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The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.
We have found 208 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 5.692s to perform.
| Transcript | Name | Description | Chr | Start | End | Strand | Domain predictions | GO predictions |
|---|---|---|---|---|---|---|---|---|
| n.a. | Cellular nucleic acid-binding protein [Medicago truncatula] gi|357459751|ref|XP_003600156.1| | chr0 | 10404323 | 10405327 | + | – | ||
| n.a. | polyprotein [Glycine max] gi|27764548|gb|AAO23078.1| | chr0 | 28372744 | 28373354 | + | – | ||
| n.a. | Flavonol sulfotransferase-like protein [Medicago truncatula] gi|357515301|ref|XP_003627939.1| | chr0 | 34140288 | 34141143 | + | – | ||
| n.a. | Uncharacterized protein TCM_024883 [Theobroma cacao] gi|508717571|gb|EOY09468.1| | chr0 | 88810818 | 88812911 | - | – | ||
| n.a. | n.a. | chr0 | 99979448 | 99980587 | + | – | ||
| n.a. | Flavonol sulfotransferase-like protein [Medicago truncatula] gi|357515301|ref|XP_003627939.1| | chr0 | 109228903 | 109230850 | - | – | ||
| n.a. | At5g39185 [Arabidopsis thaliana] gi|50253554|gb|AAT71979.1| | chr0 | 113050151 | 113054850 | - | – | ||
| n.a. | retroelement pol polyprotein-like [Arabidopsis thaliana] gi|8843739|dbj|BAA97287.1| | chr0 | 145518542 | 145521165 | - | – | ||
| n.a. | polyprotein [Glycine max] gi|27764548|gb|AAO23078.1| | chr1 | 10649692 | 10651645 | + | – | ||
| n.a. | Ty1/copia-element polyprotein [Arabidopsis thaliana] gi|12322504|gb|AAG51258.1|AC025782_3 | chr1 | 10775163 | 10780320 | - | – | ||
| n.a. | polyprotein [Glycine max] gi|27764548|gb|AAO23078.1| | chr1 | 59582304 | 59583466 | + | – | ||
| n.a. | Gag-pro-like protein [Theobroma cacao] gi|508773866|gb|EOY21122.1| | chr2 | 5776181 | 5797894 | + | – | ||
| n.a. | retroelement pol polyprotein-like [Arabidopsis thaliana] gi|10177558|dbj|BAB10837.1| | chr2 | 19314392 | 19317274 | + | – | ||
| n.a. | F27F5.19 [Arabidopsis thaliana] gi|7767664|gb|AAF69161.1|AC007915_13 | chr2 | 31036127 | 31037428 | + | – | ||
| n.a. | retroelement pol polyprotein-like [Arabidopsis thaliana] gi|10177143|dbj|BAB10503.1| | chr2 | 42163397 | 42165847 | + | – | ||
| n.a. | retroelement pol polyprotein-like [Arabidopsis thaliana] gi|8843739|dbj|BAA97287.1| | chr4 | 13304708 | 13306235 | + | – | ||
| n.a. | F27F5.19 [Arabidopsis thaliana] gi|7767664|gb|AAF69161.1|AC007915_13 | chr6 | 16510727 | 16512134 | + | – | ||
| n.a. | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0031100 | LjG1.1_chr1 | 3997588 | 3999510 | - | – | ||
| n.a. | Hydrogenobyrinate a,c-diamide synthase; TAIR: AT1G13630.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q2JHS8|Y2931_SYNJB UPF0754 membrane protein CYB_2931; TrEMBL-Plants: tr|U5CUI2|U5CUI2_AMBTC Uncharacterized protein; Found in the gene: LotjaGi1g1v0096600_LC | LjG1.1_chr1 | 14655490 | 14656143 | + | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G20935.1 DUF3148 family protein; Swiss-Prot: sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog; TrEMBL-Plants: tr|A0A1B5Z9X4|A0A1B5Z9X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0111100_LC | LjG1.1_chr1 | 17313541 | 17326522 | + | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G14120.1 nuclear pore complex protein; Swiss-Prot: sp|Q8L748|NU107_ARATH Nuclear pore complex protein NUP107; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0140100_LC | LjG1.1_chr1 | 23008737 | 23010100 | - | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G47690.1 microtubule end binding protein EB1A; Swiss-Prot: sp|Q89AP5|DEGPL_BUCBP Probable periplasmic serine endoprotease DegP-like; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0164200 | LjG1.1_chr1 | 31004104 | 31007205 | - | – | ||
| n.a. | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q754R2|DDI1_ASHGO DNA damage-inducible protein 1; TrEMBL-Plants: tr|A0A1B5Z879|A0A1B5Z879_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0173400 | LjG1.1_chr1 | 33100395 | 33118404 | - | – | ||
| n.a. | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q754R2|DDI1_ASHGO DNA damage-inducible protein 1; TrEMBL-Plants: tr|A0A1B5Z879|A0A1B5Z879_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0173400 | LjG1.1_chr1 | 33100395 | 33124022 | - | – | ||
| n.a. | Gag-Pol polyprotein; TAIR: AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 33; Swiss-Prot: sp|P12450|GAG_HV2SB Gag polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi1g1v0189900_LC | LjG1.1_chr1 | 37256774 | 37258396 | + | – | ||
| n.a. | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0L9V4B0|A0A0L9V4B0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196000 | LjG1.1_chr1 | 38915643 | 38934702 | + | – | ||
| n.a. | Retrotransposon gag protein; TAIR: AT1G29030.1 Apoptosis inhibitory protein 5 (API5); Swiss-Prot: sp|B7KUA4|ATPA_METC4 ATP synthase subunit alpha; TrEMBL-Plants: tr|A0A1D6DKT5|A0A1D6DKT5_WHEAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0203600_LC | LjG1.1_chr1 | 43767546 | 43769098 | - | – | ||
| n.a. | Gag-Pol polyprotein; TAIR: AT3G43490.1 Zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi1g1v0204400_LC | LjG1.1_chr1 | 44073649 | 44077069 | - | – | ||
| n.a. | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT1G34070.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q92SW3|RBFA_RHIME Ribosome-binding factor A; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi1g1v0209100_LC | LjG1.1_chr1 | 45847208 | 45847564 | - | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G69550.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein kinase BUB1; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0213700_LC | LjG1.1_chr1 | 47112508 | 47113152 | + | – | ||
| n.a. | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT4G25434.1 nudix hydrolase homolog 10; Swiss-Prot: sp|Q5ZK62|ACAP2_CHICK Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi1g1v0221700_LC | LjG1.1_chr1 | 49245511 | 49246208 | + | – | ||
| n.a. | Gag-pro-like protein; TAIR: AT5G35460.1 membrane protein; Swiss-Prot: sp|Q8BV57|SRCRL_MOUSE Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D; TrEMBL-Plants: tr|A0A061E6J4|A0A061E6J4_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0225100 | LjG1.1_chr1 | 51771788 | 51773993 | + | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|P17757|POL_HV2D1 Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi1g1v0233500_LC | LjG1.1_chr1 | 54831123 | 54836797 | + | – | ||
| n.a. | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z9W3|A0A1B5Z9W3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0247600_LC | LjG1.1_chr1 | 59478779 | 59479406 | + | – | ||
| n.a. | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|Q8WWN8|ARAP3_HUMAN Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3; TrEMBL-Plants: tr|A0A151RT08|A0A151RT08_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0252800_LC | LjG1.1_chr1 | 60674873 | 60675472 | - | – | ||
| n.a. | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P19558|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0253100 | LjG1.1_chr1 | 60697921 | 60702178 | + | – | ||
| n.a. | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0256300 | LjG1.1_chr1 | 62044002 | 62046557 | + | – | ||
| n.a. | Transposable element protein, putative, Retrotrans_gag; TAIR: AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q7SY75|NCALD_XENLA Neurocalcin-delta; TrEMBL-Plants: tr|W9RRR5|W9RRR5_9ROSA Uncharacterized protein; Found in the gene: LotjaGi1g1v0261400_LC | LjG1.1_chr1 | 64015920 | 64016245 | - | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3; TrEMBL-Plants: tr|A0A1B5Z9X4|A0A1B5Z9X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0262500_LC | LjG1.1_chr1 | 64246258 | 64247371 | - | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A1B5Z8G7|A0A1B5Z8G7_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0281700_LC | LjG1.1_chr1 | 68633913 | 68641871 | + | – | ||
| n.a. | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q06AK6|TFP11_PIG Tuftelin-interacting protein 11; TrEMBL-Plants: tr|Q2HU07|Q2HU07_MEDTR Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi1g1v0297500 | LjG1.1_chr1 | 72085968 | 72091857 | - | – | ||
| n.a. | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q06AK6|TFP11_PIG Tuftelin-interacting protein 11; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0297500 | LjG1.1_chr1 | 72089681 | 72091856 | - | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G26870.1 non-specific phospholipase C2; Swiss-Prot: sp|Q8XDG1|MUKE_ECO57 Chromosome partition protein MukE; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0303500 | LjG1.1_chr1 | 74075491 | 74081187 | + | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi1g1v0311100_LC | LjG1.1_chr1 | 75472211 | 75486513 | + | – | ||
| n.a. | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q4WGS4|DDI1_ASPFU DNA damage-inducible protein 1; TrEMBL-Plants: tr|A0A151R7N2|A0A151R7N2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0337000 | LjG1.1_chr1 | 79718852 | 79743612 | - | – | ||
| n.a. | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q4WGS4|DDI1_ASPFU DNA damage-inducible protein 1; TrEMBL-Plants: tr|A0A151R7N2|A0A151R7N2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0337000 | LjG1.1_chr1 | 79719370 | 79727337 | - | – | ||
| n.a. | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|P42591|YGJJ_ECOLI Uncharacterized protein YgjJ; TrEMBL-Plants: tr|A0A1J7G409|A0A1J7G409_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0337300_LC | LjG1.1_chr1 | 79768872 | 79769286 | + | – | ||
| n.a. | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0L9V4B0|A0A0L9V4B0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0361200_LC | LjG1.1_chr1 | 83599447 | 83602503 | - | – | ||
| n.a. | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G14120.1 nuclear pore complex protein; Swiss-Prot: sp|Q9NRU3|CNNM1_HUMAN Metal transporter CNNM1; TrEMBL-Plants: tr|Q69F85|Q69F85_PHAVU Gag-pol polyprotein; Found in the gene: LotjaGi1g1v0369800_LC | LjG1.1_chr1 | 84799357 | 84801138 | - | – | ||
| n.a. | Gag-Pol polyprotein; TAIR: AT4G36020.1 cold shock domain protein 1; Swiss-Prot: sp|P53849|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi1g1v0388800_LC | LjG1.1_chr1 | 87245595 | 87248647 | + | – |