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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016082
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.305s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0263999.1
n.a. CM0545.370.nc [Lotus japonicus] gi|164605530|dbj|BAF98596.1| chr0 136868971 136871038 +
4 domain predictions
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Lj2g3v2904930.1
n.a. CM0545.370.nc [Lotus japonicus] gi|164605530|dbj|BAF98596.1| chr2 37968495 37970028 -
4 domain predictions
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Lj3g3v2055450.1
n.a. PREDICTED: 60S ribosomal protein L7-4-like [Glycine max] gi|356526310|ref|XP_003531761.1| chr3 26426443 26428101 +
4 domain predictions
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Lj4g3v2139560.1
n.a. PREDICTED: 60S ribosomal protein L7-1-like [Cicer arietinum] gi|502174832|ref|XP_004515609.1| chr4 29450712 29454437 +
4 domain predictions
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Lj4g3v3099560.1
n.a. PREDICTED: 60S ribosomal protein L7-1-like [Cicer arietinum] gi|502174832|ref|XP_004515609.1| chr4 41321364 41324109 -
4 domain predictions
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Lj6g3v1319710.1
n.a. PREDICTED: 60S ribosomal protein L7-4-like [Cicer arietinum] gi|502085817|ref|XP_004488017.1| chr6 15755752 15758050 +
4 domain predictions
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LotjaGi1g1v0061900.1
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0061900 LjG1.1_chr1 8628522 8642292 +
2 domain predictions
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LotjaGi1g1v0061900.2
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0061900 LjG1.1_chr1 8629205 8629921 +
2 domain predictions
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LotjaGi1g1v0061900.3
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0061900 LjG1.1_chr1 8629503 8629921 +
2 domain predictions
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LotjaGi1g1v0065300.1
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300 LjG1.1_chr1 9018234 9023727 +
2 domain predictions
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LotjaGi1g1v0065300.2
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300 LjG1.1_chr1 9018970 9019686 +
2 domain predictions
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LotjaGi1g1v0065300.3
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300 LjG1.1_chr1 9019268 9019686 +
2 domain predictions
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LotjaGi1g1v0065500.1
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 LjG1.1_chr1 9050538 9056133 +
2 domain predictions
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LotjaGi1g1v0065500.2
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 LjG1.1_chr1 9050588 9071786 +
2 domain predictions
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LotjaGi1g1v0065500.3
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 LjG1.1_chr1 9050636 9052598 +
2 domain predictions
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LotjaGi1g1v0065500.4
n.a. 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 LjG1.1_chr1 9067928 9073455 +
2 domain predictions
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LotjaGi2g1v0001100_LC.1
n.a. 50S ribosomal L30-like protein; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|Q47J85|RL30_DECAR 50S ribosomal protein L30; TrEMBL-Plants: tr|I3S406|I3S406_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0001100_LC LjG1.1_chr2 915667 918300 +
2 domain predictions
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LotjaGi3g1v0345100.1
n.a. 60S ribosomal protein L7; TAIR: AT3G13580.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4; TrEMBL-Plants: tr|I3T3P4|I3T3P4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0345100 LjG1.1_chr3 72278899 72281370 +
2 domain predictions
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LotjaGi3g1v0345100.2
n.a. 60S ribosomal protein L7; TAIR: AT3G13580.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4; TrEMBL-Plants: tr|I3T3P4|I3T3P4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0345100 LjG1.1_chr3 72279291 72279852 +
2 domain predictions
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LotjaGi3g1v0345100.3
n.a. 60S ribosomal protein L7; TAIR: AT3G13580.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4; TrEMBL-Plants: tr|I3T3P4|I3T3P4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0345100 LjG1.1_chr3 72279291 72280607 +
2 domain predictions
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LotjaGi4g1v0306800_LC.1
n.a. 60S ribosomal protein L7; TAIR: AT2G01250.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|P60040|RL72_ARATH 60S ribosomal protein L7-2; TrEMBL-Plants: tr|I3STJ3|I3STJ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0306800_LC LjG1.1_chr4 68236922 68240731 +
2 domain predictions
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LotjaGi4g1v0306800_LC.3
n.a. 60S ribosomal protein L7; TAIR: AT2G01250.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|P60040|RL72_ARATH 60S ribosomal protein L7-2; TrEMBL-Plants: tr|I3STJ3|I3STJ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0306800_LC LjG1.1_chr4 68236922 68240731 +
2 domain predictions
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LotjaGi4g1v0454000.1
n.a. 60S ribosomal protein L7; TAIR: AT1G80750.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|Q9SAI5|RL71_ARATH 60S ribosomal protein L7-1; TrEMBL-Plants: tr|I3S755|I3S755_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0454000 LjG1.1_chr4 82591301 82594890 -
2 domain predictions
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LotjaGi6g1v0234100.1
n.a. 60S ribosomal protein L7; TAIR: AT2G01250.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|P60040|RL72_ARATH 60S ribosomal protein L7-2; TrEMBL-Plants: tr|I3S9R2|I3S9R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0234100 LjG1.1_chr6 54380534 54388713 +
2 domain predictions
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LotjaGi6g1v0234100.2
n.a. 60S ribosomal protein L7; TAIR: AT2G01250.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|P60040|RL72_ARATH 60S ribosomal protein L7-2; TrEMBL-Plants: tr|I3S9R2|I3S9R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0234100 LjG1.1_chr6 54380793 54382867 +
2 domain predictions
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