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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0442500 |
| Transcript ID | LotjaGi3g1v0442500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q2IJI0|ACEK_ANADE Isocitrate dehydrogenase kinase/phosphatase; TrEMBL-Plants: tr|A0A151RIX3|A0A151RIX3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0442500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85533478..85537878) extracted from Lotus japonicus Gifu genome v1.2.
AATACATGTAATTATACACGTGTGAGTTAAATTAAGCACGTGTTATGTGTTATTTAGATTCAGTTAGAGGTAGTTAGTGT TTAGTTACAATTAGTTACAGAGTTTGTTAGTGGTTTAGAGAGTTTGTTAGAGTTTTCTTTTGCTCTCAGCTTCTGTATAT AAAGAACTTTGATCAATGAATAGAATCACCGTTTCAGAAATTAACAAATCACTTTCTATATGGTATCAGATTAAGCTACA CGCTTTCTTCCGCACTCTCTTCCTCGTTTCCACATCGATCTTGTGATCGATTGGAATCGATTTTGCCTCTTTTCTCTCTG ATTTAGTCTCTGCATCTTCTCTTCGATGCCTTCATCCATGGATGATTTCTCAGATCCATACTTTCTGCATCATTCTGATG GCCCAGGCTTGGTTCTGGTTTCACAACCATTGACCGGTTCAAACTACAACACCTGGAGTCGATCTATGCTTGTTGCTCTC TCGGTGAAGAACAAGGTTTCCTTCATCAATGGATCGTTGCCCTGTCCTGCTGCTTCCGATCCTAACTACCGTGCTTGGAA TCGCGGTAACAATGTTGTGATTTCTTGGATCTTCAATTCTGTTTCCAAAGAAATCGCTGCCAGTATCATGTACTCTGGTA CAGCACTGGAGATTTGGCAGGATTTGCGCGAGCGTTTTGCACAGAAAAATGGCCCGCGTGTGTTTCAGCTTCGCCGAGAA TTGATGAGTCTTCATCAAGGATCTGATTCGGTGAGCGTTTACTACACGAAATTGAAGACGATTTAGGATGAATTGCTCAT ATACAAGCCAGTCGTGAATTGCATTTGTGGAGCGATTCAACCGTTGCTGGTTCATTCTGAAACCAAGCATGTCATGAATT TCTTGATGGGATTGAACGATTCCTTCTCCCAGGTTCGTGGAAGTCTGCTGCTTATGGATCCTATTCCACCGATCAACAAG GTTTTCTCCCTTGTTATCCAGGAGGAGAAACAGCGAGAGGTCGGTGCTGGCAATGGCGTCTCTGAACATTCTTCCCAGGC TTTTGCTGCAGCTAGCTCACAGGGAGGCTCTCGTTCTTCCGATTCCGCCGATAAAGCCAAGAACTCCAAGAAGGATCGTC CAATATGTTCTCACTGTGGAATTCCTGGCCACACAGCTGCAAAGTGCTTCAAATTACATGGTTATCCACCAGGAATGAAG CCAAAATCCAGCAAGTCTCAAACTACTGCAGTTGCTGGCCAAGCTTCTGGAAATTTCCAGCAATCATCTGAAGGCCAGAA TGTTGTCACAACCTTATCTCCTTATCAGTGTACTCAATTGATTCAGTTGCTTACACATCAACTTACCACAACTTCTCAGC CCTCAAAAGATGTTCCTGAATCCTCATGCACCAAATCAGGTATTATCTTGACCAATTCTATCTCTATGATGCATCCTAGG CTAAGAAATTTGTGGATAGTTGATTCTGGCGCCACACATCATATTTGCTATGATCACTCTTTGTTTTCCAAGTATGAATA TGTACAATCAGCCACTATAACATTACCAAACAAAGCACATGTTTCAGTTCAAGGCATTGACACTGTGCATTTATCCCCAA ATCTTGTGCTGCATAATGTTTTTCATGTCCCTTGCTTCCAATACAACTTGTTATCTGCATCAGCTTTGTTTAAAACTTAT TCAAACTACAAGATTATTTTGTTGAAACAGTTTCTTGTTGTACAGGGCAACCTCACTTTGAGGATGATTGGGAATGCTAA TTCTCAAAATGGCTTGTATTACTTAGATACTAGGACTTTGGATAAGATGTCACACTTGAATTCTGTTTTCCCTTTTACTT CTGTTGTAACTAGTATAGATACTAGTTCTGTTTTCCCTTCATGTACAAAGGTAGCCAAATGTCTATGGCACTATAGACTA GGCCATTTATCTTTTCAGTATCATGATATGTTGCCTACAACTTGTAAGATACCTGTTTCTCTTTCACATGAAATAAAATC TTGTCCTATTTGTCCATTGGCAAAGCAACATAGGTTAGCTTTTCCATCTAGTCAACATATTTCAAAGAGCATTTTTGATC TTTTGCATATTGATGTGTGGGGCCCTTATAAGACTGTTACACATACTGGACACAAATATTTCTTAACTTTAGTTGATGAT CATAGTCGATATACTTGGGTTGTTCTCATGAAGAACAAATCAGAGGCACCACAAATCATTAAGCATTTTTTTCAGTTTGT TAAAACACAATTTAACATAACTGTTAAGGCAATTCGTACTGACAATGCCAAAGAGCTTCCCTTGTCTTCTTTCCTAAGTG AAATGGGGGCACAACATCAATTCTCTTGTGTAGAAACACCACAACAAAATTCTGTTGTGGAACGGAAGCATCAGCACTTG CTTAATGTCACTAGAAGTCTTCTCTTCCAGTCACGGGTTCCTATCCGGTTCTGAGGTGAATGCTTGCAAACTGCATGTTT TCTCATCAATAGAATTCCTACTGCTATCTTGCAAAAGGAGACACCATATTACAGGATGTATCACAACCATCCTTTTTATG AATCCTTGAGGGTATTTGGTTGTTTGTGCTACGTTTCTACATTACCCTCCACCCGGGACAAGCTCACTCCTCGTGCAAAG GCAGCAGTGTTCATGGGATATCCACAAGGTTATAAAGGGTACAAGGTGTATGATCTTGAGTCCAGAACCATGGTGATATC CATTGTTCCATTGCCTCCTCACAAGCATTCGATTGGGTATAAGTGGGTGTATAGAATCAAGTATAAATCTGATGGCACCA TAGAGAGATACAAAGCTCGTTTGGTGGCAAAGGGTTTTACACAACAGGCTGGTCTTGATTATATTGAAACATCTCACCAG TAGCAAAGCTAACAACAGTGAGATTGTTACTCAGCTTGGCAGCAATTCGAGGCTGGACTCTTGCTCAGTTAGATATTAAC AATGCTTTTTGGCACTTTACTAGAGGAAATCTATATGGATTTGCCCCTTGGTTATCATATTCAGAGGTCCACAATTAAGG GGGAGCAGGCAGCATCCAAGACAAAGCTAGTTTGTAAACTTCACAAGTCCATTTATGGCTTGAAACAAGCTTCTAGGCAA TGGTTTACAACATTTGCAAATGTCTTACTTCAAATTGGTTTCTCTCAATCTAAGTCTGATTATTCTCTTTTCACCAAAGG CACTGGATCCTCTTTTATTGCCCTCTTAGTGTATGTTGATAATATCATCATTGCTAGTGCAAACACTTCTCTGATCTCAT CACTAAAGAAGGCTCTTCAAGACAGTTTCAAGCTTAAGGATCTGGGCACTCTTCACTATTTTCTTGGCTTGGAAATCACA AGATCCAAAAAGGGCATTTTTCTGAATCAAAGGAAATACACTCTGTCTTTACTAGAAGACACTGGTTTTCTGGGATCCCA ACCTACGACACTTCCAATGCAACCTCACCTCAAGTTGAATTCCACAGATGGAGATCTTTTGCCTGATATTACTCAGTATC GGAGACTTGTTGGTAGGCTGCTCTACTTGACTTTGTCACGTCCTGATATCACCTTTTGTGTTCATAAGCTTAGCCAATTC TTATCCAAGCCAAGAACACCACACCTTGATGTAGTACATTACTTTCTGCGGTACCTGAAGGGCACACTAGGCCAAGGCAT TTTCTTATCTTCCACATCTTCATTGAAGCTTCATGCTTTTTCTGACGCTGACTGGGCCACTTGTCTCGACACACGCTGCT CCACAACAGGATACTATGTTTTTCTTGGTGATTCCCTTGTGTCCTGGAAATCTAAAAAACAGGGTACCGTGAGTAAATCC TCAGCTGAATCTGAGTATCGCGCTTTGGCAGCAGTAGCATCTGAACTTACCTGGTTGCATTACTTGCTGAATGATTTTCA AGTCCAAACTGGTTCTACTGCTGTCTATTGCGACAATCTAGCTGCTATTCATATAGCTTCTAACCCTCAATTTCATGAAC GCACAAAGCACATCGAACTCGATTGCCATTTTGTCAGAGAACAGGTTGAAGCGGGCCTATTACGACTGGTTTCAGTTCGC ACTCACCAACAACTCGCGGACATTTTCACTAAGGCTCTGCCATTACCCTCTTTTAGAAGTATATTAGGCAAGATGGGAAT TCTCAATATTTACATTCCATCTTGAGGGGGAGTAATACATGTAATTATACACGTGTGAGTTAAATTAAGCACGTGTTATG TGTTATTTAGATTCAGTTAGAGGTAGTTAGTGTTTAGTTACAATTAGTTACAGAGTTTGTTAGTGGTTTAGAGAGTTTGT TAGAGTTTTCTTATGCTCTCAGCTTCTGTATATAAAGAACTTTGATCAATGAATAGAATCACTGTTTCAGAAATTAACAA A
CDS sequence (LotjaGi3g1v0442500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCATCCATGGATGATTTCTCAGATCCATACTTTCTGCATCATTCTGATGGCCCAGGCTTGGTTCTGGTTTCACA ACCATTGACCGGTTCAAACTACAACACCTGGAGTCGATCTATGCTTGTTGCTCTCTCGGTGAAGAACAAGGTTTCCTTCA TCAATGGATCGTTGCCCTGTCCTGCTGCTTCCGATCCTAACTACCGTGCTTGGAATCGCGGTAACAATGTTGTGATTTCT TGGATCTTCAATTCTGTTTCCAAAGAAATCGCTGCCAGTATCATGTACTCTGGTACAGCACTGGAGATTTGGCAGGATTT GCGCGAGCGTTTTGCACAGAAAAATGGCCCGCGTGTGTTTCAGCTTCGCCGAGAATTGATGAGTCTTCATCAAGGATCTG ATTCGGTGAGCGTTTACTACACGAAATTGAAGACGATTTAG
Protein sequence (LotjaGi3g1v0442500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSSMDDFSDPYFLHHSDGPGLVLVSQPLTGSNYNTWSRSMLVALSVKNKVSFINGSLPCPAASDPNYRAWNRGNNVVIS WIFNSVSKEIAASIMYSGTALEIWQDLRERFAQKNGPRVFQLRRELMSLHQGSDSVSVYYTKLKTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 137 | 133 | 3.8E-57 | – | |
| PANTHER | 5 | 137 | 133 | 3.8E-57 | – | |
| Pfam | 15 | 62 | 48 | 2.7E-19 | ||
| Pfam | 80 | 146 | 67 | 4.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0442500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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