Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0188900 |
| Transcript ID | LotjaGi3g1v0188900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|G7ITZ5|G7ITZ5_MEDTR Aconitate hydratase; Found in the gene: LotjaGi3g1v0188900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27126448..27132377) extracted from Lotus japonicus Gifu genome v1.2.
TTTCATTTGATCTAACACCTGTGATTTTATCGTTGAATGTGAATTCTGTTTTGCTTTTTTGTTTTCTTGGAATGGAATCT TCTGTTTGACTATGAGTGAATGATTAGTACGTTAACTTTTTGCGTTTAACCTTGCTTTCTGTTTTCTGTTGAATATCGTG ATTGTTTGAAGGATCGTGAAGTTTGCCTTATCTGTTGAATCGTCGTTGTTTGAATTTGTAATATGTTGGTGCTGAATTTT TGTGTGTTTCTGAGTGTTGTTTTTGTCATCTAACATATTTGCAATTGCTGCAGCTGGTGAAAATCCTTTCAAAGGAAACT TGACGAGTCTCCCCAAGCCGGGTGGCGGCGAGTTTGGAAAATTCTACAGCCTTCCTTCTCTCAACGACCCACGAATTGGT AATTTGCTGGTTCCATTTTAGTTCAGTGGTTCGGTTTGAATTGGGTTTTCTTTTTGTTGTCTTTATTACTAGAATTTTGG GTGAAATGTGTGTTTTTGTCCCTTTATCATGTGTTTGATAAAGGGATCAGTCTCTCCTTCAGAATTGCACATTCTCCTTG CATTTGCTTAAGTAGGTAAGTTGCTGATGGTATCAACTTTTGTTGGTATATGACAGATAGGTTGCCATATTCTATCAGAA TTCTCCTTGAATCTGCGATTCGTAATTGTGACAATTTCCAAGTTACCAAAGAAGATGTTGAGAAGATTATTGACTGGGAA AGCTCTTTTGTGAAGCAAGTTGAGATTCCTTTCAAGCCCGCTCGTGTACTCCTGCAGGTACTTTATTCAATTCTAGGTGC AGCGAAAGAGTTATTATCATGGATGGGTGATGTTAAGTAGTAATACACATTCCTTCATTTAACACCTATCCTTTTTTTTC CTTCCCTCAGGATTTCACTGGAGTGCCAGCTGTTGTTGACCTGGCTTGCATGCGAGATGCGATGAATAAGCTTGGCAGTG ATTCTAATAAGATTAATCCTCTGGTATACACAATTTCATCACTTGTGATTTTAATTATGTTTTAAAAGTTCTCAGATTCA TAGGAGACAAGCAGGGTTGTACATGGTATTAGATTATGCTTAATATGTTTACAACTTGGTTTGATTTTAAACTTACTTTA AGGTCAAGTATTGTTGGCCGAGTTGATTTTGAAATTATATTTGTGAGAAAGAGAGACAATGTGAAACTCTTACTAATTAG ATTGAAAATAACTGTTATTCTTTTTGAAAAAGTTTGAGATGTTTTTGAACCATTTTGCACTCCAAGATGGATCATATTAA AAATATTCTTTTAAGTTTGAGCAATTACACACTACAAATTTAAACCATATAATTTTTGTGAAATCACAACAACCTATCTC CACAGTACCCAGTCATGGTGTTACCGAGGAGTTAAACAAGCTCTTTTTAAAGCATATTTTGACTGTACTTTAGGCTTGCT ATAGTATAAGTGGCTCTGAGTCTGAACATTGCTTGTTGCCAGGTTCCTGTTGATCTCGTCATTGATCATTCAGTTCAAGT TGATGTGGCGAGGTCAGAGAATGCAGTGCAGGCTAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTCC TAAAATGGGGTTCGACCGCGTTCCAAAACATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTAAGTTCAGAA TCAGACATATAAAAAGATGTCATGGAGTATATTCTTCATTGTTTTTGGTTGTTGATACTGCTTATGATGTCTCGAATTCC AGGTCAATCTTGAATACCTCGGACGTGTTGTATTCAACACTGAGGGCGTACTCTATCCTGACAGTGTGGTTGGCACTGAT TCACATACAACTATGATAGATGGACTTGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCAGAGGCAGCAATGCTTGG CCAGGTATGATTTAAATATAATAAAATGTTGATTATATAAAAGAAGTAATGAGCGGATGGTTTATTCTTTTAAGTTACAT GTTTGTGTACTTTTTCTATTAACTTTGTTGATCCTAATTCTGTGTGCTATGGTAATGACAGCCTATGAGCATGGTGTTAC CCGGTGTTGTTGGATTCAAGTTGTCTGGAAAATTGCGCAATGGTGTTACAGCAACCGACTTGGTTCTAACTGTTACACAA ATACTTAGGAAACATGGTGTTGTAGGGAAATTTGTGGAGTTTTATGGTAGTTAAGTTCTCCTGCATCTCCTTATTTTCAG CTTGTGCTGCCCTGTTCCAAATAATGACCTGTTCGAATGGTTTTTGTTCTATAGGTGATGGTATGCGCCGATTATCATTA GCTGACAGGGCCACTATTGCCAATATGGCTCCTGAATATGGAGCAACCATGGGCTTCTTCCCTGTAGATAATGTGACGCT ACAATACCTCAAGTTAACGGGAAGAAGTGAAGAGACTGTGAGTATCACCTTATTTATTATTTCCCAATGATGTAAAATGC CTATAGGATTAGCTAACCTTCATATTTGGCTGAACATAGGTGGAAATGATAGAAGCCTATCTCAGGGCAAACAAAATGTT TGTGGACTATAATGAGGTAATTCTAGTTGAATGTACATTCCTTTTAACAAAACAAGTACGTACTAATGTTAGAGGTATAT AATGCTAATTTGGTTTCCATAAATTCAGCCTCAACAAGAAAGAGTTTATTCATCCTATCTTGAATTGGACCTTGATGAAG TTGAACCATGTATCTCAGGGCCAAAGAGGTAAGACAGTAAGAGACTTGCTTTACATACTGCCTGGTATTTTAATGTGAGT ATTTAAACTTCTCTTTTAAGTGACAATTCATACTAAATGATACCCTGGCCAGGCCTCATGATCGGGTGCCTTTGAAAGAA ATGAAGACTGATTGGCATGCTTGTCTTGATAGCAAAGTGGGGTTTAAGGTTAGTAATGCTGTGATATTCAAATATTGTTC TATTTTTTGTCTCATGAAAAGATGATTTAATGGTTTATCTATATAGTGTATTAGCTCGCAACCATTTGTTCAAAGCAAAA ATGCAACTGTCTGCCCATTTCGTTGTTTTGTGATAAACTACTGACTGGGTTAAATTTTGTCAATTTTCAATTGTGTGCCT ACAACTACAACGAACATCTGAGATCGACATCACAGAACAAAGTTGAAATTGTAGCCTCAAAACACAAATTGTATTTTACT ATGAAGAAAAGCAAATCAACTTGTTTAACCTTTTTTCAATAATCAAATGGTAACACTGTGTCAAGGGGAAAAATTACCCT TCTGTTTCCTGAATCTGGAATCTAAAAAGTGATTATTTTACTGGAAATCAGTCCTATTTTTGGAAAAAAAATTCTATCTC TATCATCTGTCACTTTCTATGATCACAGTAGCCAGATTTCAGAGAGCATTATAATAATTAGAATGCAATTAACTTCTTTT CTTAATATTAGTCATTCTGATTGTTTCAAGTTGCAGACCTTCAACTTGAAGGCGCAGTTGCAGTCACAAAACATGTAATA ATAGTTATCCTACATGTTTTCTTTCAATACAGGGATTTGCAATACCGAAAGAAGCACAAGGAAAAGTTGCAAAGTTTGAT TTTCATGGGCAGCCAGCAGAGCTCAAACATGGAAGCGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCC AAGCGTTATGCTTGGGGCTGGTCTTGTTGCAAAGAAGGCTCATGAGTTAGGCCTGAAGGTTAGGCGTTGATATAAATATT TTAGAAACTGTCTTTCTGCTCATTTTCAACATGATATCTTTACTATGATACCACATTTCGTGGCAACTGTAAAAAGGGCA TTGTTTTCCTTTTATGTTGTCCTCTTCTAGGTAGTAATTGTTGAAATTCTCACTGTTTGCCAGGTTAAGCCTTGGGTGAA AACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACTAAATATCTGCTTCAGAGGTATTTCACACTTCTTATTATAATATTAT ATTATTCTTGTAATTGGTATTATAATGTAATTTCCCTCTACATTCTGCACAATTTTGGAAAAATATATACCAAGTTAAAA TTTGTTCTTTACTTTCTTTGCAGTGGCCTGCAAAAGTATCTAAGTGAACAGGGTTTCCAAATTGTTGGATTTGGTTGTAC CACGTGCATTGGCAATTCAGGGGATTTGGACAAATCAGTTGCTTCTGCTATCTCAGAAAATGGTAATTGGAATATCCTAA AAAATATTATGTCTATAACTGTAGCTGATTTCTATGCAATTCTTACTTTTTCTTTTAACATTTAGATAACATCTTAATCA TATTCTGCTTTAAATTACCTGTACTAATTAATTCTTATATGGTTTCATGCAGACATTATAGCATCTGCTGTGTTATCTGG GAACCGGAATTTTGAGGGCCGTGTGCATGCTTTGACACGAGCTAACTATCTTGCCTCGCCTCCGCTGGTTGTTGCTTATG CGCTTGCTGGAACGGTATGTATGCTTTCTTAATATTTCTAATATATGTATGAAATGTTTTTGGTCCTTGCTTCTTCCATA TTGTCCTATTTTCATGTCTCTTTTAAGACTAGTTCTAAGATTATTTATGCCAAGGACTTGGTAAAAAACAAGTATTGAAG TTATTGGAGGCTAATTACAAGCATTGATATTTTCTGTTAGTTACTTAATAAGATATCCACCCTCTTTCATTTACATTTGT TCAGCCTCATGCTATATGTAATGTATTAGGACTCAAGCTGAGTGCCCGAGTCCAAATGCATTCTTTATTAGCTTTTTGGT TTTCCTTTTCTCAAATTCTCCTATCAAACACTTCCTTAGACCCGACTATTTAGATACTCACATCCAGAAGTCTGGATCTT GACTTACACTTGGCAATGACTTTGGTAGTTTTTCTGTTTTCTCTGACATTGAGTTTCATGTCACAATAATATTTAGGCAT TTTCTCGTGTTTATAAGCTTTATTTAGAACCTTGTTTTATTGTTGTAGGCATGCTTTATTTGATACTATATTAAGGTTGA TCAAAATTTGGAGTTTATAATATTGATTTCCCTCCAAATGTTGTTAACATTCATCACTCGCCTTTTGGTCAAATTTCCAG GTTGACATTGATTTTGAAAAGGAGCCAATAGGTACAGGGAAAGATGGCAAAAATATCTACTTAAGAGATGTTTGGCCATC CACGGAAGAAATTGCACAGGTGAATGATGTCCACTGTTCTCATTATTTGAAATTTACTCTGAAGATTTGAGTCGTTTGAC ATTGTGTGCAGCAAAATTAACTTTGGTTGTTTGATTCGTAGGCTGTCCAATCGAGTGTGTTGCCTGACATGTTCCAAAGT ACATATGAAGCTATTACCAAGGGTAACGCTATGTGGAATCAACTACAAGTTCCTGCTGAGAAGCTGTACTCATGGGATCC CAACTCAACATATATTCATGAACCTCCGTACTTCAAGAACATGACCATGGATCCTCCTGGCGCTCATGGTGTGAAAGATG CCTATTGCCTGCTAAATTTTGGTGACAGTATAACAACTGATCACATTTCTCCTGCTGGAAGCATTCATAAAGACAGCCCT GCTGCAAAATATCTTCTGCAGCGTGGGGTTGAACAGAAGGACTTCAACTCTTATGGAAGTCGTCGTGGCAATGATGAAAT TATGGCAAGGGGAACCTTTGCTAACATTCGTCTTGTAAACAAGCTCTTGAACGGGGAAGTTGGCCCCAAGACTGTTCATA TTCCCACAGGGGAAAAGCTTTCCGTGTTTGAAGCAGCAGAGGTGAGCTATGCACTACCCAAGAATTACTTGTTTTTTATT ACTGCTTTTGAACTTCTCAAGTGGCTGTCATATTATGCCATATCATCATATTTTGAAATGGTCTTTTCTTAATTGCTTTC TAAAATTTAA
CDS sequence (LotjaGi3g1v0188900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAGATGCGATGAATAAGCTTGGCAGTGATTCTAATAAGATTAATCCTCTGGTTCCTGTTGATCTCGTCATTGATCA TTCAGTTCAAGTTGATGTGGCGAGGTCAGAGAATGCAGTGCAGGCTAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGA GATTTGCTTTCCTAAAATGGGGTTCGACCGCGTTCCAAAACATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAG GTCAATCTTGAATACCTCGGACGTGTTGTATTCAACACTGAGGGCGTACTCTATCCTGACAGTGTGGTTGGCACTGATTC ACATACAACTATGATAGATGGACTTGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCAGAGGCAGCAATGCTTGGCC AGCCTATGAGCATGGTGTTACCCGGTGTTGTTGGATTCAAGTTGTCTGGAAAATTGCGCAATGGTGTTACAGCAACCGAC TTGGTTCTAACTGTTACACAAATACTTAGGAAACATGGTGTTGTAGGGAAATTTGTGGAGTTTTATGGTGATGGTATGCG CCGATTATCATTAGCTGACAGGGCCACTATTGCCAATATGGCTCCTGAATATGGAGCAACCATGGGCTTCTTCCCTGTAG ATAATGTGACGCTACAATACCTCAAGTTAACGGGAAGAAGTGAAGAGACTGTGGAAATGATAGAAGCCTATCTCAGGGCA AACAAAATGTTTGTGGACTATAATGAGCCTCAACAAGAAAGAGTTTATTCATCCTATCTTGAATTGGACCTTGATGAAGT TGAACCATGTATCTCAGGGCCAAAGAGGCCTCATGATCGGGTGCCTTTGAAAGAAATGAAGACTGATTGGCATGCTTGTC TTGATAGCAAAGTGGGGTTTAAGGGATTTGCAATACCGAAAGAAGCACAAGGAAAAGTTGCAAAGTTTGATTTTCATGGG CAGCCAGCAGAGCTCAAACATGGAAGCGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCAAGCGTTAT GCTTGGGGCTGGTCTTGTTGCAAAGAAGGCTCATGAGTTAGGCCTGAAGGTTAAGCCTTGGGTGAAAACAAGTCTTGCTC CAGGCTCTGGAGTTGTTACTAAATATCTGCTTCAGAGTGGCCTGCAAAAGTATCTAAGTGAACAGGGTTTCCAAATTGTT GGATTTGGTTGTACCACGTGCATTGGCAATTCAGGGGATTTGGACAAATCAGTTGCTTCTGCTATCTCAGAAAATGACAT TATAGCATCTGCTGTGTTATCTGGGAACCGGAATTTTGAGGGCCGTGTGCATGCTTTGACACGAGCTAACTATCTTGCCT CGCCTCCGCTGGTTGTTGCTTATGCGCTTGCTGGAACGGTTGACATTGATTTTGAAAAGGAGCCAATAGGTACAGGGAAA GATGGCAAAAATATCTACTTAAGAGATGTTTGGCCATCCACGGAAGAAATTGCACAGGCTGTCCAATCGAGTGTGTTGCC TGACATGTTCCAAAGTACATATGAAGCTATTACCAAGGGTAACGCTATGTGGAATCAACTACAAGTTCCTGCTGAGAAGC TGTACTCATGGGATCCCAACTCAACATATATTCATGAACCTCCGTACTTCAAGAACATGACCATGGATCCTCCTGGCGCT CATGGTGTGAAAGATGCCTATTGCCTGCTAAATTTTGGTGACAGTATAACAACTGATCACATTTCTCCTGCTGGAAGCAT TCATAAAGACAGCCCTGCTGCAAAATATCTTCTGCAGCGTGGGGTTGAACAGAAGGACTTCAACTCTTATGGAAGTCGTC GTGGCAATGATGAAATTATGGCAAGGGGAACCTTTGCTAACATTCGTCTTGTAAACAAGCTCTTGAACGGGGAAGTTGGC CCCAAGACTGTTCATATTCCCACAGGGGAAAAGCTTTCCGTGTTTGAAGCAGCAGAGGTGAGCTATGCACTACCCAAGAA TTACTTGTTTTTTATTACTGCTTTTGAACTTCTCAAGTGGCTGTCATATTATGCCATATCATCATATTTTGAAATGGTCT TTTCTTAA
Protein sequence (LotjaGi3g1v0188900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQ VNLEYLGRVVFNTEGVLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATD LVLTVTQILRKHGVVGKFVEFYGDGMRRLSLADRATIANMAPEYGATMGFFPVDNVTLQYLKLTGRSEETVEMIEAYLRA NKMFVDYNEPQQERVYSSYLELDLDEVEPCISGPKRPHDRVPLKEMKTDWHACLDSKVGFKGFAIPKEAQGKVAKFDFHG QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLKVKPWVKTSLAPGSGVVTKYLLQSGLQKYLSEQGFQIV GFGCTTCIGNSGDLDKSVASAISENDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK DGKNIYLRDVWPSTEEIAQAVQSSVLPDMFQSTYEAITKGNAMWNQLQVPAEKLYSWDPNSTYIHEPPYFKNMTMDPPGA HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLQRGVEQKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG PKTVHIPTGEKLSVFEAAEVSYALPKNYLFFITAFELLKWLSYYAISSYFEMVFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 530 | 530 | 6.41E-210 | ||
| CDD | 1 | 467 | 467 | 0.0 | – | |
| Gene3D | 1 | 269 | 269 | 1.4E-139 | – | |
| TIGRFAM | 1 | 658 | 658 | 0.0 | ||
| PANTHER | 1 | 658 | 658 | 0.0 | ||
| PANTHER | 1 | 658 | 658 | 0.0 | – | |
| Phobius | 1 | 667 | 667 | - | – | |
| Pfam | 1 | 465 | 465 | 3.2E-171 | ||
| PRINTS | 44 | 57 | 14 | 5.7E-47 | ||
| PRINTS | 68 | 76 | 9 | 5.7E-47 | ||
| PRINTS | 97 | 110 | 14 | 5.7E-47 | ||
| PRINTS | 111 | 126 | 16 | 5.7E-47 | ||
| PRINTS | 173 | 186 | 14 | 5.7E-47 | ||
| PRINTS | 187 | 200 | 14 | 5.7E-47 | ||
| PRINTS | 269 | 283 | 15 | 5.7E-47 | ||
| Gene3D | 270 | 493 | 224 | 1.7E-112 | ||
| ProSitePatterns | 330 | 346 | 17 | - | ||
| PRINTS | 334 | 345 | 12 | 5.7E-47 | ||
| PRINTS | 396 | 409 | 14 | 5.7E-47 | ||
| ProSitePatterns | 396 | 409 | 14 | - | ||
| Gene3D | 494 | 555 | 62 | 3.0E-27 | – | |
| SUPERFAMILY | 534 | 659 | 126 | 2.75E-36 | – | |
| Gene3D | 557 | 666 | 110 | 1.6E-44 | ||
| Pfam | 594 | 659 | 66 | 1.8E-8 | ||
| Phobius | 668 | 686 | 19 | - | – | |
| Phobius | 687 | 695 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0188900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…