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LotjaGi3g1v0438600.2

Overview

Field Value
Gene ID LotjaGi3g1v0438600
Transcript ID LotjaGi3g1v0438600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Cytochrome b6-f complex iron-sulfur subunit; TAIR: AT4G03280.1 photosynthetic electron transfer C; Swiss-Prot: sp|P26291|UCRIA_PEA Cytochrome b6-f complex iron-sulfur subunit, chloroplastic; TrEMBL-Plants: tr|I3RZ73|I3RZ73_LOTJA Cytochrome b6-f complex iron-sulfur subunit; Found in the gene: LotjaGi3g1v0438600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:85169470..85171589) extracted from Lotus japonicus Gifu genome v1.2.

CAAGCAAGTGAGAGTTTTTGTTTTGATTTCAGCTATGTTCTGGAAAGAGTGGAATTTTCTGTCCCTCACAAGCGCTTCTT GTGAAACCAGCAAGGAACCAGATGGTGGGGAAGGCCAAGGGGATTAGAATTGCTTGCATGGCTACCAGCATTCCTGCTGA TCGAGTCCCTGATATGGAGAAAAGGAAGCTCTTGAATTTGCTTCTTCTTGGTGCTATTTCACTCCCCAGTGCTGGAATGC TTGTCCCTTATGCCACCTTCTTCGCCCCTCCAGGGTAGGTTAACCTTCTCCATTATTGTTTTTATAGAAATTGAACTAGT AACTCAACCTATTTATGAATTGTGTTTTGGGTGTACTTATTGAACTCAACTGTTCCACTTTTTTGTTTTGCACTAGTAAC AACGGATATCCAAACATAGCTATATGACTTGTACAATTGTGTGAATTGGTGTATAGTTTTAATCATATCTGTTTGTAGGT TTTGAATTAATTTTCTAAGTCTTAACCATTGTAGAGCAAAAGGATGGTTATTAGCAATCAGCTTTTCCTACTATAATTAA AGAAGCACTAAGAAAATTGGTAAAATATTTGGTATTAATAGTCCTCTTGAACTAATAGTTCATGTGATCTAAGGGGGATT GGATCCTCTCCAATGTCATGACCGCTGGAGAGAGATTTCAACCGTCCAAAATTTGGTGGAGTAAAAGGTTATTCTGGATG GCTAGGATTTTTCTCCACTGTCGTGTCATTGAGAAGCATTCCTTACAAACCTTGAATTTGATTTCATTTCCCTTGATATG TAACGTTTTACTTAAACATAATTGTACAACAGCTTGAGGCTAATTCTTGTTTGGTTATAATGGTCGTGATTTTTACTGTG AGAGGGAAAGAAATGATGGAAGTTAAAACTTGGGGCATATTCCTATTGTTTGGGAGGAGTATGGAATTGATTGTTTCTTA CTTCTTGAAATGTTGCTTCCATTCTTAGCACTTTGCTTTCTTTTCATGTTAGCTTTAAAAGTTTTAATACATTGTATAAA CTTATCTTATTATAATACAACATGCTAAAAGAGTCCTTAAACTGTTATTTGGTTCAAAGGAACACATATCCTAAAAGAAT CAAAATTCAGTGATTAACTGTTGACCTGCCAATGTGCTGTATATTAATCTTAGTTTCTTCATCTATGCAAATTGCAGGTC AGGTTCTGCAACTGGTGGTACTATTGCAAAGGATGCCATTGGAAATGATGTAGTTGCAGAGCAATGGCTCAAGGCACATG GACCTGGTGACCGTACGCTTACACAAGGATTGAAGGTACGAAGTGCTTACAGCCGTTCATTGGCTAGAGTTTTCATAGAT CTTCCACAAGCTGCAGATACTTTACATATAATGTTGAAAGCAATTGTTTTCTCAGACTATTATAGTATTATGCTTCAATG TTCAATGCCATTTCCCATTGCTTCTTTCCTTCTTCTCAATGTTATTCTCTTTGCTCAACAAAATTATCTTGCCATACTAT GCAAAATTTATGTGGTAAATTGCAATTCTAGCCATAACAAGTTAACAACCCAAGATCTGGCCTTATATAAGTAAAATAAA TTTCCTTCTCAAGCTTCCTAGTTCCTACCATAATAACTATTTTCATGATTTGAATCCCAGGGAGATCCTACCTACCTTGT GGTGGAGAAAGACAGAACACTTGCAACATATGGTATTAACGCTGTTTGCACCCACCTTGGGTGTGTCGTGCCGTTTAATA CAGCTGAGAAAAAGTTCATCTGCCCCTGCCATGGATCTCAGTACAATGACCAAGGAAGAGTTGTGAGAGGACCTGCTCCC TTGGTAAGCAAATTAGAAAAACCTTTTCTTTTGACATTCTTTTCGCTGCATGTGTTTTGACTTAGAAGCATAGCATTTAG ACTTGTTATGGTTTATTTCTTAGAACTTGCTTCACTTATCTGTTACTCTAATTACTGTACTAGCATTGAATATTTTTGTT GTTCTTGTTGTATGTCAGTCTCTGGCATTGGCACATTGTGATGTGGTTGATGGGAAGGTGGTGTTTGTTCCTTGGGTCGA AACAGATTTCAGAACTGGTGATGCTCCATGGTGGGCTTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0438600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGGGAAGGCCAAGGGGATTAGAATTGCTTGCATGGCTACCAGCATTCCTGCTGATCGAGTCCCTGATATGGAGAA AAGGAAGCTCTTGAATTTGCTTCTTCTTGGTGCTATTTCACTCCCCAGTGCTGGAATGCTTGTCCCTTATGCCACCTTCT TCGCCCCTCCAGGGTCAGGTTCTGCAACTGGTGGTACTATTGCAAAGGATGCCATTGGAAATGATGTAGTTGCAGAGCAA TGGCTCAAGGCACATGGACCTGGTGACCGTACGCTTACACAAGGATTGAAGGGAGATCCTACCTACCTTGTGGTGGAGAA AGACAGAACACTTGCAACATATGGTATTAACGCTGTTTGCACCCACCTTGGGTGTGTCGTGCCGTTTAATACAGCTGAGA AAAAGTTCATCTGCCCCTGCCATGGATCTCAGTACAATGACCAAGGAAGAGTTGTGAGAGGACCTGCTCCCTTGTCTCTG GCATTGGCACATTGTGATGTGGTTGATGGGAAGGTGGTGTTTGTTCCTTGGGTCGAAACAGATTTCAGAACTGGTGATGC TCCATGGTGGGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0438600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVGKAKGIRIACMATSIPADRVPDMEKRKLLNLLLLGAISLPSAGMLVPYATFFAPPGSGSATGGTIAKDAIGNDVVAEQ WLKAHGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPFNTAEKKFICPCHGSQYNDQGRVVRGPAPLSL ALAHCDVVDGKVVFVPWVETDFRTGDAPWWA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 29 29 - –
PANTHER
PTHR10134:SF5
2 191 190 4.7E-112 –
PANTHER
PTHR10134
2 191 190 4.7E-112
IPR014349
Gene3D
G3DSA:1.20.5.700
13 56 44 1.3E-14 –
Hamap
MF_01335
14 191 178 37.031
IPR023960
SUPERFAMILY
SSF50022
20 190 171 2.06E-32
IPR036922
Pfam
PF08802
20 58 39 2.0E-18 –
Phobius
TRANSMEMBRANE
30 51 22 - –
TMHMM
TMhelix
30 52 23 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
52 191 140 - –
Gene3D
G3DSA:2.102.10.10
57 191 135 3.8E-45
IPR036922
CDD
cd03471
66 191 126 1.22864E-90 –
ProSiteProfiles
PS51296
78 174 97 21.513
IPR017941
Pfam
PF00355
103 160 58 3.5E-12
IPR017941
PRINTS
PR00162
115 126 12 9.5E-15
IPR005805
PRINTS
PR00162
136 148 13 9.5E-15
IPR005805
PRINTS
PR00162
148 160 13 9.5E-15
IPR005805

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008121
Molecular function Ubiquinol-cytochrome-c reductase activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0016679
Molecular function Oxidoreductase activity, acting on diphenols and related substances as donors Catalysis of an oxidation-reduction (redox) reaction in which a diphenol or related substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
Subterm of
GO:0045158
Molecular function Electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity Enables the directed movement of electrons within the cytochrome b6/f complex of photosystem II.
Subterm of
GO:0051537
Molecular function 2 iron, 2 sulfur cluster binding Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0438600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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