Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0381000 |
| Transcript ID | LotjaGi3g1v0381000.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|A0A067KA17|A0A067KA17_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0381000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77358662..77363982) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGTTTGCTGAACCTATTCTACACTTTTTTCTTTTATATGCTTATGCTCAAGTGCAAAGTTGAATTGATATTGTCCAC GATCTTGGCTGATGCCTTCTTGTTCCAAATGCTTTATTTTATGGAGTGATGTTGATGAAATCATGAGTTTATGATAGTTT GGAAATTTTCACAATGTAAAATTTAATTCTCTTACTGCTAGATGAAACTATTTTTTAGTAAATATTTTAAGTGGTTCTGC TCTTCAAAAAGAAAGAATGTGTTCTCATGTTATCCTCAATTGTTTTTTGTTTTCCTCTATTAGTTCACAAGATTGGAAGG CAAGACTGAAGATTCCACCCGCTGATACACGATATAAGACCGAGGTATGGTTATGAATACTCTTATGCCTCAAGCTACGG GTTATATGCATTTTATTCTAATCATATAGTTTGGTTTAGACCCTTGGGGAAATACGATGCTTCAAGCTGCTGGTTATATG CATTTTATTCTAATCATTTAGTTTGGTTTAGATCCTTGGGGCAGTACACCTTATTTATGATATTTGTAATTACTTACTAT TTTATTTTTGTTTATCTTTATCAGTATGGAGTTATTTCATACACTTAAGGGCAAACTTGGTTGCTAGATCCAGGGAGGGG CCCGATCCACTTTGGGGATCTAATGTAGGCAGCTTTACCTTGCATTTTTGCAAGAGGCTGATTCTATGGCTTGAACATGT GCCCGCAAAGTCACATGGCAACAACCTTACCGTTGTGCTGAGGCTCGCCCTCTAGTTATTTCATACACTAATATATCATA AATGTTTTTGTGAAGATCATTCGTGCTATTAAATTAAATTGGCATTTTGTTGGTTGACTCATGTCTTTTTTATTGTCCTG TTAGGCCCTTGAGATTGTTCTTTCAGTTATTTAGAGTATGATCCATAGTTATCAATAGCATTGCTATCCACCGTAGCATC ACGTCTCGGCCATGTGCCGCTACAAGGACCTCCATAGCGATGCAGTTCACTGTCGTGGCGGAACCCAAAAAATCCGAAAA CCTTGGACAAAAACTATGGTTACCGCAGGAAGTTGTCATCGTAGCCATGACCTCTGTTTTTCTGAAGCACCGCAAGAGGA ATGAAAAGAAGGATGAGGATGGTAGGGAGTCAGATCTGGTGACAGGAGAAGAAATGAATAAGATGAGAAGAAAGCCAGGG AAGGAAGAGGAGTTGCGGTGCTGTGAACTAACGTAGTGTTGCTTTAGCTGTTGGTATCAAAATTGAGTGAAATAAATTAG GGCTTTGGTAGTTAATGGGCTTAAAGCAAAGCCCAATCACATGTTTAAAAAAAAAATAGAAAAGATCTGGTCTTGGTCAA TTTATAAATATTTGAAACAAATAATAAATATATTATAATATACTATAAATATTTTTAAATCATTTAATATTTAAAATATT ATTAGTCAGTATAAATATAATAAAAGGTCTGGTCTTGGTCATCTGTACACCAAAAAAAAAATCAGTCATCCCACTATGTA CCACCCCCCTTTTCCAGATTTTGTGGTGGCCGGTATGCTTCACTATCCGAGATCATCGATCATGGTACAATCAAACTTAA CTGTTTATACTTTATCTAGAGATTTCGGATATGTCCTGAATTTTACTCCTTGTAGCCTGTGCAATCAACGGCATTTTCCC TAACTTGAGTTTCTGAGTTTTAATGTTTTTGCATATTTACATGATATTTGTAAAATCTACTTGAAAATAGTTATGAATTA TATGATCCATGGATCAGTCGATTAAGCTGCTTTGATTATGGGGTTTGTTATTAACTTTTATATCATGACATTTATGTTGT TGATCTCCTTTGTTGTTTCCAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGTGAGCTGC TCATGGGGATTTATGAGAAGGGTTTTGAGAGACCTTCTCCCATCCAAGAAGAAAGCATACCAATTGCTCTTACCGGTAGT GACATTCTTGCTAGGGCTAAAAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCAGCATTGGAAAAAGTTGATCAGGA TAATAATGTTATTCAAGGTTTGACATCATCCTCTTATTCTCAGCTTTACAAGACTCTCACAAATCTAATTGAAAGGACTG TATATAATGATGTCTCAGTTCTGTGAACCTTCTTGTGTCCTGATACTGATTCTGAGTTGTATCCTTCTTAGTGTTGTCAA ATCGCGATCGCGGACCATCGCGGTGAGCCAAAAATCCGCCATTTAGTGGTGAATAGCGGGAATAGCGCGCTATAGTGGGC AATAGCGGCGTTGCGATTAGCCAAAAATCCGCTATGAGCGCCGCTATAGCCGCTATTTGATAACACTGATCCTTCTATTT AAGAAAGAAAAGAAAATGAAATCTATGACAAGATTTAGCTAGATCAGCAATAAATAATTCTGAGAACATGTTGGGCTTCA AAGGGAATCAAATTGGTCATGTTTTTACCTTTTTTGCTTAACTCCTGAAAGTCTCACAAGCTGTTTTAAGTGGATTCATG TGACCCTACAAACCTGCTGTAGCTTGGTCAATTGATAATATCTCTGTCGTTGAATGTTTGGTATATTCAGAATTAGGATT TAAGTGTTGAGTAGCTGCTCCTTGTAATCTTCATTGATCATAATTAATTCTTTATCTTGTGCTCGTGGATGCTGGCCTGT TGTTCGCTGTTGATTGAACCATGTTGAATTAGGATTTAAGTGTTGAGTAGCTGCTCCTTGTAATCTTCATTGATCATAAT TAACTCTTTATCTTGTGCTCGTGGATGCTGGCCTGTTGTTCACTGTTGATTGAACCATTTAAATTCAGAGTTGATATCTC ATTATTTGTTCTCTGCTGCACATATAGTTTATGAACTTCCAAATTCCATTTAACAAAATAGTTTCTTGTTGAATATTGAT AAGTTGTCATTTCTCTTGAAATGTTATTTTATCTGTAAGATGGACGCAGATAAGTTTTGTTGCTAAGATTGAAAATAGTT TTTGTTTTTCGGTGGAACTATGGATGCATAATTTGATAACCATGATGGTATTTTTAGTTATTTTATGGTTTTTGAGTCTT TCAATAAGCACAATGACAGGCTTTACCCATGTTTTGGCTTTATTCTTTGTATTTCTCTATCTTACAGTTGTTATCCTGGT CCCGACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAGCATTTGAAAATTCAAGTTATGGTTA CAACAGGTGGTACCAGTTTGAAAGATGATATAATGCGTTTATATCAACCGGTTCATTTACTAGTCGGAACTCCAGGAAGA ATATTAGATCTTGCTAAAAAGGGTGTTTGTGTTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGTAAATACATTTTA TCTGGAAATTCACTTATTTGTGTTGTACTGAGAAGCATGAACAGTTTGCAACACGGTTGCATATTAAAATAAGTTTAGGA AAATGTGGGTAAGAAACTTGATTGTCTCTTATTAGAGACATGAATGTTCTGATGTGCAGCCATGTTTCTTTAAGTTTTTG TCTGATTTTCTATGATTGTAAATCTGTATCCCAAATGTTGTCAAGCTGTTATTGTAAATCTGATTTTCTATGATTTTTGC TCTTATTTTTTGTTTTAAGATTGTGGCATATCCTTTGTGCATTAATAATGTCTTTATTAGCCAGCACTTAAATCAATCTG TGACTTCACATAGCTATCTGTGTTTCTCAGGCTGATAAGCTTCTATCTTCAGAGTTCCAGCCTTCTATACAGCAACTGAT TGATAGTAAATTTTTGTCTTATCTGCTATGATTGTGAATCTGTATCCCAAATGTTGTCAAGCTGTTATTGAAAGCGAATG CCTCTGTTTACTAACTTATTATTTTCTGTTTTAAATATTGTGGTATATCCTTTGTGCATCTTTATTGTGCATTAATGTCT TTACTAGCCAGCAGTTAAATCAATCTGTGACTTCACATAGCTATCTATGTTTCTCAGGCTGATAAGCTTCTATCTCCAGA GTTCCAACCTTCTATACAGCAGCTGATTCAATTTCTTCCTAGAAACCGTCAAATTCTGATGTTTTCAGCAACATTTCCTG TTACTGTAAAGGATTTCAAAGATAGGTTTCTTCACAAACCATATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGT ATTACGCAATTTTATGCGTTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTTTATTTTCTAAGGTTTGATTTTT CTCTATCCTCTGGGTTTTCTTATATGCTAGCTGTGCATATGGTATTAATAGTGGTTTCTGTTTCAGCTGCAAATAAACCA GTCAATCATTTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACTGAGCTTGGGTATTCATGTTTCT ACATACATGCGAAGATGTTGCAAGACCATCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCCGAAATCTTGTT TGTACTGGTATGTTGCTGACACTTTAGCGTCATCCCAGAAATCAGTATATTGAGTTTTTTCCCATCGCAGTTGCTTGTGA ATGATATCTATCCTACCTGATATGGCTTTACAATACTCAAATGTCTTTGGGTCCTTGTTTCCTTAATTTTGTGTCATTAT CCTCATTCGATTCATAGTTAAAACCAATGTAGTATATACTGTTGATATGTTAAGTGACAAGGTATGTTAAGGAGTCTTTA GTCTGGTATATATGTGTATCTAAACTCATGTTTAGATTTTTAACTCCATATATGTATATTGTCCTGATAATCTTTATCAC TCACTTTTCTTCATGTGTGAAACATTCACAGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAA TTTTGATTTTCCCAAGAATGCAGAAACTTATTTGCACAGGGTATGTTTGATTTCTGCTTATTTTCTACCCAGTTTGTTTT GCTTGATACCGAATATGTTGTACACGTTCTAATGGGTGTTCTATTGATAACAGGTTGGTCGTTCAGGGAGGTTTGGCCAC CTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTTAATTTGTATGTTTTAATTCTGTTGGATAAGTTTTAGAC ATACTTGCTGCAGGATTTTGATGTATTTCTTCTTTTGGTCAGATATAGGATTGAACAAGAACTTGGCACTGAAATCAAGC AAATTCCGCCACACATTGATCAGGCAATTTATTGCCGGTGA
CDS sequence (LotjaGi3g1v0381000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATTTATGAGAAGGGTTTTGAGAGACCTTCTCCCATCCAAGAAGAAAGCATACCAATTGCTCTTACCGGTAGTGA CATTCTTGCTAGGGCTAAAAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCAGCATTGGAAAAAGTTGATCAGGATA ATAATGTTATTCAAGTTGTTATCCTGGTCCCGACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGG AAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGTTTGAAAGATGATATAATGCGTTTATATCAACCGGT TCATTTACTAGTCGGAACTCCAGGAAGAATATTAGATCTTGCTAAAAAGGGTGTTTGTGTTCTGAAAGATTGCTCTATGC TTGTTATGGATGAGGCTGATAAGCTTCTATCTCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCAATTTCTTCCTAGA AACCGTCAAATTCTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTTTCTTCACAAACCATA TGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACGCAATTTTATGCGTTTGTGGAAGAGAGACAGAAAGTCC ACTGCTTAAATACTTTATTTTCTAAGCTGCAAATAAACCAGTCAATCATTTTCTGCAATTCAGTGAATCGGGTTGAACTC CTTGCCAAGAAAATCACTGAGCTTGGGTATTCATGTTTCTACATACATGCGAAGATGTTGCAAGACCATCGTAATAGAGT ATTTCATGACTTCCGCAATGGTGCCTGCCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAG TTAATGTTGTTATTAATTTTGATTTTCCCAAGAATGCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGC CACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGA AATCAAGCAAATTCCGCCACACATTGATCAGGCAATTTATTGCCGGTGA
Protein sequence (LotjaGi3g1v0381000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKVDQDNNVIQVVILVPTRELALQTSQVCKELG KHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLIQFLPR NRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVEL LAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG HLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 347 | 347 | 5.4E-229 | – | |
| PANTHER | 1 | 347 | 347 | 5.4E-229 | – | |
| CDD | 1 | 190 | 190 | 4.16136E-136 | – | |
| ProSiteProfiles | 1 | 16 | 16 | 7.227 | ||
| Gene3D | 1 | 193 | 193 | 2.1E-64 | – | |
| SMART | 7 | 203 | 197 | 1.4E-57 | ||
| Pfam | 13 | 177 | 165 | 5.8E-45 | ||
| ProSiteProfiles | 19 | 189 | 171 | 29.214 | ||
| SUPERFAMILY | 58 | 342 | 285 | 6.35E-71 | ||
| ProSitePatterns | 135 | 143 | 9 | - | ||
| Gene3D | 194 | 362 | 169 | 1.0E-54 | – | |
| ProSiteProfiles | 199 | 359 | 161 | 24.133 | ||
| CDD | 200 | 329 | 130 | 2.2868E-57 | – | |
| Pfam | 214 | 320 | 107 | 4.1E-28 | ||
| SMART | 239 | 320 | 82 | 1.2E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0381000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…