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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0323300 |
| Transcript ID | LotjaGi3g1v0323300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome subunit alpha type; TAIR: AT5G35590.1 proteasome alpha subunit A1; Swiss-Prot: sp|O48551|PSA6_SOYBN Proteasome subunit alpha type-6; TrEMBL-Plants: tr|I3T518|I3T518_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0323300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68841519..68847795) extracted from Lotus japonicus Gifu genome v1.2.
CATTCTGTCAGTCTCGGGGCCCCGCCCAGCCCGTTTTGACGGTGCTTCACTTTTGTTTTTTCCTTGTTTTCTTGAGCAGG AAGAGAGGTCGACGCTTTTAACAACAAAAACACCATCTTCACTCCAGTCTCCTCCCCTCATTCGCTACCGTTTCAAATCG GAAAAAAAAACCCTCCACCCATCACCGCCGTCAACCACCGTGAAACTCACTCCCACAAAACCCCTTCCGCCACCCCCTAA TCGGAAAACATGAGTCGAGGAAGTGGAGGCGGCTACGATCGCCACATCACCATCTTCTCCCCTGAAGGCCGTCTCTTCCA AGTTGGTACGTAACCCTCAGATTTCTGGTTTTTCCTTAACCCCTCGCAACGGCGACGTTTTAATCGCCCTAATTTGCTTC AGATCTTTCACTTCTTGACCTACCCATTCACCAAGGTTTCTTAATTTTTGTTCCCAAATTCACTATTTTTTCCTTTTTTT AAAAAATAAATGTTGCTATGCAAATTACACAACTTAACTGGGTAATTGTAGTGCCATTTTTTTTTCAATTTTGATGATTT AAAGTGAAATTTCTGTGTACTGGACTAGTGAGCTAGGTTGCATGAATCTAAATAGGTTGTGTTACTTCTTTATGTTATCC CAAATTGAAAAAATATAAAACTATGTAATGAGCCTTTAGTTTTGATTTTTTTGAGTGAGTTGATTAGTTGTTTAGGTTTT AGTGTTCTGAGTTGTGGAGTTTTGAATGTGTTGAGCAGAGTATGCTTTCAAGGCTGTTAAGGCGGCCGGGATAACGTCAA TTGGTGTCCGTGGAAAGGATTCGATTTGTGTTGTTACTCAGAAGAAGGTTCCGGTGAGTTCACGAAGTTGGTTATTGAAT CTTCTATTTTTCTTGTTTTGTGTGTTTGTGCTGGCTGCTTAAGATAGGAAGTTCTATGCAGGACAAGCTGCTGGATCAGA CAAGTGTTTCACATCTCTTTCCCATTACAAAGTATCTTGGTTTATTGGCAACTGGCATGACAGGTATGTTTTTCATTATT TAATTTGTTTTAGGTATTTTTGATATTTATCTGCATGCTTTTTCACTTAAAAACAAATATGTTTTTAGGGAAAGTTGATT TAGGAGGCATTTCGTAGACAATGTTCTTCATTATATCGTATCTTATAGTAAAATATAAAGTACAATTTTTGAATCTGATA TCAACCTAGCAACTTGTTAGTGAGGGGAAAGTAAGAAGGCAATGGTGATTTTTGTGAGAGTGCTTATCATTCCTCTTGAT AGTGACGTGTTGTTGGCACTTGGCAACCAATTCAAACCTCTGTCGTACAGTTTCACCTCTTTAATTTTATTTGGGATGCT GGTTATTAATTTCATGTTCCTCTGTATAGAGTATCATTAGTAATCTGTAATGCGAAAATAGATCTATTAGAGCTGAATGC TACTGTCAACATTGTGTCTAAGGATAACTTGACCCATGCTTACAGGTTCACATCACAGACAATGATAATATTGTTTTTCT ATTACAATTGAAATCTGATGTATGATAAAATGTTTAGGTTTTAGCAGGAGAAAAAGAATAGTTTCTTTAAATTACAGACA TATTTTGAATTAAAATGTCTTTACATCACAAGTTCACTTTTGCTTTATCTCGTTGGAACATTTTTTTTTCAGCTGATGCT AGGACACTGGTTCAACAAGCAAGAAATGAAGCAGCTGAATTTCGGCACACATATGGATATGAGATGCCTGTGGACGTATT AGCTAAATGGTTAGTGATTAAGTTTTTTTTGTAGTGTCCACTATAACCATTACTAGCTGCTTATTTCTCTCTTTCATATC TGCATTTCAAATTGTCATTATTTTGTTGTCAAGAATGTTATCTTTGCTTCTTTTCTTAATGTCCTAGAACAATGCATGGA CGATCTTTCCTCTTCTCTTCAGTTTGTTGTCTCAATAGCCACAATGTCATAACATGTGCACCTGCTACTGGATTTGCAAA TGGGAGATTATATTCTTTATTGCTGCCATCCTGTTTGGAAATGGCAATTGCACACTTATGAGACTGTAATAAGCATCTGA TGCATAAAACAATGCAGGAATCATTATCACTTCTCCTTCCAAATAGCTGCTATTAACAGATCCAAGTTTAGGAATCATTG TGGCCATGAATATTTAGCAAGCCATTAGAGCTTGCAACTATTTCTTACTCTTATGCTGTTGTTCTAACTTCTAATAGGGA GCCTGATGATGAATGGCAAAATCATTTCAATATTAGACATAATTTAGTTTTAGGGTTTTATAGATGATTTTAATTTGTTG GGCATGATGAGCGAGTTCGTTAATTGCTGTCTTTCACTTTTCCAAGCAGGTTATATAAAGCCCATACTCTGGTAGTTATG TTAATAGTGGTGAAGTCAAGTGACTTATTTTTCTTTTGTATCTCCCATTCTCTCTTTCTGGGGCTCTGTGCCAGCTTCAT GGTTGTTTTTTCCACTGTTTGTTAGATACTCATAGGTTAGACCACACGGGGGAAATAAGGAAGTGATAAGAATGGAATTG TGGGTTGGAGAAGTTTGTTTAAGAGGGAAAGGGAGGGGACTAACAAAATAGACAGGTGGCAGCAAGTCAGTAAGACATTG GAGAAGGGGGTGTTTGAAGCATGAAGAGGGAGGGGATTATTCTGGCACTTTTTGATACACAAGAGAACATATTTAATTGC TGAACACAAGAGAACATAGTTAATTGCAGAATTAGCTTTTGTCAATGTTTGCTACAAATGTAAGGTTTCAAGAACCCCCA CCCCGCAAAAAAAAAACAGGTGAAGTTAGGAATCAGTACATATTGCGTACAACAGAGCTTTATGATGTGCTTCTAGTCAC TTCACTATTTACAAAGCCTTTTTCACACCTGTGCTCTTAGATTACTATAACCTGATTAAAGTAATTCGTCTGTTGAAGCG ACTGTAATTTTGACTTTTGTCAAAGGCTACATAATATATGACTTCATACATTTTAGGTTTTTACAATTTGACAATAACAA CTTTTTTTTATCTGACTTGTGATTTTTATGCTAACAGGATTGCTGATAAATCACAAGTCTATACTCAGCATGCTTATATG AGACCTCTTGGAGTAGGTATATTTTTTCTTAGCCTTTTCTCTACTGGACAACCTTCACCTCGTGTGGAAAATCACATAAT TAGTTTTGTATGGTCATAATAATTTTATATTTCTAGTACTTAGTGTTATTATTAATGTCATTTCCTCTTTCTATGATTTT GAATCTGTTGTGAAGTTGCTATGGTTTTGGGTATTGATGACGAAAATGGGGCTCAGCTTTACAAATGCGATCCTGCTGGC CATTACTTTGGTCACAAGGTACATAGAAGTTCATCTATCACTCTAAAGTCTAAATATTGTTTGATCCTTTTAGTGTTATT ATAGACAGATAGACAAAAAATTAAGTGTCTGAGAATCTATAATGATGTACTCAGGCCACAAGTGCTGGATTGAAGGACCA AGAGGCAATTAATTTCTTGGAAAAGAAGATGAAGAATGACCCTTCATTTACCTATGAGGAGACAGTTCAGGTAGCATTTG TGTTTTCTCCCCCTAACTCCCATTTCACTAGCCAAATTTTTCATTGGAGATGAAGTTCTATAAAATTGATCATGTACTAG TTGTGGGGTTCCATCTGTCTAGCTTGACAAATTGACAGTCTCTAAGTTCAGTAAGTTGGTATAAAAAGTGTAGACCACTG ACTTGTGACTACCTTCTTATCACTGAGGACATGTGCGCGTTTAAGGATATTTTTCAACATTTTGGATTTTTGTCATTCTT TTGAGGATAAACAATAATATTCTATCCCTATTTTCCTCCTTTTCTGGCGACTCTTAAATTTTTCGTAATGAATGTTTACT ATGCTTTTATATTCTATCATTGGTCTGCATGAAAGTTATTGGATAAAATATGTTATGTATGTAGATGCTGAAGATTGGCT GTGTTTTACCAAAAGGTGAAAAGTCTGAAAAATGTGTGGAATTTGATGTGAATGATCTCAGTGTTGGATCTTTTTCTGAC TGGATGAATAATGATTGATATGTTTTGTATTTCTAAATGTTCCTCAAGGAGGTCACAAACTTATATCTATGTCAATCGGA TAATGTAGGAAAAACTAAACCTGTGATTCTGTGAATCCTCATTAAATTGTAACATTAATTGTGATATGATATTAATACTA TCATTAGGTTTAGTTAACATTGTATATCGGCCTTAGCTTAAACCTTCAATTGTGTATTATGGGATTTGTTGCGTAGACTT TTATTCTTGCGACTGACAGTTTCTTTATTGTGTTATCTTATGAATAGTTACTGGTTTTTTTATTAAAAGAAGCTATAGTG TAATTGAATACACCTGAACCTTGTTTCAAATAGTTGTTGTTTATCAATTTTGTTGAAGAATTATCTGATGCTTTTAAGGT TCTAAATATATGATCTCCCTGCTTTGTTTTCAGACTGCCATTTCTGCCTTACAATCAGTTCTTCAGGAGGATTTTAAGGC CACTGAGATTGAGGTAAAACTTCATTTTTACAGCTCAAGACATCCTCATCCCGTCAATTGAAGTTAGTGCAATTTTTTCA AAAAAAAAAATTCTTTGAAGGATTTTGTTCGTATAGTCCCTGATGAGCTAAAACATGTTGTCTCTAATTTTTAACATTAT TTGCAAGTTACTTGCTCTTTATCATTAAACGATTCTGATGCATTTTTTGTCATGCTGTCTGGTGTTTTCCTTTACAAACT CTCTCGACAACTCCTCATTACATGACTTTCTAGCTTTTGTTTTAATGTCAGGCAACTCAGGCCAGAGCATTTCTCTTTCA TTATTCTTAGATGACAAATAGATCATATCATAATAGTCTATAATCTATGTTCCTGTCATGTTCAAGTGATTGTTTTGTGC ATGGTTTTGGAAGATGGTTAATAACTATAACAGATGTTGCTTTTTAGATAAATGAATTGTAATGTTTAGTTGCTCCAGAA TTGGGTTATTTCACAGTTTTGAAACTAAATGCTTTCTGTGGCATAAATCAGCATGTTATAACATTTTTGTTCTTGACTTA CATGCTATGGATGTTGAAAATTCTATGATAATTAACAAATACTACTTCCCTGGTTTGATTTAAATGATTGTATTTTGTGC TTTCTAGGTTGGAGTGGTGCGGAAGGATAATCCAGAATTCAGAGTTCTATCCACCGATGAGATTGATGAGCACTTGACTG CAATAAGCGAGCGTGATTGAGTTCCTCATAAAAAAGGATGACTGTCTAAACTTTAAGATGTTAGATTAAATCTTCAACTT GTTTTATGTGATCTTGGAATTGATTTCCATTTGATATTTGAGTATTAGTTGTCCACTATCGTTGAAGATTGATTGAATTC GCTTTTCTATTAAAAAAAAATTAAAAGTTGGAGCCTGCCCATGAATATGTTGATCCTGTAGACAGTGTACAACACTAGTG GGAAGAAACGGAGTGCTATTGTTGAACACGAGCGAGATTGGTCCTTTCTTGTCTATAGCTTTCTCTGTTCCTACAGCTTA TACTGAGCAAACATCATTAAATTTCGAGGAGAAAGTTTATTGGGAGCGGATTTCAAGTTCTATCAAATCTCTCAATTACT TGATTGCGCTAAATTTAGTTTGTATTATATTTGCCACCATCATTCAATTCCTATAAATGATATCAATATGACTCTCAATG CTCATTTTAAATTTAGGTCTATAAGGTACCAGGTTGTCAATAGCATGTGATTGCACCGGCATGACTCGTGAAAATAACCA GTAGAAAAAAAAAATCTGTTACGCCATAACACTTTTTTATTTGATTCAATACGGGGCTTACACCCAAAACTAAGGAAGCT CACCCCTAACATAGAGGGTGTTAAACTGTTACAGGAATCAAATAACAAAGGAATAGAACTAGACACAGGAACAAAATTAT AGACCTTGCTAGGTTTCAACAATCCTATGACATTCTTAGTAAAAGTGTCATCAACCGAGTTAGCTTCTCTAAACACATTA GGTGGACTTGCTCAAAGCAATTAATGTCCTTAAGGTTATAGACCTTGCTAGGTTTCAACAATCCTATGACATTCTTAGTA AAAGTGTCATCAACCGAGTTAGCTTCTCTAAACACATTAGGTGGACTTGCTCAAAGCAATTAATGTCCTTAAGGCTGCTG CGGGCTTTGAAGGAAGGCAGCCTTGATTGATTAGATT
CDS sequence (LotjaGi3g1v0323300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCGAGGAAGTGGAGGCGGCTACGATCGCCACATCACCATCTTCTCCCCTGAAGGCCGTCTCTTCCAAGTTGAGTA TGCTTTCAAGGCTGTTAAGGCGGCCGGGATAACGTCAATTGGTGTCCGTGGAAAGGATTCGATTTGTGTTGTTACTCAGA AGAAGGTTCCGGACAAGCTGCTGGATCAGACAAGTGTTTCACATCTCTTTCCCATTACAAAGTATCTTGGTTTATTGGCA ACTGGCATGACAGCTGATGCTAGGACACTGGTTCAACAAGCAAGAAATGAAGCAGCTGAATTTCGGCACACATATGGATA TGAGATGCCTGTGGACGTATTAGCTAAATGGATTGCTGATAAATCACAAGTCTATACTCAGCATGCTTATATGAGACCTC TTGGAGTAGTTGCTATGGTTTTGGGTATTGATGACGAAAATGGGGCTCAGCTTTACAAATGCGATCCTGCTGGCCATTAC TTTGGTCACAAGGCCACAAGTGCTGGATTGAAGGACCAAGAGGCAATTAATTTCTTGGAAAAGAAGATGAAGAATGACCC TTCATTTACCTATGAGGAGACAGTTCAGACTGCCATTTCTGCCTTACAATCAGTTCTTCAGGAGGATTTTAAGGCCACTG AGATTGAGGTTGGAGTGGTGCGGAAGGATAATCCAGAATTCAGAGTTCTATCCACCGATGAGATTGATGAGCACTTGACT GCAATAAGCGAGCGTGATTGA
Protein sequence (LotjaGi3g1v0323300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVSHLFPITKYLGLLA TGMTADARTLVQQARNEAAEFRHTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGAQLYKCDPAGHY FGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLSTDEIDEHLT AISERD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 246 | 246 | 3.2E-92 | ||
| PANTHER | 5 | 246 | 242 | 8.0E-156 | – | |
| PANTHER | 5 | 246 | 242 | 8.0E-156 | – | |
| SUPERFAMILY | 8 | 245 | 238 | 8.14E-81 | ||
| CDD | 8 | 220 | 213 | 4.10211E-148 | ||
| Pfam | 9 | 31 | 23 | 2.6E-15 | ||
| SMART | 9 | 31 | 23 | 1.1E-11 | ||
| ProSitePatterns | 9 | 31 | 23 | - | ||
| ProSiteProfiles | 24 | 239 | 216 | 81.696 | ||
| Pfam | 35 | 220 | 186 | 1.7E-53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
| Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
| Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Cellular component | Proteasome core complex, alpha-subunit complex | The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus. | ||
| Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi3g1v0323300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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