Domain Predictions — View

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PF14244

Source: Pfam

Description

gag-polypeptide of LTR copia-type

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 80

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0161659.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retroelement pol polyprotein-like [Arabidopsis thaliana] gi\|9758329\|dbj\|BAB08885.1\|	Domains CYTOPLASMIC_DOMAIN IPR029472 NON_CYTOPLASMIC_DOMAIN PF14244 PTHR37610 PTHR37610:SF1 TRANSMEMBRANE	7
Lj0g3v0165099.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	F27F5.19 [Arabidopsis thaliana] gi\|7767664\|gb\|AAF69161.1\|AC007915_13	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF2 mobidb-lite	6
Lj0g3v0170709.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Beta-galactosidase [Medicago truncatula] gi\|357453875\|ref\|XP_003597218.1\|	Domains IPR029472 PF14244 PTHR34222 mobidb-lite	4
Lj0g3v0204879.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Uncharacterized protein TCM_032521 [Theobroma cacao] gi\|508721954\|gb\|EOY13851.1\|	Domains IPR029472 PF14244	2
Lj0g3v0216479.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] gi\|124359649\|gb\|ABD32334.2\|	Domains IPR029472 PF14244	2
Lj0g3v0220649.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	At5g39185 [Arabidopsis thaliana] gi\|50253554\|gb\|AAT71979.1\|	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR11439 PTHR11439:SF185 mobidb-lite	7
Lj0g3v0231059.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Contains similarity to reverse transcriptases (Pfam; rvt.hmm, score: 11.19) [Arabidopsis thaliana] gi\|3513747\|gb\|AAC33963.1\|	Domains IPR029472 NON_CYTOPLASMIC_DOMAIN PF14244 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-noTM_EUK	8
Lj0g3v0259169.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cucumisin-like [Vitis vinifera] gi\|359478591\|ref\|XP_002280329.2\|	Domains IPR029472 PF14244	2
Lj0g3v0272509.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains IPR029472 PF14244 PTHR11439 mobidb-lite	4
Lj0g3v0280629.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retroelement pol polyprotein-like [Arabidopsis thaliana] gi\|8843739\|dbj\|BAA97287.1\|	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR11439 PTHR11439:SF185 mobidb-lite	7
Lj0g3v0316339.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Uncharacterized protein TCM_019201 [Theobroma cacao] gi\|508712071\|gb\|EOY03968.1\|	Domains IPR029472 PF14244	2
Lj0g3v0357809.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ALWAYS EARLY 2-like [Vitis vinifera] gi\|359487806\|ref\|XP_003633652.1\|	Domains IPR029472 PF14244 PTHR37610 PTHR37610:SF1	4
Lj0g3v0362299.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty1/copia-element polyprotein [Arabidopsis thaliana] gi\|12322504\|gb\|AAG51258.1\|AC025782_3	Domains IPR001878 IPR029472 PF14244 PS50158 PTHR37610 mobidb-lite	6
Lj1g3v0488870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Uncharacterized protein TCM_032521 [Theobroma cacao] gi\|508721954\|gb\|EOY13851.1\|	Domains IPR029472 PF14244 PTHR37610 PTHR37610:SF1	4
Lj1g3v0828100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty1/copia-element polyprotein [Arabidopsis thaliana] gi\|12322504\|gb\|AAG51258.1\|AC025782_3	Domains IPR001878 IPR005162 IPR029472 PF03732 PF14244 PTHR11439 PTHR11439:SF185 SSF57756 mobidb-lite	9
Lj2g3v1019670.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao] gi\|508718075\|gb\|EOY09972.1\|	Domains IPR029472 PF14244 PTHR37610 PTHR37610:SF1	4
Lj2g3v2029950.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	F27F5.19 [Arabidopsis thaliana] gi\|7767664\|gb\|AAF69161.1\|AC007915_13	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR11439 mobidb-lite	6
Lj2g3v2843520.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cucumisin-like [Vitis vinifera] gi\|359478591\|ref\|XP_002280329.2\|	Domains IPR029472 PF14244	2
Lj3g3v1789100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	F27F5.19 [Arabidopsis thaliana] gi\|7767664\|gb\|AAF69161.1\|AC007915_13	Domains IPR001878 IPR029472 PF14223 PF14244 PTHR34222 SSF57756 mobidb-lite	7
Lj3g3v3617790.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retroelement pol polyprotein-like [Arabidopsis thaliana] gi\|9758329\|dbj\|BAB08885.1\|	Domains CYTOPLASMIC_DOMAIN IPR029472 NON_CYTOPLASMIC_DOMAIN PF14244 PTHR37610 PTHR37610:SF1 TRANSMEMBRANE	7
Lj4g3v2081450.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ALWAYS EARLY 2-like [Vitis vinifera] gi\|359487806\|ref\|XP_003633652.1\|	Domains IPR029472 PF14244 mobidb-lite	3
Lj5g3v1118380.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	T7N9.5 [Arabidopsis thaliana] gi\|8778880\|gb\|AAF79879.1\|AC000348_32	Domains IPR029472 PF14244	2
Lj6g3v0001250.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cucumisin-like [Vitis vinifera] gi\|359478591\|ref\|XP_002280329.2\|	Domains IPR029472 PF14244 PTHR37610 PTHR37610:SF1	4
Lj6g3v1382380.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	F27F5.19 [Arabidopsis thaliana] gi\|7767664\|gb\|AAF69161.1\|AC007915_13	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR11439 PTHR11439:SF185 mobidb-lite	7
LotjaGi1g1v0031100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0031100	Domains Coil IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	8
LotjaGi1g1v0201800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151QNL0\|A0A151QNL0_CAJCA Putative transposon Ty5-1 protein YCL075W family; Found in the gene: LotjaGi1g1v0201800	Domains IPR029472 PF14223 PF14244 PTHR37610 PTHR37610:SF6 mobidb-lite	6
LotjaGi1g1v0201800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151QNL0\|A0A151QNL0_CAJCA Putative transposon Ty5-1 protein YCL075W family; Found in the gene: LotjaGi1g1v0201800	Domains IPR029472 PF14223 PF14244 PTHR37610 PTHR37610:SF6 mobidb-lite	6
LotjaGi1g1v0253100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P19558\|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0253100	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	7
LotjaGi1g1v0256300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q7TN75\|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr\|A0A0S3SX19\|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0256300	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	7
LotjaGi1g1v0297500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q06AK6\|TFP11_PIG Tuftelin-interacting protein 11; TrEMBL-Plants: tr\|Q2HU07\|Q2HU07_MEDTR Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi1g1v0297500	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5	6
LotjaGi1g1v0297500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q06AK6\|TFP11_PIG Tuftelin-interacting protein 11; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0297500	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5	6
LotjaGi1g1v0512600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|A8FL10\|DNLJ_CAMJ8 DNA ligase; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0512600	Domains IPR001878 IPR005162 IPR029472 IPR036875 PF03732 PF14244 PS50158 PTHR34222 PTHR34222:SF5 SSF57756 mobidb-lite	11
LotjaGi1g1v0562200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q05142\|COAT_NVMV Coat protein; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0562200	Domains CYTOPLASMIC_DOMAIN IPR005162 IPR029472 NON_CYTOPLASMIC_DOMAIN PF03732 PF14244 PTHR37610 PTHR37610:SF7 TRANSMEMBRANE	9
LotjaGi1g1v0655800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q7TN75\|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr\|A0A0S3SX19\|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655800	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	7
LotjaGi1g1v0674500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q7TN75\|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr\|A0A0S3SX19\|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0674500	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi2g1v0091300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q8RWJ7\|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr\|A0A151ST33\|A0A151ST33_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0091300_LC	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR37610 PTHR37610:SF31 mobidb-lite	7
LotjaGi2g1v0098400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q8LPK0\|AB8A_ARATH ABC transporter A family member 8; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0098400	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	7
LotjaGi2g1v0136000_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P04146\|COPIA_DROME Copia protein; TrEMBL-Plants: tr\|A0A151TNK9\|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0136000_LC	Domains IPR005162 IPR029472 NON_CYTOPLASMIC_DOMAIN PF03732 PF14244 PTHR37610 PTHR37610:SF7 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION mobidb-lite	12
LotjaGi3g1v0067100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151RJ01\|A0A151RJ01_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0067100	Domains G3DSA:3.30.420.10 IPR001584 IPR001878 IPR005162 IPR012337 IPR013103 IPR025724 IPR029472 IPR036397 IPR043502 PF00665 PF03732 PF07727 PF13976 PF14244 PS50158 PS50994 PTHR11439 PTHR11439:SF273 SSF53098 SSF56672 cd09272 mobidb-lite	23
LotjaGi3g1v0106900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q1GRI1\|MNMA_SPHAL tRNA-specific 2-thiouridylase MnmA; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0106900_LC	Domains IPR029472 PF14244 PTHR37610 PTHR37610:SF13 mobidb-lite	5
LotjaGi3g1v0117200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q9C0B0\|UNK_HUMAN RING finger protein unkempt homolog; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0117200	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5	6
LotjaGi3g1v0133900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|A6U1Q5\|EBH_STAA2 Extracellular matrix-binding protein ebh; TrEMBL-Plants: tr\|A0A151TNK9\|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0133900	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5	6
LotjaGi3g1v0168800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P19558\|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0168800	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR37610 PTHR37610:SF7 mobidb-lite	7
LotjaGi3g1v0273600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151TNK9\|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0273600	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5	6
LotjaGi3g1v0273600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|A0A0C4DH33\|HV124_HUMAN Immunoglobulin heavy variable 1-24; TrEMBL-Plants: tr\|A0A151TNK9\|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0273600	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5	6
LotjaGi3g1v0277800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q864S8\|BRCA2_FELCA Breast cancer type 2 susceptibility protein homolog; TrEMBL-Plants: tr\|A0A151QSM9\|A0A151QSM9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0277800	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi3g1v0353500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|B9W9Z5\|LCL3_CANDC Probable endonuclease LCL3; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0353500	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	7
LotjaGi3g1v0357300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp\|P04146\|COPIA_DROME Copia protein; TrEMBL-Plants: tr\|A0A151SIC5\|A0A151SIC5_CAJCA Copia protein; Found in the gene: LotjaGi3g1v0357300_LC	Domains IPR013103 IPR029472 IPR043502 PF07727 PF14244 PTHR11439 PTHR11439:SF275 SSF56672 cd09272	9
LotjaGi3g1v0357400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|A8FL10\|DNLJ_CAMJ8 DNA ligase; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0357400	Domains IPR001878 IPR005162 IPR029472 IPR036875 PF03732 PF14244 PS50158 PTHR34222 PTHR34222:SF5 SSF57756 mobidb-lite	11
LotjaGi3g1v0386800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q6BUT3\|NST1_DEBHA Stress response protein NST1; TrEMBL-Plants: tr\|A0A151RE46\|A0A151RE46_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0386800	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi3g1v0442500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q2IJI0\|ACEK_ANADE Isocitrate dehydrogenase kinase/phosphatase; TrEMBL-Plants: tr\|A0A151RIX3\|A0A151RIX3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0442500	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR37610 PTHR37610:SF6	6
LotjaGi3g1v0442500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q2IJI0\|ACEK_ANADE Isocitrate dehydrogenase kinase/phosphatase; TrEMBL-Plants: tr\|A0A151RIX3\|A0A151RIX3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0442500	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR37610 PTHR37610:SF6	6
LotjaGi3g1v0517000_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-pol polyprotein; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q75001\|GAG_HV1ET Gag polyprotein; TrEMBL-Plants: tr\|A0A151R7L7\|A0A151R7L7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0517000_LC	Domains G3DSA:4.10.60.10 IPR001878 IPR029472 IPR036875 PF14223 PF14244 PS50158 PTHR37610 PTHR37610:SF8 SM00343 SSF57756	11
LotjaGi4g1v0033100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P04146\|COPIA_DROME Copia protein; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0033100_LC	Domains IPR001878 IPR005162 IPR025724 IPR029472 PF03732 PF13976 PF14244 PS50158 PTHR34222 PTHR34222:SF5 mobidb-lite	11
LotjaGi4g1v0131600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q3UPR7\|TM102_MOUSE Transmembrane protein 102; TrEMBL-Plants: tr\|A0A0S3SX19\|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131600	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR37610 PTHR37610:SF7	6
LotjaGi4g1v0185200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q6TDP4\|KLH17_HUMAN Kelch-like protein 17; TrEMBL-Plants: tr\|A0A151R7L7\|A0A151R7L7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0185200	Domains IPR029472 PF14223 PF14244 PTHR37610 PTHR37610:SF8	5
LotjaGi4g1v0257600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|A7ZUN0\|ACEK_ECO24 Isocitrate dehydrogenase kinase/phosphatase; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0257600	Domains IPR001878 IPR005162 IPR029472 PF03732 PF14244 PS50158 PTHR34222 PTHR34222:SF5 mobidb-lite	9
LotjaGi4g1v0260100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q022S9\|XYLA_SOLUE Xylose isomerase; TrEMBL-Plants: tr\|A0A151U9A5\|A0A151U9A5_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0260100	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	7
LotjaGi4g1v0266500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0266500	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi4g1v0313200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A0B2P7I4\|A0A0B2P7I4_GLYSO Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0313200	Domains G3DSA:3.30.420.10 IPR001584 IPR005162 IPR012337 IPR013103 IPR025724 IPR029472 IPR036397 IPR043502 PF00665 PF03732 PF07727 PF13976 PF14244 PS50994 PTHR11439 PTHR11439:SF273 SSF53098 SSF56672 cd09272 mobidb-lite	21
LotjaGi4g1v0313200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q3ANH5\|MUTS_SYNSC DNA mismatch repair protein MutS; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0313200	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5	6
LotjaGi4g1v0331100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P0CG32\|ZCC18_HUMAN Zinc finger CCHC domain-containing protein 18; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0331100	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi4g1v0444800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P41544\|SYS1_YEAST Protein SYS1; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0444800	Domains IPR029472 PF14244 PTHR37610 PTHR37610:SF7	4
LotjaGi5g1v0044900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|O76743\|GLH4_CAEEL ATP-dependent RNA helicase glh-4; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0044900_LC	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi5g1v0046700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q7TN75\|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr\|A0A0S3SX19\|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0046700	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi5g1v0056500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|A8F3R6\|SYS_PSELT Serine--tRNA ligase; TrEMBL-Plants: tr\|A0A0S3SX19\|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0056500	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi5g1v0102200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P19558\|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0102200	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR37610 PTHR37610:SF7 mobidb-lite	7
LotjaGi5g1v0120500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151U9A5\|A0A151U9A5_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0120500	Domains IPR029472 IPR036875 PF14223 PF14244 PTHR37610 PTHR37610:SF25 SSF57756 mobidb-lite	8
LotjaGi5g1v0126400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0126400	Domains IPR005162 IPR029472 IPR036875 PF03732 PF14244 PTHR34222 PTHR34222:SF5 SSF57756 mobidb-lite	9
LotjaGi5g1v0184500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|O31521\|URHG1_BACSU Unsaturated rhamnogalacturonyl hydrolase YesR; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0184500	Domains IPR029472 PF14244 PTHR37610 PTHR37610:SF7	4
LotjaGi5g1v0296100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P04146\|COPIA_DROME Copia protein; TrEMBL-Plants: tr\|A0A151RE46\|A0A151RE46_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0296100	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi5g1v0346300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q80TF6\|STAR9_MOUSE StAR-related lipid transfer protein 9; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0346300	Domains IPR029472 PF14244 PTHR37610 PTHR37610:SF7	4
LotjaGi6g1v0053100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P25601\|YCH5_YEAST Putative transposon Ty5-1 protein YCL075W; TrEMBL-Plants: tr\|A0A151TNK9\|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0053100	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	7
LotjaGi6g1v0077700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P19558\|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0077700	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	7
LotjaGi6g1v0080100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|A5K6I6\|GUF1_PLAVS Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr\|W9R951\|W9R951_9ROSA Uncharacterized protein; Found in the gene: LotjaGi6g1v0080100_LC	Domains IPR029472 PF14244 PTHR37610 PTHR37610:SF28 mobidb-lite	5
LotjaGi6g1v0133800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151RAD3\|A0A151RAD3_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0133800	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR013103 IPR025724 IPR029472 IPR036397 IPR043502 PF00665 PF07727 PF13976 PF14223 PF14244 PS50994 PTHR11439 PTHR11439:SF273 SSF53098 SSF56672 cd09272 mobidb-lite	20
LotjaGi6g1v0187000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A5AGK3\|A5AGK3_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0187000	Domains G3DSA:3.30.420.10 G3DSA:4.10.60.10 IPR001584 IPR001878 IPR012337 IPR013103 IPR025724 IPR029472 IPR036397 IPR036875 IPR043502 PF00098 PF00665 PF07727 PF13976 PF14223 PF14244 PS50158 PS50994 PTHR11439 PTHR11439:SF273 SM00343 SSF53098 SSF56672 SSF57756 cd09272 mobidb-lite	27
LotjaGi6g1v0215200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P56690\|SYI_THET8 Isoleucine--tRNA ligase; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0215200	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	7
LotjaGi6g1v0321000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P0CG32\|ZCC18_HUMAN Zinc finger CCHC domain-containing protein 18; TrEMBL-Plants: tr\|A0A151TMA1\|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0321000	Domains IPR029472 PF14223 PF14244 PTHR34222 PTHR34222:SF5 mobidb-lite	6
LotjaGi6g1v0327800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151QYF6\|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0327800	Domains IPR005162 IPR029472 PF03732 PF14244 PTHR34222 PTHR34222:SF5	6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
PTHR34222:SF5	PANTHER	1	1.25