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IPR005162

Source: InterPro

Description

IPR005162 is a Retrotransposon gag domain.

<p>Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins, including Retrotransposon-derived protein PEG10 from Mus musculus, which binds its own mRNA and self-assembles into virion-like capsids [[cite:PUB00101193], [cite:PUB00101192]]. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved [[cite:PUB00008354]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 208

Transcript Name Description Predicted domains Domain count
Lj0g3v0032889.1
– Cellular nucleic acid-binding protein [Medicago truncatula] gi|357459751|ref|XP_003600156.1|
Domains
15
Lj0g3v0074919.1
– Polyprotein [Glycine max] gi|27764548|gb|AAO23078.1|
Domains
5
Lj0g3v0085339.1
– Flavonol sulfotransferase-like protein [Medicago truncatula] gi|357515301|ref|XP_003627939.1|
Domains
6
Lj0g3v0181889.1
– Uncharacterized protein TCM_024883 [Theobroma cacao] gi|508717571|gb|EOY09468.1|
Domains
3
Lj0g3v0202029.1
–
Domains
4
Lj0g3v0215549.1
– Flavonol sulfotransferase-like protein [Medicago truncatula] gi|357515301|ref|XP_003627939.1|
Domains
8
Lj0g3v0220649.1
– At5g39185 [Arabidopsis thaliana] gi|50253554|gb|AAT71979.1|
Domains
7
Lj0g3v0280629.1
– Retroelement pol polyprotein-like [Arabidopsis thaliana] gi|8843739|dbj|BAA97287.1|
Domains
7
Lj1g3v0811870.1
– Polyprotein [Glycine max] gi|27764548|gb|AAO23078.1|
Domains
10
Lj1g3v0828100.1
– Ty1/copia-element polyprotein [Arabidopsis thaliana] gi|12322504|gb|AAG51258.1|AC025782_3
Domains
9
Lj1g3v4916380.1
– Polyprotein [Glycine max] gi|27764548|gb|AAO23078.1|
Domains
5
Lj2g3v0360350.1
– Gag-pro-like protein [Theobroma cacao] gi|508773866|gb|EOY21122.1|
Domains
3
Lj2g3v1203350.1
– Retroelement pol polyprotein-like [Arabidopsis thaliana] gi|10177558|dbj|BAB10837.1|
Domains
15
Lj2g3v2029950.1
– F27F5.19 [Arabidopsis thaliana] gi|7767664|gb|AAF69161.1|AC007915_13
Domains
6
Lj2g3v3323890.1
– Retroelement pol polyprotein-like [Arabidopsis thaliana] gi|10177143|dbj|BAB10503.1|
Domains
20
Lj4g3v0877820.1
– Retroelement pol polyprotein-like [Arabidopsis thaliana] gi|8843739|dbj|BAA97287.1|
Domains
7
Lj6g3v1382380.1
– F27F5.19 [Arabidopsis thaliana] gi|7767664|gb|AAF69161.1|AC007915_13
Domains
7
LotjaGi1g1v0031100.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0031100
Domains
8
LotjaGi1g1v0096600_LC.1
– Hydrogenobyrinate a,c-diamide synthase; TAIR: AT1G13630.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q2JHS8|Y2931_SYNJB UPF0754 membrane protein CYB_2931; TrEMBL-Plants: tr|U5CUI2|U5CUI2_AMBTC Uncharacterized protein; Found in the gene: LotjaGi1g1v0096600_LC
Domains
5
LotjaGi1g1v0111100_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G20935.1 DUF3148 family protein; Swiss-Prot: sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog; TrEMBL-Plants: tr|A0A1B5Z9X4|A0A1B5Z9X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0111100_LC
Domains
4
LotjaGi1g1v0140100_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G14120.1 nuclear pore complex protein; Swiss-Prot: sp|Q8L748|NU107_ARATH Nuclear pore complex protein NUP107; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0140100_LC
Domains
3
LotjaGi1g1v0164200.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G47690.1 microtubule end binding protein EB1A; Swiss-Prot: sp|Q89AP5|DEGPL_BUCBP Probable periplasmic serine endoprotease DegP-like; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0164200
Domains
4
LotjaGi1g1v0173400.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q754R2|DDI1_ASHGO DNA damage-inducible protein 1; TrEMBL-Plants: tr|A0A1B5Z879|A0A1B5Z879_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0173400
Domains
10
LotjaGi1g1v0173400.2
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q754R2|DDI1_ASHGO DNA damage-inducible protein 1; TrEMBL-Plants: tr|A0A1B5Z879|A0A1B5Z879_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0173400
Domains
10
LotjaGi1g1v0189900_LC.1
– Gag-Pol polyprotein; TAIR: AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 33; Swiss-Prot: sp|P12450|GAG_HV2SB Gag polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi1g1v0189900_LC
Domains
12
LotjaGi1g1v0196000.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0L9V4B0|A0A0L9V4B0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196000
Domains
13
LotjaGi1g1v0203600_LC.1
– Retrotransposon gag protein; TAIR: AT1G29030.1 Apoptosis inhibitory protein 5 (API5); Swiss-Prot: sp|B7KUA4|ATPA_METC4 ATP synthase subunit alpha; TrEMBL-Plants: tr|A0A1D6DKT5|A0A1D6DKT5_WHEAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0203600_LC
Domains
6
LotjaGi1g1v0204400_LC.1
– Gag-Pol polyprotein; TAIR: AT3G43490.1 Zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi1g1v0204400_LC
Domains
17
LotjaGi1g1v0209100_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT1G34070.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q92SW3|RBFA_RHIME Ribosome-binding factor A; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi1g1v0209100_LC
Domains
4
LotjaGi1g1v0213700_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G69550.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein kinase BUB1; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0213700_LC
Domains
4
LotjaGi1g1v0221700_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT4G25434.1 nudix hydrolase homolog 10; Swiss-Prot: sp|Q5ZK62|ACAP2_CHICK Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi1g1v0221700_LC
Domains
5
LotjaGi1g1v0225100.1
– Gag-pro-like protein; TAIR: AT5G35460.1 membrane protein; Swiss-Prot: sp|Q8BV57|SRCRL_MOUSE Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D; TrEMBL-Plants: tr|A0A061E6J4|A0A061E6J4_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0225100
Domains
4
LotjaGi1g1v0233500_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|P17757|POL_HV2D1 Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi1g1v0233500_LC
Domains
12
LotjaGi1g1v0247600_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z9W3|A0A1B5Z9W3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0247600_LC
Domains
6
LotjaGi1g1v0252800_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|Q8WWN8|ARAP3_HUMAN Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3; TrEMBL-Plants: tr|A0A151RT08|A0A151RT08_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0252800_LC
Domains
5
LotjaGi1g1v0253100.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P19558|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0253100
Domains
7
LotjaGi1g1v0256300.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0256300
Domains
7
LotjaGi1g1v0261400_LC.1
– Transposable element protein, putative, Retrotrans_gag; TAIR: AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q7SY75|NCALD_XENLA Neurocalcin-delta; TrEMBL-Plants: tr|W9RRR5|W9RRR5_9ROSA Uncharacterized protein; Found in the gene: LotjaGi1g1v0261400_LC
Domains
2
LotjaGi1g1v0262500_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3; TrEMBL-Plants: tr|A0A1B5Z9X4|A0A1B5Z9X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0262500_LC
Domains
3
LotjaGi1g1v0281700_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A1B5Z8G7|A0A1B5Z8G7_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0281700_LC
Domains
45
LotjaGi1g1v0297500.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q06AK6|TFP11_PIG Tuftelin-interacting protein 11; TrEMBL-Plants: tr|Q2HU07|Q2HU07_MEDTR Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi1g1v0297500
Domains
6
LotjaGi1g1v0297500.2
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q06AK6|TFP11_PIG Tuftelin-interacting protein 11; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0297500
Domains
6
LotjaGi1g1v0303500.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G26870.1 non-specific phospholipase C2; Swiss-Prot: sp|Q8XDG1|MUKE_ECO57 Chromosome partition protein MukE; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0303500
Domains
5
LotjaGi1g1v0311100_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi1g1v0311100_LC
Domains
42
LotjaGi1g1v0337000.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q4WGS4|DDI1_ASPFU DNA damage-inducible protein 1; TrEMBL-Plants: tr|A0A151R7N2|A0A151R7N2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0337000
Domains
11
LotjaGi1g1v0337000.2
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q4WGS4|DDI1_ASPFU DNA damage-inducible protein 1; TrEMBL-Plants: tr|A0A151R7N2|A0A151R7N2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0337000
Domains
11
LotjaGi1g1v0337300_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|P42591|YGJJ_ECOLI Uncharacterized protein YgjJ; TrEMBL-Plants: tr|A0A1J7G409|A0A1J7G409_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0337300_LC
Domains
4
LotjaGi1g1v0361200_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0L9V4B0|A0A0L9V4B0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0361200_LC
Domains
12
LotjaGi1g1v0369800_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G14120.1 nuclear pore complex protein; Swiss-Prot: sp|Q9NRU3|CNNM1_HUMAN Metal transporter CNNM1; TrEMBL-Plants: tr|Q69F85|Q69F85_PHAVU Gag-pol polyprotein; Found in the gene: LotjaGi1g1v0369800_LC
Domains
5
LotjaGi1g1v0388800_LC.1
– Gag-Pol polyprotein; TAIR: AT4G36020.1 cold shock domain protein 1; Swiss-Prot: sp|P53849|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi1g1v0388800_LC
Domains
17
LotjaGi1g1v0512600.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A8FL10|DNLJ_CAMJ8 DNA ligase; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0512600
Domains
11
LotjaGi1g1v0532800_LC.1
– Gag-Pol polyprotein; TAIR: AT2G15180.1 Zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi1g1v0532800_LC
Domains
19
LotjaGi1g1v0562200.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q05142|COAT_NVMV Coat protein; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0562200
Domains
9
LotjaGi1g1v0586700.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|A8FFW5|LEU11_BACP2 2-isopropylmalate synthase 1; TrEMBL-Plants: tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein; Found in the gene: LotjaGi1g1v0586700
Domains
4
LotjaGi1g1v0622800_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi1g1v0622800_LC
Domains
37
LotjaGi1g1v0655800.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655800
Domains
7
LotjaGi1g1v0678300_LC.1
– Transposable element protein, putative, Retrotrans_gag; TAIR: AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q03R43|SYA_LACBA Alanine--tRNA ligase; TrEMBL-Plants: tr|A0A151T4H0|A0A151T4H0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0678300_LC
Domains
5
LotjaGi1g1v0710700_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G14120.1 nuclear pore complex protein; Swiss-Prot: sp|Q8L748|NU107_ARATH Nuclear pore complex protein NUP107; TrEMBL-Plants: tr|A0A151RLL6|A0A151RLL6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0710700_LC
Domains
3
LotjaGi2g1v0013600_LC.1
– Gag-Pol polyprotein; TAIR: AT4G36020.1 cold shock domain protein 1; Swiss-Prot: sp|P53849|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi2g1v0013600_LC
Domains
21
LotjaGi2g1v0016800_LC.1
– Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr|A0A0L9V4Z2|A0A0L9V4Z2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0016800_LC
Domains
24
LotjaGi2g1v0016800_LC.2
– Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr|A0A0L9V4Z2|A0A0L9V4Z2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0016800_LC
Domains
24
LotjaGi2g1v0020100_LC.1
– Gag-Pol polyprotein; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P53849|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi2g1v0020100_LC
Domains
16
LotjaGi2g1v0065000.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|Q7Z4H8|KDEL2_HUMAN KDEL motif-containing protein 2; TrEMBL-Plants: tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0065000
Domains
6
LotjaGi2g1v0091300_LC.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q8RWJ7|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr|A0A151ST33|A0A151ST33_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0091300_LC
Domains
7
LotjaGi2g1v0098400.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q8LPK0|AB8A_ARATH ABC transporter A family member 8; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0098400
Domains
7
LotjaGi2g1v0101600_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G23080.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal; TrEMBL-Plants: tr|A0A1B5Z9X4|A0A1B5Z9X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi2g1v0101600_LC
Domains
4
LotjaGi2g1v0102700_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G05790.1 lon protease 4; Swiss-Prot: sp|Q9M9L7|LONM4_ARATH Lon protease homolog 4, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0102700_LC
Domains
3
LotjaGi2g1v0106400_LC.1
– Gag-Pol polyprotein; TAIR: AT4G36020.1 cold shock domain protein 1; Swiss-Prot: sp|P53849|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi2g1v0106400_LC
Domains
17
LotjaGi2g1v0106400_LC.2
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi2g1v0106400_LC
Domains
32
LotjaGi2g1v0106400_LC.3
– Gag-Pol polyprotein; TAIR: AT4G36020.1 cold shock domain protein 1; Swiss-Prot: sp|P53849|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi2g1v0106400_LC
Domains
17
LotjaGi2g1v0112600_LC.1
– Gag-Pol polyprotein; TAIR: AT3G43590.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein; TrEMBL-Plants: tr|A0A1B5Z7X4|A0A1B5Z7X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi2g1v0112600_LC
Domains
12
LotjaGi2g1v0113200_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0L9V4A1|A0A0L9V4A1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0113200_LC
Domains
37
LotjaGi2g1v0116300_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi2g1v0116300_LC
Domains
43
LotjaGi2g1v0121300_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q55FT4|TSUA_DICDI Probable serine/threonine-protein kinase tsuA; TrEMBL-Plants: tr|A0A151UDX0|A0A151UDX0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0121300_LC
Domains
4
LotjaGi2g1v0136000_LC.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P04146|COPIA_DROME Copia protein; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0136000_LC
Domains
12
LotjaGi2g1v0140200_LC.1
– Gag-pro-like protein; TAIR: AT4G01180.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9JWT4|SYE_NEIMA Glutamate--tRNA ligase; TrEMBL-Plants: tr|A0A061FW77|A0A061FW77_THECC Gag-pro-like protein; Found in the gene: LotjaGi2g1v0140200_LC
Domains
3
LotjaGi2g1v0149600.1
– Gag-pro-like protein; TAIR: AT5G53990.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q7LC44|ARC_HUMAN Activity-regulated cytoskeleton-associated protein; TrEMBL-Plants: tr|A0A0L9T5V5|A0A0L9T5V5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0149600
Domains
5
LotjaGi2g1v0151900_LC.1
– Transposon protein, putative, unclassified; TAIR: AT4G31570.1 nucleoporin; Swiss-Prot: sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0151900_LC
Domains
4
LotjaGi2g1v0187700_LC.1
– Transposable element protein, putative, Retrotrans_gag; TAIR: AT4G31920.1 response regulator 10; Swiss-Prot: sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2; TrEMBL-Plants: tr|U5CUI2|U5CUI2_AMBTC Uncharacterized protein; Found in the gene: LotjaGi2g1v0187700_LC
Domains
4
LotjaGi2g1v0232300_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q8L748|NU107_ARATH Nuclear pore complex protein NUP107; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0232300_LC
Domains
4
LotjaGi2g1v0269800_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0269800_LC
Domains
3
LotjaGi2g1v0318500_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|B3PWI5|HIS7_RHIE6 Imidazoleglycerol-phosphate dehydratase; TrEMBL-Plants: tr|A0A1J7G409|A0A1J7G409_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318500_LC
Domains
6
LotjaGi2g1v0343500_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z7G4|A0A1B5Z7G4_TRISU Uncharacterized protein; Found in the gene: LotjaGi2g1v0343500_LC
Domains
6
LotjaGi3g1v0067100.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151RJ01|A0A151RJ01_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0067100
Domains
23
LotjaGi3g1v0071300.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|Q94521|DNAT_DROME Dopamine N-acetyltransferase; TrEMBL-Plants: tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0071300
Domains
5
LotjaGi3g1v0071300.2
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|Q94521|DNAT_DROME Dopamine N-acetyltransferase; TrEMBL-Plants: tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0071300
Domains
5
LotjaGi3g1v0117200.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q9C0B0|UNK_HUMAN RING finger protein unkempt homolog; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0117200
Domains
6
LotjaGi3g1v0133900.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A6U1Q5|EBH_STAA2 Extracellular matrix-binding protein ebh; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0133900
Domains
6
LotjaGi3g1v0134300.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A151RSW7|A0A151RSW7_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0134300
Domains
7
LotjaGi3g1v0148900.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q53RT3|APRV1_HUMAN Retroviral-like aspartic protease 1; TrEMBL-Plants: tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0148900
Domains
11
LotjaGi3g1v0167800_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0167800_LC
Domains
39
LotjaGi3g1v0168800.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P19558|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0168800
Domains
7
LotjaGi3g1v0217200_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z7G4|A0A1B5Z7G4_TRISU Uncharacterized protein; Found in the gene: LotjaGi3g1v0217200_LC
Domains
6
LotjaGi3g1v0219900_LC.1
– Retrotransposon protein, putative, unclassified; TAIR: AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q69Z23|DYH17_MOUSE Dynein heavy chain 17, axonemal; TrEMBL-Plants: tr|A0A151QUZ4|A0A151QUZ4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0219900_LC
Domains
3
LotjaGi3g1v0258300_LC.1
– Gag-Pol polyprotein; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P53849|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi3g1v0258300_LC
Domains
17
LotjaGi3g1v0260200_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G60490.1 vacuolar protein sorting 34; TrEMBL-Plants: tr|A0A151QLY1|A0A151QLY1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0260200_LC
Domains
2
LotjaGi3g1v0264200.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT5G16650.2 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating protein; TrEMBL-Plants: tr|A0A151QMT5|A0A151QMT5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0264200
Domains
4
LotjaGi3g1v0264400.1
– Gag-Pol polyprotein; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q1A249|POL_SIVEK Gag-Pol polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi3g1v0264400
Domains
12
LotjaGi3g1v0269700.1
– Retrotransposon protein, putative, unclassified; TAIR: AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151TV51|A0A151TV51_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0269700
Domains
8
LotjaGi3g1v0273600.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0273600
Domains
6
LotjaGi3g1v0273600.2
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A0A0C4DH33|HV124_HUMAN Immunoglobulin heavy variable 1-24; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0273600
Domains
6
LotjaGi3g1v0306000.1
– Transposable element protein, putative, Retrotrans_gag; TAIR: AT1G52730.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A3DBQ1|TPIS_CLOTH Triosephosphate isomerase; TrEMBL-Plants: tr|A0A151R0D0|A0A151R0D0_CAJCA Copia protein; Found in the gene: LotjaGi3g1v0306000
Domains
4
LotjaGi3g1v0306000.2
– Transposable element protein, putative, Retrotrans_gag; TAIR: AT1G52730.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A3DBQ1|TPIS_CLOTH Triosephosphate isomerase; TrEMBL-Plants: tr|A0A151R0D0|A0A151R0D0_CAJCA Copia protein; Found in the gene: LotjaGi3g1v0306000
Domains
4
LotjaGi3g1v0306000.3
– Transposable element protein, putative, Retrotrans_gag; TAIR: AT1G52730.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A3DBQ1|TPIS_CLOTH Triosephosphate isomerase; TrEMBL-Plants: tr|A0A151R0D0|A0A151R0D0_CAJCA Copia protein; Found in the gene: LotjaGi3g1v0306000
Domains
4
LotjaGi3g1v0306700_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0306700_LC
Domains
32
LotjaGi3g1v0306900_LC.1
– Gag-Pol polyprotein; TAIR: AT3G43490.1 Zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi3g1v0306900_LC
Domains
12
LotjaGi3g1v0307200_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0307200_LC
Domains
43
LotjaGi3g1v0307200_LC.2
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0307200_LC
Domains
43
LotjaGi3g1v0307200_LC.3
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0307200_LC
Domains
43
LotjaGi3g1v0307200_LC.4
– Gag-Pol polyprotein; TAIR: AT1G75560.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|O91080|POL_HV1YF Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151RID1|A0A151RID1_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0307200_LC
Domains
13
LotjaGi3g1v0328300_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z7G4|A0A1B5Z7G4_TRISU Uncharacterized protein; Found in the gene: LotjaGi3g1v0328300_LC
Domains
6
LotjaGi3g1v0353500.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|B9W9Z5|LCL3_CANDC Probable endonuclease LCL3; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0353500
Domains
7
LotjaGi3g1v0357400.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A8FL10|DNLJ_CAMJ8 DNA ligase; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0357400
Domains
11
LotjaGi3g1v0365900_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z7G4|A0A1B5Z7G4_TRISU Uncharacterized protein; Found in the gene: LotjaGi3g1v0365900_LC
Domains
6
LotjaGi3g1v0377500_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|Q8CDJ3|BAKOR_MOUSE Beclin 1-associated autophagy-related key regulator; TrEMBL-Plants: tr|B5U9W1|B5U9W1_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0377500_LC
Domains
4
LotjaGi3g1v0442500.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q2IJI0|ACEK_ANADE Isocitrate dehydrogenase kinase/phosphatase; TrEMBL-Plants: tr|A0A151RIX3|A0A151RIX3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0442500
Domains
6
LotjaGi3g1v0442500.2
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q2IJI0|ACEK_ANADE Isocitrate dehydrogenase kinase/phosphatase; TrEMBL-Plants: tr|A0A151RIX3|A0A151RIX3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0442500
Domains
6
LotjaGi4g1v0033100_LC.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P04146|COPIA_DROME Copia protein; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0033100_LC
Domains
11
LotjaGi4g1v0073000_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z7G4|A0A1B5Z7G4_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0073000_LC
Domains
5
LotjaGi4g1v0105300_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G10400.1 RNA recognition motif and CCHC-type zinc finger domains containing protein; Swiss-Prot: sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1; TrEMBL-Plants: tr|A0A1B5Z9J1|A0A1B5Z9J1_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0105300_LC
Domains
12
LotjaGi4g1v0112300.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q4J8F0|ARLY_SULAC Argininosuccinate lyase; TrEMBL-Plants: tr|A0A151SEJ5|A0A151SEJ5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0112300
Domains
7
LotjaGi4g1v0124100_LC.1
– Gag polyprotein; TAIR: AT3G55340.1 phragmoplastin interacting protein 1; Swiss-Prot: sp|P12502|POL_SIVS4 Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi4g1v0124100_LC
Domains
12
LotjaGi4g1v0125300_LC.1
– Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi4g1v0125300_LC
Domains
21
LotjaGi4g1v0131600.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q3UPR7|TM102_MOUSE Transmembrane protein 102; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131600
Domains
6
LotjaGi4g1v0141100_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G57570.2 ARM repeat superfamily protein; Swiss-Prot: sp|A1CNW8|SSH4_ASPCL Protein ssh4; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi4g1v0141100_LC
Domains
5
LotjaGi4g1v0145000_LC.1
– Gag-Pol polyprotein; TAIR: AT3G43590.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4; TrEMBL-Plants: tr|A0A1B5Z7X4|A0A1B5Z7X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0145000_LC
Domains
12
LotjaGi4g1v0149800_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P47170|IML1_YEAST Vacuolar membrane-associated protein IML1; TrEMBL-Plants: tr|V7CWR7|V7CWR7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0149800_LC
Domains
6
LotjaGi4g1v0156300_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G43590.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A061FQP6|A0A061FQP6_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi4g1v0156300_LC
Domains
12
LotjaGi4g1v0158800_LC.1
– Gag-pro-like protein; TAIR: AT5G67160.1 HXXXD-type acyl-transferase family protein; Swiss-Prot: sp|Q63053|ARC_RAT Activity-regulated cytoskeleton-associated protein; TrEMBL-Plants: tr|A0A0L9VSW4|A0A0L9VSW4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0158800_LC
Domains
4
LotjaGi4g1v0162600_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z7G4|A0A1B5Z7G4_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0162600_LC
Domains
5
LotjaGi4g1v0166500_LC.1
– Retrotransposon protein, putative, unclassified; TAIR: AT2G01750.2 microtubule-associated proteins 70-3; Swiss-Prot: sp|H2LRU7|PKD2_ORYLA Polycystin-2; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0166500_LC
Domains
4
LotjaGi4g1v0186700_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT1G33420.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O14324|YB79_SCHPO Uncharacterized membrane protein C16E9.09c; TrEMBL-Plants: tr|A0A151RJ92|A0A151RJ92_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0186700_LC
Domains
3
LotjaGi4g1v0187300.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT1G48520.1 GLU-ADT subunit B; Swiss-Prot: sp|Q9RZE7|PARB2_DEIRA Probable chromosome 2-partitioning protein ParB; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi4g1v0187300
Domains
4
LotjaGi4g1v0192800_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z7G4|A0A1B5Z7G4_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0192800_LC
Domains
6
LotjaGi4g1v0205100.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q4WGS4|DDI1_ASPFU DNA damage-inducible protein 1; TrEMBL-Plants: tr|A0A151TWR6|A0A151TWR6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0205100
Domains
10
LotjaGi4g1v0205500_LC.1
– Retrotransposon protein, putative, unclassified; TAIR: AT1G63770.1 Peptidase M1 family protein; Swiss-Prot: sp|Q54ET6|ABPF_DICDI Actin-binding protein F; TrEMBL-Plants: tr|A0A151TV51|A0A151TV51_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0205500_LC
Domains
5
LotjaGi4g1v0214600.1
– Transposable element protein, putative, Retrotrans_gag; TAIR: ATCG00480.1 ATP synthase subunit beta (ChrC); Swiss-Prot: sp|O94613|NDOR1_SCHPO NADPH-dependent diflavin oxidoreductase 1; TrEMBL-Plants: tr|A0A151QNH2|A0A151QNH2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0214600
Domains
5
LotjaGi4g1v0215500.1
– DNA-directed RNA polymerase subunit beta''; TAIR: ATCG00170.1 DNA-directed RNA polymerase family protein (ChrC); Swiss-Prot: sp|P48120|RPOC2_CYAPA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|A0A151QQY4|A0A151QQY4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215500
Domains
5
LotjaGi4g1v0218200_LC.1
– Transposable element protein, putative, Retrotrans_gag; TAIR: AT4G23600.3 Tyrosine transaminase family protein; Swiss-Prot: sp|Q89DR1|GREA_BRADU Transcription elongation factor GreA; TrEMBL-Plants: tr|A0A151S4N2|A0A151S4N2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0218200_LC
Domains
4
LotjaGi4g1v0228900_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G01420.1 Auxin efflux carrier family protein; Swiss-Prot: sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0228900_LC
Domains
3
LotjaGi4g1v0257600.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A7ZUN0|ACEK_ECO24 Isocitrate dehydrogenase kinase/phosphatase; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0257600
Domains
9
LotjaGi4g1v0259500.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A151T4G5|A0A151T4G5_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0259500
Domains
10
LotjaGi4g1v0260100.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q022S9|XYLA_SOLUE Xylose isomerase; TrEMBL-Plants: tr|A0A151U9A5|A0A151U9A5_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0260100
Domains
7
LotjaGi4g1v0313200.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A0B2P7I4|A0A0B2P7I4_GLYSO Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0313200
Domains
21
LotjaGi4g1v0313200.2
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q3ANH5|MUTS_SYNSC DNA mismatch repair protein MutS; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0313200
Domains
6
LotjaGi4g1v0335900.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT1G08440.1 aluminum activated malate transporter family protein; Swiss-Prot: sp|Q10Z46|PGK_TRIEI Phosphoglycerate kinase; TrEMBL-Plants: tr|A0A1B5Z865|A0A1B5Z865_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0335900
Domains
9
LotjaGi4g1v0368100_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi4g1v0368100_LC
Domains
25
LotjaGi4g1v0376400_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|V7CWR7|V7CWR7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0376400_LC
Domains
6
LotjaGi4g1v0434500_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|Q8AWC3|ARC_CHICK Activity-regulated cytoskeleton-associated protein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi4g1v0434500_LC
Domains
5
LotjaGi4g1v0434500_LC.2
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|Q8AWC3|ARC_CHICK Activity-regulated cytoskeleton-associated protein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi4g1v0434500_LC
Domains
5
LotjaGi4g1v0434500_LC.3
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|Q8AWC3|ARC_CHICK Activity-regulated cytoskeleton-associated protein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi4g1v0434500_LC
Domains
5
LotjaGi5g1v0040800.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P36294|NCAP_TSWVS Nucleoprotein; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0040800
Domains
6
LotjaGi5g1v0075300.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q864S8|BRCA2_FELCA Breast cancer type 2 susceptibility protein homolog; TrEMBL-Plants: tr|A0A151TJ62|A0A151TJ62_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0075300
Domains
5
LotjaGi5g1v0081300_LC.1
– Gag-Pol polyprotein/retrotransposon; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q924C1|XPO5_MOUSE Exportin-5; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0081300_LC
Domains
3
LotjaGi5g1v0102200.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P19558|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0102200
Domains
7
LotjaGi5g1v0117400_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G60860.1 SEC7-like guanine nucleotide exchange family protein; Swiss-Prot: sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1; TrEMBL-Plants: tr|Q69F85|Q69F85_PHAVU Gag-pol polyprotein; Found in the gene: LotjaGi5g1v0117400_LC
Domains
5
LotjaGi5g1v0124200_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT1G13630.3 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8C6S9|CFA54_MOUSE Cilia- and flagella-associated protein 54; TrEMBL-Plants: tr|A0A1D6DKT5|A0A1D6DKT5_WHEAT Uncharacterized protein; Found in the gene: LotjaGi5g1v0124200_LC
Domains
6
LotjaGi5g1v0124300_LC.1
– Gag-Pol polyprotein; TAIR: AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|P05895|POL_SIVVT Gag-Pol polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi5g1v0124300_LC
Domains
12
LotjaGi5g1v0126400.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0126400
Domains
9
LotjaGi5g1v0127200_LC.1
– Gag-Pol polyprotein; TAIR: AT4G36020.1 cold shock domain protein 1; Swiss-Prot: sp|P31821|GAG_FIVT2 Gag polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi5g1v0127200_LC
Domains
13
LotjaGi5g1v0153000_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|Q5NBX1|COBL_MOUSE Protein cordon-bleu; TrEMBL-Plants: tr|A0A151R9M9|A0A151R9M9_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi5g1v0153000_LC
Domains
9
LotjaGi5g1v0200900_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|Q2G8S2|PYRF_NOVAD Orotidine 5'-phosphate decarboxylase; TrEMBL-Plants: tr|A0A1J7G409|A0A1J7G409_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0200900_LC
Domains
4
LotjaGi5g1v0334400_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q0VCK0|PUR9_BOVIN Bifunctional purine biosynthesis protein PURH; TrEMBL-Plants: tr|I7AYD2|I7AYD2_PHAVU Retropepsin-like protein; Found in the gene: LotjaGi5g1v0334400_LC
Domains
9
LotjaGi5g1v0343500_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi5g1v0343500_LC
Domains
37
LotjaGi5g1v0358600_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2; TrEMBL-Plants: tr|A0A1B5Z7G4|A0A1B5Z7G4_TRISU Uncharacterized protein; Found in the gene: LotjaGi5g1v0358600_LC
Domains
6
LotjaGi6g1v0004600_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G09130.1 hypothetical protein; Swiss-Prot: sp|A6RF09|LOC1_AJECN 60S ribosomal subunit assembly/export protein LOC1; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0004600_LC
Domains
5
LotjaGi6g1v0011000_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|Q96BY2|MOAP1_HUMAN Modulator of apoptosis 1; TrEMBL-Plants: tr|A0A151T2V2|A0A151T2V2_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi6g1v0011000_LC
Domains
5
LotjaGi6g1v0016800.1
– DNA-directed RNA polymerase subunit beta''; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q06FX1|RPOC2_PELHO DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|I7AYD2|I7AYD2_PHAVU Retropepsin-like protein; Found in the gene: LotjaGi6g1v0016800
Domains
8
LotjaGi6g1v0016800.2
– DNA-directed RNA polymerase subunit beta''; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q06FX1|RPOC2_PELHO DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|I7AYD2|I7AYD2_PHAVU Retropepsin-like protein; Found in the gene: LotjaGi6g1v0016800
Domains
8
LotjaGi6g1v0027100_LC.1
– Gag-Pol polyprotein; TAIR: AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|P53849|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi6g1v0027100_LC
Domains
12
LotjaGi6g1v0046800.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G02820.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P12451|POL_HV2SB Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0046800
Domains
12
LotjaGi6g1v0053100.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P25601|YCH5_YEAST Putative transposon Ty5-1 protein YCL075W; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0053100
Domains
7
LotjaGi6g1v0077700.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P19558|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0077700
Domains
7
LotjaGi6g1v0094100.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT5G48050.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q9QJT6|GLYCO_SHRV Glycoprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi6g1v0094100
Domains
4
LotjaGi6g1v0098700_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q4L5M8|BSHC_STAHJ Putative cysteine ligase BshC; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0098700_LC
Domains
3
LotjaGi6g1v0111200_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT2G18450.1 succinate dehydrogenase 1-2; Swiss-Prot: sp|Q05979|KYNU_YEAST Kynureninase; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi6g1v0111200_LC
Domains
4
LotjaGi6g1v0113700_LC.1
– Gag-Pol polyprotein; TAIR: AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 33; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A151QTG4|A0A151QTG4_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi6g1v0113700_LC
Domains
12
LotjaGi6g1v0113700_LC.2
– Gag-Pol polyprotein; TAIR: AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 33; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A151QTG4|A0A151QTG4_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi6g1v0113700_LC
Domains
12
LotjaGi6g1v0115300_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G17320.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9MZV7|CASP1_CANLF Caspase-1; TrEMBL-Plants: tr|Q2AA09|Q2AA09_ASPOF Retrotransposon gag protein; Found in the gene: LotjaGi6g1v0115300_LC
Domains
3
LotjaGi6g1v0117100_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|A6QPB3|COHA1_BOVIN Collagen alpha-1(XVII) chain; TrEMBL-Plants: tr|A0A1J7G409|A0A1J7G409_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0117100_LC
Domains
6
LotjaGi6g1v0125000_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G75560.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151RHT9|A0A151RHT9_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi6g1v0125000_LC
Domains
24
LotjaGi6g1v0130600_LC.1
– Gag-Pol polyprotein; TAIR: AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 33; Swiss-Prot: sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1; TrEMBL-Plants: tr|A0A151QTG4|A0A151QTG4_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi6g1v0130600_LC
Domains
12
LotjaGi6g1v0136500_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|Q0I0Y7|DNAA_HAES1 Chromosomal replication initiator protein DnaA; TrEMBL-Plants: tr|A0A151RY91|A0A151RY91_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0136500_LC
Domains
5
LotjaGi6g1v0140900_LC.1
– Ty3/Gypsy polyprotein/retrotransposon, putative; TAIR: AT3G10400.1 RNA recognition motif and CCHC-type zinc finger domains containing protein; Swiss-Prot: sp|P03543|CAPSD_CAMVC Capsid protein; TrEMBL-Plants: tr|A0A0B2QJ02|A0A0B2QJ02_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0140900_LC
Domains
11
LotjaGi6g1v0140900_LC.2
– Ty3/Gypsy polyprotein/retrotransposon, putative; TAIR: AT3G44713.1 hypothetical protein; Swiss-Prot: sp|Q5DTT4|RGAG4_MOUSE Retrotransposon gag domain-containing protein 4; TrEMBL-Plants: tr|A0A0B2NXJ3|A0A0B2NXJ3_GLYSO Ubiquitin carboxyl-terminal hydrolase 12; Found in the gene: LotjaGi6g1v0140900_LC
Domains
4
LotjaGi6g1v0147500_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G09130.1 hypothetical protein; TrEMBL-Plants: tr|A0A1B5Z8R4|A0A1B5Z8R4_TRISU Uncharacterized protein; Found in the gene: LotjaGi6g1v0147500_LC
Domains
5
LotjaGi6g1v0182500_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G75560.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P16900|GAG_OMVVS Gag polyprotein; TrEMBL-Plants: tr|A0A151RID1|A0A151RID1_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0182500_LC
Domains
17
LotjaGi6g1v0185800_LC.1
– Gag-Pol polyprotein; TAIR: AT3G43590.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C; TrEMBL-Plants: tr|A0A151RID1|A0A151RID1_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0185800_LC
Domains
13
LotjaGi6g1v0214100_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr|A0A151TQZ3|A0A151TQZ3_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC
Domains
30
LotjaGi6g1v0214100_LC.2
– Gag-Pol polyprotein; TAIR: AT1G75560.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|O91080|POL_HV1YF Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151RID1|A0A151RID1_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC
Domains
14
LotjaGi6g1v0214100_LC.3
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC
Domains
44
LotjaGi6g1v0214100_LC.4
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr|A0A151TQZ3|A0A151TQZ3_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC
Domains
30
LotjaGi6g1v0214100_LC.5
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC
Domains
44
LotjaGi6g1v0214100_LC.6
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC
Domains
44
LotjaGi6g1v0214100_LC.7
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC
Domains
44
LotjaGi6g1v0214100_LC.8
– Gag-Pol polyprotein; TAIR: AT3G43590.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|O91080|POL_HV1YF Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151RID1|A0A151RID1_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC
Domains
14
LotjaGi6g1v0214100_LC.9
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC
Domains
44
LotjaGi6g1v0215200.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P56690|SYI_THET8 Isoleucine--tRNA ligase; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0215200
Domains
7
LotjaGi6g1v0218100_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC
Domains
42
LotjaGi6g1v0218100_LC.2
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC
Domains
42
LotjaGi6g1v0218100_LC.3
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC
Domains
42
LotjaGi6g1v0218100_LC.4
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC
Domains
42
LotjaGi6g1v0218100_LC.5
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G02820.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P12451|POL_HV2SB Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC
Domains
12
LotjaGi6g1v0242000.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|B1Z700|TSAD_METPB tRNA N6-adenosine threonylcarbamoyltransferase; TrEMBL-Plants: tr|A0A151U9A5|A0A151U9A5_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0242000
Domains
8
LotjaGi6g1v0279900.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G42723.1 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A151RSW7|A0A151RSW7_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0279900
Domains
10
LotjaGi6g1v0291800_LC.1
– Retrotransposon protein, putative, unclassified; TAIR: AT1G68920.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9WU22|PTN4_MOUSE Tyrosine-protein phosphatase non-receptor type 4; TrEMBL-Plants: tr|Q69F85|Q69F85_PHAVU Gag-pol polyprotein; Found in the gene: LotjaGi6g1v0291800_LC
Domains
5
LotjaGi6g1v0327800.1
– Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0327800
Domains
6
LotjaGi6g1v0334500.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|P18479|POLG_ZYMVC Genome polyprotein; TrEMBL-Plants: tr|Q3C0I0|Q3C0I0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0334500
Domains
9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00303 CDD 1 0.48