Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR036919 is a Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily.
<p>Ribosomal protein uL30 is one of the proteins from the large ribosomal subunit. uL30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [[cite:PUB00004400]], groups bacteria and archaea uL30, yeast mitochondrial L33, and Drosophila melanogaster, Dictyostelium discoideum (Slime mold), fungal and mammalian L7 ribosomal proteins which are now referred to as ul30m. uL30 from bacteria are small proteins of about 60 residues, those from archaea are proteins of about 150 residues, and eukaryotic L7 are proteins of about 250 to 270 residues.</p> <p>This entry represents a domain superfamily with a ferredoxin-like fold, with a core structure consisting of core: β-α-β-α-β. This domain is found in prokaryotic ribosomal protein uL30 (short-chain member of the family), as well as in archaeal uL30 (L30a) (long-chain member of the family), the later containing an additional C-terminal (sub)domain).It is also found in nucleolar proteins with similarity to large ribosomal subunit L7 proteins. These are constituents of 66S pre-ribosomal particles and play an essential role in processing of precursors to the large ribosomal subunit RNAs [[cite:PUB00059243], [cite:PUB00059244], [cite:PUB00059245]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0061900 | 11 | ||
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0061900 | 11 | ||
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0061900 | 11 | ||
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300 | 11 | ||
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300 | 11 | ||
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300 | 11 | ||
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 | 11 | ||
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 | 10 | ||
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 | 11 | ||
– | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 | 10 | ||
– | 50S ribosomal L30-like protein; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|Q47J85|RL30_DECAR 50S ribosomal protein L30; TrEMBL-Plants: tr|I3S406|I3S406_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0001100_LC | 10 | ||
– | 60S ribosomal protein L7; TAIR: AT3G13580.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4; TrEMBL-Plants: tr|I3T3P4|I3T3P4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0345100 | 19 | ||
– | 60S ribosomal protein L7; TAIR: AT3G13580.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4; TrEMBL-Plants: tr|I3T3P4|I3T3P4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0345100 | 10 | ||
– | 60S ribosomal protein L7; TAIR: AT3G13580.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4; TrEMBL-Plants: tr|I3T3P4|I3T3P4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0345100 | 19 | ||
– | 60S ribosomal protein L7; TAIR: AT2G01250.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|P60040|RL72_ARATH 60S ribosomal protein L7-2; TrEMBL-Plants: tr|I3STJ3|I3STJ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0306800_LC | 13 | ||
– | 60S ribosomal protein L7; TAIR: AT2G01250.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|P60040|RL72_ARATH 60S ribosomal protein L7-2; TrEMBL-Plants: tr|I3STJ3|I3STJ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0306800_LC | 12 | ||
– | 60S ribosomal protein L7; TAIR: AT1G80750.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|Q9SAI5|RL71_ARATH 60S ribosomal protein L7-1; TrEMBL-Plants: tr|I3S755|I3S755_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0454000 | 17 | ||
– | 60S ribosomal protein L7; TAIR: AT2G01250.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|P60040|RL72_ARATH 60S ribosomal protein L7-2; TrEMBL-Plants: tr|I3S9R2|I3S9R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0234100 | 19 | ||
– | 60S ribosomal protein L7; TAIR: AT2G01250.1 Ribosomal protein L30/L7 family protein; Swiss-Prot: sp|P60040|RL72_ARATH 60S ribosomal protein L7-2; TrEMBL-Plants: tr|I3S9R2|I3S9R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0234100 | 19 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd01657 | CDD | 1 | 5.26 |