTAGGTAAGTTGCTGATGGTATCAACTTTTGTTGGTATATGACAGATAGGTTGCCATATTCTATCAGAA TTCTCCTTGAATCTGCGATTCGTAATTGTGACAATTTCCAAGTTACCAAAGAAGATGTTGAGAAGATTATTGACTGGGAA AGCTCTTTTGTGAAGCAAGTTGAGATTCCTTTCAAGCCCGCTCGTGTACTCCTGCAGGTACTTTATTCAATTCTAGGTGC AGCGAAAGAGTTATTATCATGGATGGGTGATGTTAAGTAGTAATACACATTCCTTCATTTAACACCTATCCTTTTTTTTC CTTCCCTCAGGATTTCACTGGAGTGCCAGCTGTTGTTGACCTGGCTTGCATGCGAGATGCGATGAATAAGCTTGGCAGTG ATTCTAATAAGATTAATCCTCTGGTATACACAATTTCATCACTTGTGATTTTAATTATGTTTTAAAAGTTCTCAGATTCA TAGGAGACAAGCAGGGTTGTACATGGTATTAGATTATGCTTAATATGTTTACAACTTGGTTTGATTTTAAACTTACTTTA AGGTCAAGTATTGTTGGCCGAGTTGATTTTGAAATTATATTTGTGAGAAAGAGAGACAATGTGAAACTCTTACTAATTAG ATTGAAAATAACTGTTATTCTTTTTGAAAAAGTTTGAGATGTTTTTGAACCATTTTGCACTCCAAGATGGATCATATTAA AAATATTCTTTTAAGTTTGAGCAATTACACACTACAAATTTAAACCATATAATTTTTGTGAAATCACAACAACCTATCTC CACAGTACCCAGTCATGGTGTTACCGAGGAGTTAAACAAGCTCTTTTTAAAGCATATTTTGACTGTACTTTAGGCTTGCT ATAGTATAAGTGGCTCTGAGTCTGAACATTGCTTGTTGCCAGGTTCCTGTTGATCTCGTCATTGATCATTCAGTTCAAGT TGATGTGGCGAGGTCAGAGAATGCAGTGCAGGCTAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTCC TAAAATGGGGTTCGACCGCGTTCCAAAACATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTAAGTTCAGAA TCAGACATATAAAAAGATGTCATGGAGTATATTCTTCATTGTTTTTGGTTGTTGATACTGCTTATGATGTCTCGAATTCC AGGTCAATCTTGAATACCTCGGACGTGTTGTATTCAACACTGAGGGCGTACTCTATCCTGACAGTGTGGTTGGCACTGAT TCACATACAACTATGATAGATGGACTTGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCAGAGGCAGCAATGCTTGG CCAGGTATGATTTAAATATAATAAAATGTTGATTATATAAAAGAAGTAATGAGCGGATGGTTTATTCTTTTAAGTTACAT GTTTGTGTACTTTTTCTATTAACTTTGTTGATCCTAATTCTGTGTGCTATGGTAATGACAGCCTATGAGCATGGTGTTAC CCGGTGTTGTTGGATTCAAGTTGTCTGGAAAATTGCGCAATGGTGTTACAGCAACCGACTTGGTTCTAACTGTTACACAA ATACTTAGGAAACATGGTGTTGTAGGGAAATTTGTGGAGTTTTATGGTAGTTAAGTTCTCCTGCATCTCCTTATTTTCAG CTTGTGCTGCCCTGTTCCAAATAATGACCTGTTCGAATGGTTTTTGTTCTATAGGTGATGGTATGCGCCGATTATCATTA GCTGACAGGGCCACTATTGCCAATATGGCTCCTGAATATGGAGCAACCATGGGCTTCTTCCCTGTAGATAATGTGACGCT ACAATACCTCAAGTTAACGGGAAGAAGTGAAGAGACTGTGAGTATCACCTTATTTATTATTTCCCAATGATGTAAAATGC CTATAGGATTAGCTAACCTTCATATTTGGCTGAACATAGGTGGAAATGATAGAAGCCTATCTCAGGGCAAACAAAATGTT TGTGGACTATAATGAGGTAATTCTAGTTGAATGTACATTCCTTTTAACAAAACAAGTACGTACTAATGTTAGAGGTATAT AATGCTAATTTGGTTTCCATAAATTCAGCCTCAACAAGAAAGAGTTTATTCATCCTATCTTGAATTGGACCTTGATGAAG TTGAACCATGTATCTCAGGGCCAAAGAGGTAAGACAGTAAGAGACTTGCTTTACATACTGCCTGGTATTTTAATGTGAGT ATTTAAACTTCTCTTTTAAGTGACAATTCATACTAAATGATACCCTGGCCAGGCCTCATGATCGGGTGCCTTTGAAAGAA ATGAAGACTGATTGGCATGCTTGTCTTGATAGCAAAGTGGGGTTTAAGGTTAGTAATGCTGTGATATTCAAATATTGTTC TATTTTTTGTCTCATGAAAAGATGATTTAATGGTTTATCTATATAGTGTATTAGCTCGCAACCATTTGTTCAAAGCAAAA ATGCAACTGTCTGCCCATTTCGTTGTTTTGTGATAAACTACTGACTGGGTTAAATTTTGTCAATTTTCAATTGTGTGCCT ACAACTACAACGAACATCTGAGATCGACATCACAGAACAAAGTTGAAATTGTAGCCTCAAAACACAAATTGTATTTTACT ATGAAGAAAAGCAAATCAACTTGTTTAACCTTTTTTCAATAATCAAATGGTAACACTGTGTCAAGGGGAAAAATTACCCT TCTGTTTCCTGAATCTGGAATCTAAAAAGTGATTATTTTACTGGAAATCAGTCCTATTTTTGGAAAAAAAATTCTATCTC TATCATCTGTCACTTTCTATGATCACAGTAGCCAGATTTCAGAGAGCATTATAATAATTAGAATGCAATTAACTTCTTTT CTTAATATTAGTCATTCTGATTGTTTCAAGTTGCAGACCTTCAACTTGAAGGCGCAGTTGCAGTCACAAAACATGTAATA ATAGTTATCCTACATGTTTTCTTTCAATACAGGGATTTGCAATACCGAAAGAAGCACAAGGAAAAGTTGCAAAGTTTGAT TTTCATGGGCAGCCAGCAGAGCTCAAACATGGAAGCGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCC AAGCGTTATGCTTGGGGCTGGTCTTGTTGCAAAGAAGGCTCATGAGTTAGGCCTGAAGGTTAGGCGTTGATATAAATATT TTAGAAACTGTCTTTCTGCTCATTTTCAACATGATATCTTTACTATGATACCACATTTCGTGGCAACTGTAAAAAGGGCA TTGTTTTCCTTTTATGTTGTCCTCTTCTAGGTAGTAATTGTTGAAATTCTCACTGTTTGCCAGGTTAAGCCTTGGGTGAA AACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACTAAATATCTGCTTCAGAGGTATTTCACACTTCTTATTATAATATTAT ATTATTCTTGTAATTGGTATTATAATGTAATTTCCCTCTACATTCTGCACAATTTTGGAAAAATATATACCAAGTTAAAA TTTGTTCTTTACTTTCTTTGCAGTGGCCTGCAAAAGTATCTAAGTGAACAGGGTTTCCAAATTGTTGGATTTGGTTGTAC CACGTGCATTGGCAATTCAGGGGATTTGGACAAATCAGTTGCTTCTGCTATCTCAGAAAATGGTAATTGGAATATCCTAA AAAATATTATGTCTATAACTGTAGCTGATTTCTATGCAATTCTTACTTTTTCTTTTAACATTTAGATAACATCTTAATCA TATTCTGCTTTAAATTACCTGTACTAATTAATTCTTATATGGTTTCATGCAGACATTATAGCATCTGCTGTGTTATCTGG GAACCGGAATTTTGAGGGCCGTGTGCATGCTTTGACACGAGCTAACTATCTTGCCTCGCCTCCGCTGGTTGTTGCTTATG CGCTTGCTGGAACGGTATGTATGCTTTCTTAATATTTCTAATATATGTATGAAATGTTTTTGGTCCTTGCTTCTTCCATA TTGTCCTATTTTCATGTCTCTTTTAAGACTAGTTCTAAGATTATTTATGCCAAGGACTTGGTAAAAAACAAGTATTGAAG TTATTGGAGGCTAATTACAAGCATTGATATTTTCTGTTAGTTACTTAATAAGATATCCACCCTCTTTCATTTACATTTGT TCAGCCTCATGCTATATGTAATGTATTAGGACTCAAGCTGAGTGCCCGAGTCCAAATGCATTCTTTATTAGCTTTTTGGT TTTCCTTTTCTCAAATTCTCCTATCAAACACTTCCTTAGACCCGACTATTTAGATACTCACATCCAGAAGTCTGGATCTT GACTTACACTTGGCAATGACTTTGGTAGTTTTTCTGTTTTCTCTGACATTGAGTTTCATGTCACAATAATATTTAGGCAT TTTCTCGTGTTTATAAGCTTTATTTAGAACCTTGTTTTATTGTTGTAGGCATGCTTTATTTGATACTATATTAAGGTTGA TCAAAATTTGGAGTTTATAATATTGATTTCCCTCCAAATGTTGTTAACATTCATCACTCGCCTTTTGGTCAAATTTCCAG GTTGACATTGATTTTGAAAAGGAGCCAATAGGTACAGGGAAAGATGGCAAAAATATCTACTTAAGAGATGTTTGGCCATC CACGGAAGAAATTGCACAGGTGAATGATGTCCACTGTTCTCATTATTTGAAATTTACTCTGAAGATTTGAGTCGTTTGAC ATTGTGTGCAGCAAAATTAACTTTGGTTGTTTGATTCGTAGGCTGTCCAATCGAGTGTGTTGCCTGACATGTTCCAAAGT ACATATGAAGCTATTACCAAGGGTAACGCTATGTGGAATCAACTACAAGTTCCTGCTGAGAAGCTGTACTCATGGGATCC CAACTCAACATATATTCATGAACCTCCGTACTTCAAGAACATGACCATGGATCCTCCTGGCGCTCATGGTGTGAAAGATG CCTATTGCCTGCTAAATTTTGGTGACAGTATAACAACTGATCACATTTCTCCTGCTGGAAGCATTCATAAAGACAGCCCT GCTGCAAAATATCTTCTGCAGCGTGGGGTTGAACAGAAGGACTTCAACTCTTATGGAAGTCGTCGTGGCAATGATGAAAT TATGGCAAGGGGAACCTTTGCTAACATTCGTCTTGTAAACAAGCTCTTGAACGGGGAAGTTGGCCCCAAGACTGTTCATA TTCCCACAGGGGAAAAGCTTTCCGTGTTTGAAGCAGCAGAGGTGAGCTATGCACTACCCAAGAATTACTTGTTTTTTATT ACTGCTTTTGAACTTCTCAAGTGGCTGTCATATTATGCCATATCATCATATTTTGAAATGGTCTTTTCTTAATTGCTTTC TAAAATTTAA
CDS sequence (LotjaGi3g1v0188900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAGATGCGATGAATAAGCTTGGCAGTGATTCTAATAAGATTAATCCTCTGGTTCCTGTTGATCTCGTCATTGATCA TTCAGTTCAAGTTGATGTGGCGAGGTCAGAGAATGCAGTGCAGGCTAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGA GATTTGCTTTCCTAAAATGGGGTTCGACCGCGTTCCAAAACATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAG GTCAATCTTGAATACCTCGGACGTGTTGTATTCAACACTGAGGGCGTACTCTATCCTGACAGTGTGGTTGGCACTGATTC ACATACAACTATGATAGATGGACTTGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCAGAGGCAGCAATGCTTGGCC AGCCTATGAGCATGGTGTTACCCGGTGTTGTTGGATTCAAGTTGTCTGGAAAATTGCGCAATGGTGTTACAGCAACCGAC TTGGTTCTAACTGTTACACAAATACTTAGGAAACATGGTGTTGTAGGGAAATTTGTGGAGTTTTATGGTGATGGTATGCG CCGATTATCATTAGCTGACAGGGCCACTATTGCCAATATGGCTCCTGAATATGGAGCAACCATGGGCTTCTTCCCTGTAG ATAATGTGACGCTACAATACCTCAAGTTAACGGGAAGAAGTGAAGAGACTGTGGAAATGATAGAAGCCTATCTCAGGGCA AACAAAATGTTTGTGGACTATAATGAGCCTCAACAAGAAAGAGTTTATTCATCCTATCTTGAATTGGACCTTGATGAAGT TGAACCATGTATCTCAGGGCCAAAGAGGCCTCATGATCGGGTGCCTTTGAAAGAAATGAAGACTGATTGGCATGCTTGTC TTGATAGCAAAGTGGGGTTTAAGGGATTTGCAATACCGAAAGAAGCACAAGGAAAAGTTGCAAAGTTTGATTTTCATGGG CAGCCAGCAGAGCTCAAACATGGAAGCGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCAAGCGTTAT GCTTGGGGCTGGTCTTGTTGCAAAGAAGGCTCATGAGTTAGGCCTGAAGGTTAAGCCTTGGGTGAAAACAAGTCTTGCTC CAGGCTCTGGAGTTGTTACTAAATATCTGCTTCAGAGTGGCCTGCAAAAGTATCTAAGTGAACAGGGTTTCCAAATTGTT GGATTTGGTTGTACCACGTGCATTGGCAATTCAGGGGATTTGGACAAATCAGTTGCTTCTGCTATCTCAGAAAATGACAT TATAGCATCTGCTGTGTTATCTGGGAACCGGAATTTTGAGGGCCGTGTGCATGCTTTGACACGAGCTAACTATCTTGCCT CGCCTCCGCTGGTTGTTGCTTATGCGCTTGCTGGAACGGTTGACATTGATTTTGAAAAGGAGCCAATAGGTACAGGGAAA GATGGCAAAAATATCTACTTAAGAGATGTTTGGCCATCCACGGAAGAAATTGCACAGGCTGTCCAATCGAGTGTGTTGCC TGACATGTTCCAAAGTACATATGAAGCTATTACCAAGGGTAACGCTATGTGGAATCAACTACAAGTTCCTGCTGAGAAGC TGTACTCATGGGATCCCAACTCAACATATATTCATGAACCTCCGTACTTCAAGAACATGACCATGGATCCTCCTGGCGCT CATGGTGTGAAAGATGCCTATTGCCTGCTAAATTTTGGTGACAGTATAACAACTGATCACATTTCTCCTGCTGGAAGCAT TCATAAAGACAGCCCTGCTGCAAAATATCTTCTGCAGCGTGGGGTTGAACAGAAGGACTTCAACTCTTATGGAAGTCGTC GTGGCAATGATGAAATTATGGCAAGGGGAACCTTTGCTAACATTCGTCTTGTAAACAAGCTCTTGAACGGGGAAGTTGGC CCCAAGACTGTTCATATTCCCACAGGGGAAAAGCTTTCCGTGTTTGAAGCAGCAGAGGTGAGCTATGCACTACCCAAGAA TTACTTGTTTTTTATTACTGCTTTTGAACTTCTCAAGTGGCTGTCATATTATGCCATATCATCATATTTTGAAATGGTCT TTTCTTAA
Protein sequence (LotjaGi3g1v0188900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQ VNLEYLGRVVFNTEGVLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATD LVLTVTQILRKHGVVGKFVEFYGDGMRRLSLADRATIANMAPEYGATMGFFPVDNVTLQYLKLTGRSEETVEMIEAYLRA NKMFVDYNEPQQERVYSSYLELDLDEVEPCISGPKRPHDRVPLKEMKTDWHACLDSKVGFKGFAIPKEAQGKVAKFDFHG QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLKVKPWVKTSLAPGSGVVTKYLLQSGLQKYLSEQGFQIV GFGCTTCIGNSGDLDKSVASAISENDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK DGKNIYLRDVWPSTEEIAQAVQSSVLPDMFQSTYEAITKGNAMWNQLQVPAEKLYSWDPNSTYIHEPPYFKNMTMDPPGA HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLQRGVEQKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG PKTVHIPTGEKLSVFEAAEVSYALPKNYLFFITAFELLKWLSYYAISSYFEMVFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 1 | 530 | 530 | 6.41E-210 | ||
CDD | 1 | 467 | 467 | 0.0 | – | |
Gene3D | 1 | 269 | 269 | 1.4E-139 | – | |
TIGRFAM | 1 | 658 | 658 | 0.0 | ||
PANTHER | 1 | 658 | 658 | 0.0 | ||
PANTHER | 1 | 658 | 658 | 0.0 | – | |
Phobius | 1 | 667 | 667 | - | – | |
Pfam | 1 | 465 | 465 | 3.2E-171 | ||
PRINTS | 44 | 57 | 14 | 5.7E-47 | ||
PRINTS | 68 | 76 | 9 | 5.7E-47 | ||
PRINTS | 97 | 110 | 14 | 5.7E-47 | ||
PRINTS | 111 | 126 | 16 | 5.7E-47 | ||
PRINTS | 173 | 186 | 14 | 5.7E-47 | ||
PRINTS | 187 | 200 | 14 | 5.7E-47 | ||
PRINTS | 269 | 283 | 15 | 5.7E-47 | ||
Gene3D | 270 | 493 | 224 | 1.7E-112 | ||
ProSitePatterns | 330 | 346 | 17 | - | ||
PRINTS | 334 | 345 | 12 | 5.7E-47 | ||
PRINTS | 396 | 409 | 14 | 5.7E-47 | ||
ProSitePatterns | 396 | 409 | 14 | - | ||
Gene3D | 494 | 555 | 62 | 3.0E-27 | – | |
SUPERFAMILY | 534 | 659 | 126 | 2.75E-36 | – | |
Gene3D | 557 | 666 | 110 | 1.6E-44 | ||
Pfam | 594 | 659 | 66 | 1.8E-8 | ||
Phobius | 668 | 686 | 19 | - | – | |
Phobius | 687 | 695 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0188900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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