Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0425500 |
Transcript ID | LotjaGi3g1v0425500.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transmembrane 9 superfamily member; TAIR: AT3G13772.1 transmembrane nine 7; Swiss-Prot: sp|Q9LIC2|TMN7_ARATH Transmembrane 9 superfamily member 7; TrEMBL-Plants: tr|I1KGC3|I1KGC3_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0425500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83509927..83512813) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGTGGTATGTGGTCGCGTGTGATTTGTGAATTCGTAATTTTTTAGTTTTGATTTGGAAAGTGTGGTTGAGATTGAGA ACGTTTTGTCTCAATTTGTTGATTTTTTTGGGTTCTAGTTTTATTGCTTGTGCTTGAAGATTTTGATTTCTTGTTTCTTC TGTGGGAACAGGGTGATGCCCTTTATGTCAAAGTGAACAAATTATCATCTACCAAGACTCAACTTCCGTATGACTACTAC TACTTGAAGTATTGCAAACCCTCCAAGATTCTGAACAGCGCAGAAAATTTGGGAGAGGTTCTTCGAGGCGATCGTATTGA AAATTCTATATATACGGTGGGTATCTATCACCTCTTCCTGTAACAATTGGATAACATGGCCATGGAATTCAGTGACTATT GTTTGTTTTGTTATGCCAACCTAAGGAATTTTGTTCTCTTTTCCCCTCAGTTTCACATGAGGAAAGAACAGTCTTGTACT GTTTCTTGTCATCAAATTTTGGATGCTGAAGCTGCGAAGAATTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GTAAGTGTTCAGTATACTGAGGCCGGTACCTAGTTATATAGTAGTATTATGAATTTATCAAATTACTCTTCTGAGATTTG TAGGCCAGTTTATACTTTATAGGTTTCTTTCGGCTTTGTATTTCTTTGATCCTTAAAGCTTTGAATTGAACATGCAGGAT TTTGGATAACCTTCCAGTTGCTGTTCTTAGACAAAGGAGGGATGGAAGTCAATCAACAACATATGAGCATGGTTTTCGTG TTGGGTTCAAGGGAAACTATCAAGGGGTATAACTCAGCTTGAATTTCTATTGTGGAATTTCAATTATCATTTTTGTCTTC TGATTCTTACAATTTTCCAATTTTCCTGCAGAGCAAGGAAGAGAAATATTTTATCAATAACCACTTGAGTTTTAGAGTCA TGTATCACAAGGATCCTGAAACTGGTTCTGCTCGCATTGTTGGATTTGAGGTCACACCAAACAGGTCTTGTTCTTTTCTT CACCTTCCTAACTCTCTCTCTCTCTCTCTCTACATATGTGTGTGTGTTTATGTATCTGCTTACGGGGTAGTTCATTCTTA TGTTGGCATAACATGGCCGTTGGATTTTATTTTTTATATCTGGAATTGGATGTTGTTTGGAAGAAAGCAAGCTGGAACTG ATTAGTTGGATGATTTTCTAATAGATCTTACCTATGTGGTGATATAGCTTTTGTTCTAATAATATTTTGTCATAGACATC TTATGGATGGTCTCTTAGATACTCCTGTCCTCTTTCCTGATAGGTATCATACTTTTTGCTTTTTACAATTTTGCTTGTTC ACCTGTGTTGAGTATATTTTTTATAATAGAGTACCTAACTACCTATATATATGATTGCTTTCTTGTTACATTTCAAATGA CTGCTTAAGGTATGTTCTGTCTCTCTTATGAGTTCTACAAATGTAAACAGTATTAATCATGAATACAAGGAGTGGAATGA CAAAAATCCGCAAGTAACAACATGTAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATA CAGGCAAGGACATCGTATTCACATATGATGTTTCCTTTAAGGTATTGCTGATTGAAAGCTTGACATTCATCAACTCTCAC CTCATCCATTATATGACTCTATAAGCTAAGTTTTCTGCCCCTTTTCCAGGAAAGTGATATCAAATGGGCATCACGATGGG ACACATATCTTCTAATGAATGATGATCAGATCCACTGGTTTTCTATCATAAACTCTCTGATGATTGTGCTTTTCCTTTCT GGAATGGTGGCAATGATCATGATGAGGACTCTTTACAGAGACATTGCCAATTATAACCAGCTAGAAACCCAAGATGAGGC CCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTTTCAGGGCACCAGTCAATTCAAATTTGCTTTGTGTTTATG TTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACAATGATATTTGCTTTGCTAGGGTTCCTATCTCCGTCCAAT CGGGGTGGTCTCATGACTGCAATGGTTCTATTGTGGGTTTTTATGGGTTTATTTGCTGGCTACTCCTCAGCACGTTTGTA CAAGATGTTCAAGGGCACAGAGTGGAAGAGGAATACCTTAAAAACTGCATTTATGTTTCCAGGCATACTTTTCGCTATCT TCTTTGTGCTGAATGCTTTAATCTGGGGGGAAAAGTCCTCTGGAGCAGTCCCTTTTGGAACAATGTTCGCTCTAGTCTGC CTATGGTTTGGTATTTCAGTGCCCTTGGTCTTTGTGGGCAGTTACTTGGGTTTTAAAAAACCAGCAATTGAAGACCCTGT GAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCATGGTACATGACACCCGTCTTCTCTATTCTTATTGGTGGCA TTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATCCTGACATCAATATGGCTAAACCAGTTCTACTACATCTTT GGCTTCCTTTTCATAGTGTTTGTTATCCTATTGATCACCTGTGCAGAGATTACGGTTGTGCTTTGCTACTTCCAATTGTG CAGTGAAGACTACAACTGGTGGTGGAGAGCTTACCTTACTGCTGGATCCTCAGCTCTGTACCTCTTCCTTTACTCAATTT TCTATTTCTTCACTAAGTTGGAGATTACAAAGCTGGTCTCGGGCATCCTTTACTTTGGATATATGGTAATTGGTTCATAT GCCTTCTTTGTGTTGACTGGAACTATTGGCTTCTATGCTTGCTTCTGGTTTGTCCGCAAGATCTACTCTTCTGTGAAGAT TGACTGA
CDS sequence (LotjaGi3g1v0425500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAAGAACAGTCTTGTACTGTTTCTTGTCATCAAATTTTGGATGCTGAAGCTGCGAAGAATTTTAAAGAAAAAAT TGATGATGAATATCGAGTGAACATGATTTTGGATAACCTTCCAGTTGCTGTTCTTAGACAAAGGAGGGATGGAAGTCAAT CAACAACATATGAGCATGGTTTTCGTGTTGGGTTCAAGGGAAACTATCAAGGGAGCAAGGAAGAGAAATATTTTATCAAT AACCACTTGAGTTTTAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGCATTGTTGGATTTGAGGTCACACC AAACAGTATTAATCATGAATACAAGGAGTGGAATGACAAAAATCCGCAAGTAACAACATGTAATAAAGATACCAAGAATT TGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAGGCAAGGACATCGTATTCACATATGATGTTTCCTTTAAGGAA AGTGATATCAAATGGGCATCACGATGGGACACATATCTTCTAATGAATGATGATCAGATCCACTGGTTTTCTATCATAAA CTCTCTGATGATTGTGCTTTTCCTTTCTGGAATGGTGGCAATGATCATGATGAGGACTCTTTACAGAGACATTGCCAATT ATAACCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTTTCAGGGCACCA GTCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACAATGATATTTGC TTTGCTAGGGTTCCTATCTCCGTCCAATCGGGGTGGTCTCATGACTGCAATGGTTCTATTGTGGGTTTTTATGGGTTTAT TTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAGTGGAAGAGGAATACCTTAAAAACTGCATTT ATGTTTCCAGGCATACTTTTCGCTATCTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAAAAGTCCTCTGGAGCAGTCCC TTTTGGAACAATGTTCGCTCTAGTCTGCCTATGGTTTGGTATTTCAGTGCCCTTGGTCTTTGTGGGCAGTTACTTGGGTT TTAAAAAACCAGCAATTGAAGACCCTGTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCATGGTACATGACA CCCGTCTTCTCTATTCTTATTGGTGGCATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATCCTGACATCAAT ATGGCTAAACCAGTTCTACTACATCTTTGGCTTCCTTTTCATAGTGTTTGTTATCCTATTGATCACCTGTGCAGAGATTA CGGTTGTGCTTTGCTACTTCCAATTGTGCAGTGAAGACTACAACTGGTGGTGGAGAGCTTACCTTACTGCTGGATCCTCA GCTCTGTACCTCTTCCTTTACTCAATTTTCTATTTCTTCACTAAGTTGGAGATTACAAAGCTGGTCTCGGGCATCCTTTA CTTTGGATATATGGTAATTGGTTCATATGCCTTCTTTGTGTTGACTGGAACTATTGGCTTCTATGCTTGCTTCTGGTTTG TCCGCAAGATCTACTCTTCTGTGAAGATTGACTGA
Protein sequence (LotjaGi3g1v0425500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKEQSCTVSCHQILDAEAAKNFKEKIDDEYRVNMILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFIN NHLSFRVMYHKDPETGSARIVGFEVTPNSINHEYKEWNDKNPQVTTCNKDTKNLMQGSTVPQEVDTGKDIVFTYDVSFKE SDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQDEAQEETGWKLVHGDVFRAP VNSNLLCVYVGTGVQIFAMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKRNTLKTAF MFPGILFAIFFVLNALIWGEKSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQVPEQAWYMT PVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITVVLCYFQLCSEDYNWWWRAYLTAGSS ALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIGSYAFFVLTGTIGFYACFWFVRKIYSSVKID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 544 | 544 | 0.0 | ||
Phobius | 1 | 179 | 179 | - | – | |
PANTHER | 1 | 544 | 544 | 0.0 | – | |
Pfam | 1 | 500 | 500 | 1.2E-209 | ||
Phobius | 180 | 203 | 24 | - | – | |
TMHMM | 180 | 202 | 23 | - | – | |
SUPERFAMILY | 184 | 366 | 183 | 1.99E-5 | ||
Phobius | 204 | 245 | 42 | - | – | |
TMHMM | 246 | 268 | 23 | - | – | |
Phobius | 246 | 272 | 27 | - | – | |
CDD | 253 | 515 | 263 | 0.00350552 | – | |
Phobius | 273 | 277 | 5 | - | – | |
TMHMM | 278 | 300 | 23 | - | – | |
Phobius | 278 | 297 | 20 | - | – | |
Phobius | 298 | 317 | 20 | - | – | |
Phobius | 318 | 339 | 22 | - | – | |
TMHMM | 320 | 339 | 20 | - | – | |
Phobius | 340 | 350 | 11 | - | – | |
TMHMM | 349 | 371 | 23 | - | – | |
Phobius | 351 | 374 | 24 | - | – | |
Phobius | 375 | 394 | 20 | - | – | |
Phobius | 395 | 428 | 34 | - | – | |
TMHMM | 403 | 425 | 23 | - | – | |
Phobius | 429 | 433 | 5 | - | – | |
Phobius | 434 | 460 | 27 | - | – | |
TMHMM | 435 | 457 | 23 | - | – | |
Phobius | 461 | 471 | 11 | - | – | |
TMHMM | 470 | 492 | 23 | - | – | |
Phobius | 472 | 493 | 22 | - | – | |
Phobius | 494 | 504 | 11 | - | – | |
Phobius | 505 | 534 | 30 | - | – | |
TMHMM | 512 | 534 | 23 | - | – | |
Phobius | 535 | 544 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0425500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…