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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0425500 |
| Transcript ID | LotjaGi3g1v0425500.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT3G13772.1 transmembrane nine 7; Swiss-Prot: sp|Q9LIC2|TMN7_ARATH Transmembrane 9 superfamily member 7; TrEMBL-Plants: tr|A0A072TLT0|A0A072TLT0_MEDTR Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0425500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83509814..83512813) extracted from Lotus japonicus Gifu genome v1.2.
ATCCCGTCGCAGACCCCTGCCGCGCACTATCGATAACTATGGTGTTGAGTGATAAATCTTGATTTTGATTTTGATAATTG GTAGGTGCATGTGAAACTGTTTGTTAGATAGGGATGTGTGGTATGTGGTCGCGTGTGATTTGTGAATTCGTAATTTTTTA GTTTTGATTTGGAAAGTGTGGTTGAGATTGAGAACGTTTTGTCTCAATTTGTTGATTTTTTTGGGTTCTAGTTTTATTGC TTGTGCTTGAAGATTTTGATTTCTTGTTTCTTCTGTGGGAACAGGGTGATGCCCTTTATGTCAAAGTGAACAAATTATCA TCTACCAAGACTCAACTTCCGTATGACTACTACTACTTGAAGTATTGCAAACCCTCCAAGATTCTGAACAGCGCAGAAAA TTTGGGAGAGGTTCTTCGAGGCGATCGTATTGAAAATTCTATATATACGGTGGGTATCTATCACCTCTTCCTGTAACAAT TGGATAACATGGCCATGGAATTCAGTGACTATTGTTTGTTTTGTTATGCCAACCTAAGGAATTTTGTTCTCTTTTCCCCT CAGTTTCACATGAGGAAAGAACAGTCTTGTACTGTTTCTTGTCATCAAATTTTGGATGCTGAAGCTGCGAAGAATTTTAA AGAAAAAATTGATGATGAATATCGAGTGAACATGTAAGTGTTCAGTATACTGAGGCCGGTACCTAGTTATATAGTAGTAT TATGAATTTATCAAATTACTCTTCTGAGATTTGTAGGCCAGTTTATACTTTATAGGTTTCTTTCGGCTTTGTATTTCTTT GATCCTTAAAGCTTTGAATTGAACATGCAGGATTTTGGATAACCTTCCAGTTGCTGTTCTTAGACAAAGGAGGGATGGAA GTCAATCAACAACATATGAGCATGGTTTTCGTGTTGGGTTCAAGGGAAACTATCAAGGGGTATAACTCAGCTTGAATTTC TATTGTGGAATTTCAATTATCATTTTTGTCTTCTGATTCTTACAATTTTCCAATTTTCCTGCAGAGCAAGGAAGAGAAAT ATTTTATCAATAACCACTTGAGTTTTAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGCATTGTTGGATTT GAGGTCACACCAAACAGGTCTTGTTCTTTTCTTCACCTTCCTAACTCTCTCTCTCTCTCTCTCTACATATGTGTGTGTGT TTATGTATCTGCTTACGGGGTAGTTCATTCTTATGTTGGCATAACATGGCCGTTGGATTTTATTTTTTATATCTGGAATT GGATGTTGTTTGGAAGAAAGCAAGCTGGAACTGATTAGTTGGATGATTTTCTAATAGATCTTACCTATGTGGTGATATAG CTTTTGTTCTAATAATATTTTGTCATAGACATCTTATGGATGGTCTCTTAGATACTCCTGTCCTCTTTCCTGATAGGTAT CATACTTTTTGCTTTTTACAATTTTGCTTGTTCACCTGTGTTGAGTATATTTTTTATAATAGAGTACCTAACTACCTATA TATATGATTGCTTTCTTGTTACATTTCAAATGACTGCTTAAGGTATGTTCTGTCTCTCTTATGAGTTCTACAAATGTAAA CAGTATTAATCATGAATACAAGGAGTGGAATGACAAAAATCCGCAAGTAACAACATGTAATAAAGATACCAAGAATTTGA TGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAGGCAAGGACATCGTATTCACATATGATGTTTCCTTTAAGGTATTG CTGATTGAAAGCTTGACATTCATCAACTCTCACCTCATCCATTATATGACTCTATAAGCTAAGTTTTCTGCCCCTTTTCC AGGAAAGTGATATCAAATGGGCATCACGATGGGACACATATCTTCTAATGAATGATGATCAGATCCACTGGTTTTCTATC ATAAACTCTCTGATGATTGTGCTTTTCCTTTCTGGAATGGTGGCAATGATCATGATGAGGACTCTTTACAGAGACATTGC CAATTATAACCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTTTCAGGG CACCAGTCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACAATGATA TTTGCTTTGCTAGGGTTCCTATCTCCGTCCAATCGGGGTGGTCTCATGACTGCAATGGTTCTATTGTGGGTTTTTATGGG TTTATTTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAGTGGAAGAGGAATACCTTAAAAACTG CATTTATGTTTCCAGGCATACTTTTCGCTATCTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAAAAGTCCTCTGGAGCA GTCCCTTTTGGAACAATGTTCGCTCTAGTCTGCCTATGGTTTGGTATTTCAGTGCCCTTGGTCTTTGTGGGCAGTTACTT GGGTTTTAAAAAACCAGCAATTGAAGACCCTGTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCATGGTACA TGACACCCGTCTTCTCTATTCTTATTGGTGGCATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATCCTGACA TCAATATGGCTAAACCAGTTCTACTACATCTTTGGCTTCCTTTTCATAGTGTTTGTTATCCTATTGATCACCTGTGCAGA GATTACGGTTGTGCTTTGCTACTTCCAATTGTGCAGTGAAGACTACAACTGGTGGTGGAGAGCTTACCTTACTGCTGGAT CCTCAGCTCTGTACCTCTTCCTTTACTCAATTTTCTATTTCTTCACTAAGTTGGAGATTACAAAGCTGGTCTCGGGCATC CTTTACTTTGGATATATGGTAATTGGTTCATATGCCTTCTTTGTGTTGACTGGAACTATTGGCTTCTATGCTTGCTTCTG GTTTGTCCGCAAGATCTACTCTTCTGTGAAGATTGACTGA
CDS sequence (LotjaGi3g1v0425500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATGCCCTTTATGTCAAAGTGAACAAATTATCATCTACCAAGACTCAACTTCCGTATGACTACTACTACTTGAA GTATTGCAAACCCTCCAAGATTCTGAACAGCGCAGAAAATTTGGGAGAGGTTCTTCGAGGCGATCGTATTGAAAATTCTA TATATACGTTTCACATGAGGAAAGAACAGTCTTGTACTGTTTCTTGTCATCAAATTTTGGATGCTGAAGCTGCGAAGAAT TTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATGATTTTGGATAACCTTCCAGTTGCTGTTCTTAGACAAAGGAG GGATGGAAGTCAATCAACAACATATGAGCATGGTTTTCGTGTTGGGTTCAAGGGAAACTATCAAGGGAGCAAGGAAGAGA AATATTTTATCAATAACCACTTGAGTTTTAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGCATTGTTGGA TTTGAGGTCACACCAAACAGTATTAATCATGAATACAAGGAGTGGAATGACAAAAATCCGCAAGTAACAACATGTAATAA AGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAGGCAAGGACATCGTATTCACATATGATG TTTCCTTTAAGGAAAGTGATATCAAATGGGCATCACGATGGGACACATATCTTCTAATGAATGATGATCAGATCCACTGG TTTTCTATCATAAACTCTCTGATGATTGTGCTTTTCCTTTCTGGAATGGTGGCAATGATCATGATGAGGACTCTTTACAG AGACATTGCCAATTATAACCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATG TTTTCAGGGCACCAGTCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTG ACAATGATATTTGCTTTGCTAGGGTTCCTATCTCCGTCCAATCGGGGTGGTCTCATGACTGCAATGGTTCTATTGTGGGT TTTTATGGGTTTATTTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAGTGGAAGAGGAATACCT TAAAAACTGCATTTATGTTTCCAGGCATACTTTTCGCTATCTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAAAAGTCC TCTGGAGCAGTCCCTTTTGGAACAATGTTCGCTCTAGTCTGCCTATGGTTTGGTATTTCAGTGCCCTTGGTCTTTGTGGG CAGTTACTTGGGTTTTAAAAAACCAGCAATTGAAGACCCTGTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGG CATGGTACATGACACCCGTCTTCTCTATTCTTATTGGTGGCATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTT ATCCTGACATCAATATGGCTAAACCAGTTCTACTACATCTTTGGCTTCCTTTTCATAGTGTTTGTTATCCTATTGATCAC CTGTGCAGAGATTACGGTTGTGCTTTGCTACTTCCAATTGTGCAGTGAAGACTACAACTGGTGGTGGAGAGCTTACCTTA CTGCTGGATCCTCAGCTCTGTACCTCTTCCTTTACTCAATTTTCTATTTCTTCACTAAGTTGGAGATTACAAAGCTGGTC TCGGGCATCCTTTACTTTGGATATATGGTAATTGGTTCATATGCCTTCTTTGTGTTGACTGGAACTATTGGCTTCTATGC TTGCTTCTGGTTTGTCCGCAAGATCTACTCTTCTGTGAAGATTGACTGA
Protein sequence (LotjaGi3g1v0425500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDALYVKVNKLSSTKTQLPYDYYYLKYCKPSKILNSAENLGEVLRGDRIENSIYTFHMRKEQSCTVSCHQILDAEAAKN FKEKIDDEYRVNMILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDPETGSARIVG FEVTPNSINHEYKEWNDKNPQVTTCNKDTKNLMQGSTVPQEVDTGKDIVFTYDVSFKESDIKWASRWDTYLLMNDDQIHW FSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQDEAQEETGWKLVHGDVFRAPVNSNLLCVYVGTGVQIFAMTLV TMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKRNTLKTAFMFPGILFAIFFVLNALIWGEKS SGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQVPEQAWYMTPVFSILIGGILPFGAVFIELFF ILTSIWLNQFYYIFGFLFIVFVILLITCAEITVVLCYFQLCSEDYNWWWRAYLTAGSSALYLFLYSIFYFFTKLEITKLV SGILYFGYMVIGSYAFFVLTGTIGFYACFWFVRKIYSSVKID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 237 | 237 | - | – | |
| PANTHER | 2 | 602 | 601 | 0.0 | ||
| PANTHER | 2 | 602 | 601 | 0.0 | – | |
| Pfam | 20 | 558 | 539 | 8.5E-226 | ||
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 238 | 261 | 24 | - | – | |
| SUPERFAMILY | 243 | 424 | 182 | 2.46E-5 | ||
| Phobius | 262 | 303 | 42 | - | – | |
| TMHMM | 304 | 326 | 23 | - | – | |
| Phobius | 304 | 330 | 27 | - | – | |
| CDD | 311 | 573 | 263 | 6.36831E-4 | – | |
| Phobius | 331 | 335 | 5 | - | – | |
| TMHMM | 336 | 358 | 23 | - | – | |
| Phobius | 336 | 355 | 20 | - | – | |
| Phobius | 356 | 375 | 20 | - | – | |
| Phobius | 376 | 397 | 22 | - | – | |
| TMHMM | 378 | 397 | 20 | - | – | |
| Phobius | 398 | 408 | 11 | - | – | |
| TMHMM | 407 | 429 | 23 | - | – | |
| Phobius | 409 | 432 | 24 | - | – | |
| Phobius | 433 | 452 | 20 | - | – | |
| Phobius | 453 | 486 | 34 | - | – | |
| TMHMM | 461 | 483 | 23 | - | – | |
| Phobius | 487 | 491 | 5 | - | – | |
| Phobius | 492 | 518 | 27 | - | – | |
| TMHMM | 493 | 515 | 23 | - | – | |
| Phobius | 519 | 529 | 11 | - | – | |
| TMHMM | 528 | 550 | 23 | - | – | |
| Phobius | 530 | 551 | 22 | - | – | |
| Phobius | 552 | 562 | 11 | - | – | |
| Phobius | 563 | 592 | 30 | - | – | |
| TMHMM | 570 | 592 | 23 | - | – | |
| Phobius | 593 | 602 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0425500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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