Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0345100 |
| Transcript ID | LotjaGi3g1v0345100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal protein L7; TAIR: AT3G13580.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4; TrEMBL-Plants: tr|I3T3P4|I3T3P4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0345100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72278899..72281370) extracted from Lotus japonicus Gifu genome v1.2.
TTTGCATCGACGGTCAGAATCAATCTTTAAAGCAAGGCATTAATCATAGCCGTCAAATGTCACTAGTCTGAGAGCACACA AGCACTACAAAACCCTAGCCATCTCATTTCGACGTTGTTGACAAGCCCCGCCGAGAAACCCTAGGTTGCAGTTGCAGTTG CAGAGAGCCTCCACTGTATCGGTAAGTTCACCTACGCGTTTCATTCATCGTTCGCGTTTTGCTTGACCCGCTTTCTAGAT CTACGATTCGATCGATTCTTCATTGGTTTCTCGATTTCATTTTTTGTTGCTTAGTTTGATTGAATATTTTGATTTTAGAT CATTGTTCAATGCTAGATGTTTCAGTGTGAATCATGGTTGATTTGTTTATCTACTGTGATTGGATTTTATTTTTGACAGA GATGGGTGAAGAGGTGAAGGCATTTGTTCCGGAGTCTGTGTTGAAGAAGAGAAAGAGGGAGGAGGAATGGGCTTTGGCGA AGAAGCAGGAGGTTGAAGCTGCTAAGAAGAAGAGAGCTGAGAGCCGCAAGCTGATCTACAGCAGGGCTAAGCAGTACGCC AAGGAGTACGATGAGCAGGTACCTGTTATTAGTTTGTTTCATTCTGTATTGTTGTTTATCCCAATTTATAGTAGTGCGAT TATTTAGTATATTCACGATCCTGCCTTATATTGTATAGGAGAAGGAGTTGATTCGATTGAAGCGTGAGGCTAAGTTGAAA GGTGGATTTTATGTTGATCCTGAGGCTAAGCTCTTGTTTATCATTCGTATCCGTGGGTATGTGTTTTCTGTTTATTTGCT TGTAATTTCTTTATTGATTTATTATATTGTGGTGTTTTAATTCACATATTGACTGTGATTTTTCAGTATCAACGCCATGC ATCCTAAGACTAGGAAGATCCTGCAGCTATTGAGATTGAGACAGGTAGAGTTTACAATTCTCACTGAATTTTGATATTGC CTCATTTAAGCTGTGAAAAGTAATTTAAGGGTTGGAAGAAGCTCGTGTTTGGTAATATGCTTGTAACTTATTGTTTGTAC TCTGTTAGCATGTAAATAAGAATTAACAAACAATGATGTGCTGATTTTTTTTAAGTATTGAAGTGATTTGGTAATTGATG ATTGTAATCTTTTTGTACAACAGATTTTCAATGGTGTATTCCTTAAGGTTAACAAAGCAACAGTCAACATGTTGCACAGA GTTGAGCCTTATGTTACTTTTGGGTATGCTAACTTCATTTTTATATCCTTTAAATTCGGTTTATTTTTTCAATCACTTAA GACACTTTTGCTTTGGTTCTAGATACCCTAATCTGAAGAGTGTAAGGGAACTTATCTACAAGAGAGGTTATGGCAAGTTA AACAAGCAGAGAACTGCTCTTACTGACAACTCCATTGTTGAGCAGGTGCAACAATCTCCCTTTTCTAAATATATGTATTA CTTTTTGAATTCATTCATGACATGCTGCTGACGTTGCATGGATGACAATGTAGGCCCTGGGTAAGTTTGGAATCATCTCT GTTGAAGACCTTATCCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCAAACAACTTCCTCTGGCCATTTAAGCT CAAGGCTCCTTTGGGTGGCTTGAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAACAGGGAGAACTACA TCAATGAGCTAATCAGGCGCATGAATTAAGCTGTGTCAGTGTCCAATTATTAATTAGGGCAATCAGTCTTTCTTTGGCTT TAGAACAAGATCAGACATACATTTTCGTATCTGAAATTTTGGAAATAGCACATTTCTGGCTCTCATAAATCATTTTGCTA AGGTTGAATTTGTTTTTCATATATTTAAGTTTGAGTGATGAGTTTCATGTTGATTTTTCTATTTATGAATATGCTTGGTT TATAATGCTTAGCTTTCTATTTGCTATTCATACTATGCCTGTTCTAGAATGTTTTACTTTAAATCTCAATATAATGCTTA GCTTTCTATTTGCTATTCATACTATGCCTGTTCTAGAATGTTTTACTTTAAATCTCAATTTGCCTGATTTCAATTTTCAA ATTTGCTTCTTTTCAATTCCTTTTTTCAGTAAATTGTTTGCATGTTCGATAAGTAATTATTGCTAAATTCAGTATCAACT GGAAATTTTGTTGTTAAATCTACTTGATTGAGTTTAGAGATTCACAGATAAGCTTTTTATAACTGTTACTTATTTGTCAA ATTATATTGAAAGTTGTTATTTTTAACTACCCAATCAAAATGAAATCCATTCTTTGGGGTCTTTTTTAGTATTTGGTACA ATGCTCAAGTCATGTCTTGTTGATCTGTAATTTAAGCTGGTTTCTTTGCTCTGAATGGACTGGTTGAATTATGGGTCGTC TTGGCTTGTTGTAAACCAGTGTTTACTTGCTCTCTGGAGCACTGCTTGTCTACGCCCGCTAATGGGTCCTCG
CDS sequence (LotjaGi3g1v0345100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAAGAGGTGAAGGCATTTGTTCCGGAGTCTGTGTTGAAGAAGAGAAAGAGGGAGGAGGAATGGGCTTTGGCGAA GAAGCAGGAGGTTGAAGCTGCTAAGAAGAAGAGAGCTGAGAGCCGCAAGCTGATCTACAGCAGGGCTAAGCAGTACGCCA AGGAGTACGATGAGCAGGAGAAGGAGTTGATTCGATTGAAGCGTGAGGCTAAGTTGAAAGGTGGATTTTATGTTGATCCT GAGGCTAAGCTCTTGTTTATCATTCGTATCCGTGGTATCAACGCCATGCATCCTAAGACTAGGAAGATCCTGCAGCTATT GAGATTGAGACAGATTTTCAATGGTGTATTCCTTAAGGTTAACAAAGCAACAGTCAACATGTTGCACAGAGTTGAGCCTT ATGTTACTTTTGGATACCCTAATCTGAAGAGTGTAAGGGAACTTATCTACAAGAGAGGTTATGGCAAGTTAAACAAGCAG AGAACTGCTCTTACTGACAACTCCATTGTTGAGCAGGCCCTGGGTAAGTTTGGAATCATCTCTGTTGAAGACCTTATCCA TGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCAAACAACTTCCTCTGGCCATTTAAGCTCAAGGCTCCTTTGGGTG GCTTGAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAACAGGGAGAACTACATCAATGAGCTAATCAGG CGCATGAATTAA
Protein sequence (LotjaGi3g1v0345100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEEVKAFVPESVLKKRKREEEWALAKKQEVEAAKKKRAESRKLIYSRAKQYAKEYDEQEKELIRLKREAKLKGGFYVDP EAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVRELIYKRGYGKLNKQ RTALTDNSIVEQALGKFGIISVEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIR RMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 243 | 243 | 8.8E-158 | ||
| PANTHER | 1 | 243 | 243 | 8.8E-158 | – | |
| Pfam | 9 | 80 | 72 | 1.0E-24 | ||
| TIGRFAM | 10 | 243 | 234 | 1.6E-100 | ||
| Coils | 49 | 73 | 25 | - | – | |
| CDD | 84 | 243 | 160 | 2.83967E-89 | ||
| SUPERFAMILY | 84 | 243 | 160 | 3.03E-59 | ||
| Pfam | 85 | 135 | 51 | 1.1E-20 | ||
| Gene3D | 87 | 231 | 145 | 1.1E-27 | ||
| ProSitePatterns | 103 | 135 | 33 | - | ||
| Gene3D | 141 | 203 | 63 | 1.1E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Cytosolic large ribosomal subunit | The large subunit of a ribosome located in the cytosol. |
Expression pattern of LotjaGi3g1v0345100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…