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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029472
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 80 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.127s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0161659.1
n.a. retroelement pol polyprotein-like [Arabidopsis thaliana] gi|9758329|dbj|BAB08885.1| chr0 76071162 76071629 -
2 domain predictions
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Lj0g3v0165099.1
n.a. F27F5.19 [Arabidopsis thaliana] gi|7767664|gb|AAF69161.1|AC007915_13 chr0 78309073 78310539 +
2 domain predictions
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Lj0g3v0170709.1
n.a. Beta-galactosidase [Medicago truncatula] gi|357453875|ref|XP_003597218.1| chr0 81677423 81680020 +
2 domain predictions
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Lj0g3v0204879.1
n.a. Uncharacterized protein TCM_032521 [Theobroma cacao] gi|508721954|gb|EOY13851.1| chr0 101806917 101807201 +
2 domain predictions
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Lj0g3v0216479.1
n.a. Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] gi|124359649|gb|ABD32334.2| chr0 109939248 109939490 +
2 domain predictions
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Lj0g3v0220649.1
n.a. At5g39185 [Arabidopsis thaliana] gi|50253554|gb|AAT71979.1| chr0 113050151 113054850 -
2 domain predictions
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Lj0g3v0231059.1
n.a. contains similarity to reverse transcriptases (Pfam; rvt.hmm, score: 11.19) [Arabidopsis thaliana] gi|3513747|gb|AAC33963.1| chr0 119778401 119778733 -
2 domain predictions
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Lj0g3v0259169.1
n.a. PREDICTED: cucumisin-like [Vitis vinifera] gi|359478591|ref|XP_002280329.2| chr0 134655683 134656002 -
2 domain predictions
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Lj0g3v0272509.1
n.a. n.a. chr0 141206151 141207471 +
2 domain predictions
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Lj0g3v0280629.1
n.a. retroelement pol polyprotein-like [Arabidopsis thaliana] gi|8843739|dbj|BAA97287.1| chr0 145518542 145521165 -
2 domain predictions
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Lj0g3v0316339.1
n.a. Uncharacterized protein TCM_019201 [Theobroma cacao] gi|508712071|gb|EOY03968.1| chr0 165189822 165190774 -
2 domain predictions
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Lj0g3v0357809.1
n.a. PREDICTED: protein ALWAYS EARLY 2-like [Vitis vinifera] gi|359487806|ref|XP_003633652.1| chr0 188353503 188354286 -
2 domain predictions
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Lj0g3v0362299.1
n.a. Ty1/copia-element polyprotein [Arabidopsis thaliana] gi|12322504|gb|AAG51258.1|AC025782_3 chr0 191028432 191030023 +
2 domain predictions
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Lj1g3v0488870.1
n.a. Uncharacterized protein TCM_032521 [Theobroma cacao] gi|508721954|gb|EOY13851.1| chr1 6347152 6350477 +
2 domain predictions
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Lj1g3v0828100.1
n.a. Ty1/copia-element polyprotein [Arabidopsis thaliana] gi|12322504|gb|AAG51258.1|AC025782_3 chr1 10775163 10780320 -
2 domain predictions
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Lj2g3v1019670.1
n.a. Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao] gi|508718075|gb|EOY09972.1| chr2 15730370 15730980 -
2 domain predictions
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Lj2g3v2029950.1
n.a. F27F5.19 [Arabidopsis thaliana] gi|7767664|gb|AAF69161.1|AC007915_13 chr2 31036127 31037428 +
2 domain predictions
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Lj2g3v2843520.1
n.a. PREDICTED: cucumisin-like [Vitis vinifera] gi|359478591|ref|XP_002280329.2| chr2 37100135 37100371 +
2 domain predictions
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Lj3g3v1789100.1
n.a. F27F5.19 [Arabidopsis thaliana] gi|7767664|gb|AAF69161.1|AC007915_13 chr3 22794998 22796526 +
2 domain predictions
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Lj3g3v3617790.1
n.a. retroelement pol polyprotein-like [Arabidopsis thaliana] gi|9758329|dbj|BAB08885.1| chr3 43717920 43718387 -
2 domain predictions
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Lj4g3v2081450.1
n.a. PREDICTED: protein ALWAYS EARLY 2-like [Vitis vinifera] gi|359487806|ref|XP_003633652.1| chr4 28631668 28631979 +
2 domain predictions
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Lj5g3v1118380.1
n.a. T7N9.5 [Arabidopsis thaliana] gi|8778880|gb|AAF79879.1|AC000348_32 chr5 17860637 17861017 +
2 domain predictions
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Lj6g3v0001250.1
n.a. PREDICTED: cucumisin-like [Vitis vinifera] gi|359478591|ref|XP_002280329.2| chr6 106587 106916 -
2 domain predictions
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Lj6g3v1382380.1
n.a. F27F5.19 [Arabidopsis thaliana] gi|7767664|gb|AAF69161.1|AC007915_13 chr6 16510727 16512134 +
2 domain predictions
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LotjaGi1g1v0031100.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0031100 LjG1.1_chr1 3997588 3999510 -
2 domain predictions
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LotjaGi1g1v0201800.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151QNL0|A0A151QNL0_CAJCA Putative transposon Ty5-1 protein YCL075W family; Found in the gene: LotjaGi1g1v0201800 LjG1.1_chr1 42789833 42817795 -
2 domain predictions
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LotjaGi1g1v0201800.2
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151QNL0|A0A151QNL0_CAJCA Putative transposon Ty5-1 protein YCL075W family; Found in the gene: LotjaGi1g1v0201800 LjG1.1_chr1 42793997 42817676 -
2 domain predictions
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LotjaGi1g1v0253100.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P19558|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0253100 LjG1.1_chr1 60697921 60702178 +
2 domain predictions
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LotjaGi1g1v0256300.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0256300 LjG1.1_chr1 62044002 62046557 +
2 domain predictions
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LotjaGi1g1v0297500.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q06AK6|TFP11_PIG Tuftelin-interacting protein 11; TrEMBL-Plants: tr|Q2HU07|Q2HU07_MEDTR Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi1g1v0297500 LjG1.1_chr1 72085968 72091857 -
2 domain predictions
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LotjaGi1g1v0297500.2
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q06AK6|TFP11_PIG Tuftelin-interacting protein 11; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0297500 LjG1.1_chr1 72089681 72091856 -
2 domain predictions
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LotjaGi1g1v0512600.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A8FL10|DNLJ_CAMJ8 DNA ligase; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0512600 LjG1.1_chr1 103428288 103430426 +
2 domain predictions
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LotjaGi1g1v0562200.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q05142|COAT_NVMV Coat protein; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0562200 LjG1.1_chr1 109435639 109436632 +
2 domain predictions
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LotjaGi1g1v0655800.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655800 LjG1.1_chr1 121541578 121543729 -
2 domain predictions
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LotjaGi1g1v0674500.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0674500 LjG1.1_chr1 124113602 124115621 +
2 domain predictions
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LotjaGi2g1v0091300_LC.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q8RWJ7|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr|A0A151ST33|A0A151ST33_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0091300_LC LjG1.1_chr2 27472501 27474611 -
2 domain predictions
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LotjaGi2g1v0098400.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q8LPK0|AB8A_ARATH ABC transporter A family member 8; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0098400 LjG1.1_chr2 32182886 32186353 -
2 domain predictions
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LotjaGi2g1v0136000_LC.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P04146|COPIA_DROME Copia protein; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0136000_LC LjG1.1_chr2 49900116 49901639 -
2 domain predictions
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LotjaGi3g1v0067100.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151RJ01|A0A151RJ01_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0067100 LjG1.1_chr3 7267438 7273208 +
2 domain predictions
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LotjaGi3g1v0106900_LC.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q1GRI1|MNMA_SPHAL tRNA-specific 2-thiouridylase MnmA; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0106900_LC LjG1.1_chr3 13207339 13207950 +
2 domain predictions
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LotjaGi3g1v0117200.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q9C0B0|UNK_HUMAN RING finger protein unkempt homolog; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0117200 LjG1.1_chr3 14360160 14366437 -
2 domain predictions
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LotjaGi3g1v0133900.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A6U1Q5|EBH_STAA2 Extracellular matrix-binding protein ebh; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0133900 LjG1.1_chr3 17011531 17013353 +
2 domain predictions
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LotjaGi3g1v0168800.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P19558|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0168800 LjG1.1_chr3 23035804 23040599 -
2 domain predictions
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LotjaGi3g1v0273600.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0273600 LjG1.1_chr3 53396086 53408780 +
2 domain predictions
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LotjaGi3g1v0273600.2
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A0A0C4DH33|HV124_HUMAN Immunoglobulin heavy variable 1-24; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0273600 LjG1.1_chr3 53396265 53405984 +
2 domain predictions
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LotjaGi3g1v0277800.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q864S8|BRCA2_FELCA Breast cancer type 2 susceptibility protein homolog; TrEMBL-Plants: tr|A0A151QSM9|A0A151QSM9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0277800 LjG1.1_chr3 55127932 55132828 -
2 domain predictions
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LotjaGi3g1v0353500.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|B9W9Z5|LCL3_CANDC Probable endonuclease LCL3; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0353500 LjG1.1_chr3 73417735 73422536 +
2 domain predictions
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LotjaGi3g1v0357300_LC.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp|P04146|COPIA_DROME Copia protein; TrEMBL-Plants: tr|A0A151SIC5|A0A151SIC5_CAJCA Copia protein; Found in the gene: LotjaGi3g1v0357300_LC LjG1.1_chr3 73936223 73937808 -
2 domain predictions
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LotjaGi3g1v0357400.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A8FL10|DNLJ_CAMJ8 DNA ligase; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0357400 LjG1.1_chr3 73939417 73941246 -
2 domain predictions
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LotjaGi3g1v0386800.1
n.a. Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q6BUT3|NST1_DEBHA Stress response protein NST1; TrEMBL-Plants: tr|A0A151RE46|A0A151RE46_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0386800 LjG1.1_chr3 78248266 78250391 +
2 domain predictions
 –