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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0446400 |
| Transcript ID | LotjaGi3g1v0446400.9 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aminotransferase-related family protein; TAIR: AT5G53970.1 Tyrosine transaminase family protein; Swiss-Prot: sp|Q9FN30|TAT2_ARATH Probable aminotransferase TAT2; TrEMBL-Plants: tr|A0A151SF02|A0A151SF02_CAJCA Tyrosine aminotransferase; Found in the gene: LotjaGi3g1v0446400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85979964..85983493) extracted from Lotus japonicus Gifu genome v1.2.
TCAGTTCTCATCACTTGTATTGGTTCACCAATCTCAGATAGACAGAGTGAATGGATAACGGAAGCGAGAGGTGGAATTTC CAAGGTAACAAAGGGCTCAATGCTTCAACCGTCTCTGTGAGTGGGGTCTATAGCATGCTCATGGATAGCATCAGCAACAA TGTAGACAACAAAAAACCTCTGGTTCGCCTCTGTCGTGTTGATCCTACTGATAATCCATTGTTAAGGACTACCCATGTTG CTCCTGATGCTGTTGCAACTGCTGCTCACTCCATTAACTTCAATTGTTACCCTCCCACTGTTGGCTTACCTGATGCAAAG AGGTGTGTTTCCCCTCATCAATTATAGATAAAAATGCTATTAGTTTATCATGAAGTCATAGTAATGTCTTTAGTAATTGA CTAATTGGTAAGAAACTAAAAGGTTTTGTGGTTCAATAGAGATTTATACACACCCAAATTGCATGTCCACATCCAAGCTT GGAGGATATAGGAATAGAAAAGAGAGAAGTAATATGATAGGTAAAGAAGAGAGATATGAAGAAAAAGTATGTGGAAATAT GATGGAAGAGAAAACGAGTGTGAATGTATAAAAACTGTGTGGTTATATATTTTTGATGTGGACAAACTTTGGTAAGTCTA TGTTGGATTGATGAATGAGTCTCACATAGAATAAAAATGAATATGTTGAACAACGTACAAGTAGAGGACCATTTACTTAA AACTTTAAGGTTTTGAGTGAAGTGTATAGTATGCGAGGTGAAGGAAGAAGAGCTATGTACTGAACAAGAAAATTGAAAGA GAAGCTTTTCACTGCTATTGTGCTGCGCCCCTCTTCTCTTTATAGTCCTTTATGGGAAAGGAAGGGGTTGAATCAATTGA ATAGATATCCTGATTTGGGTGTGTTTTGTGAGTTGAGTTTTTGAGGCGAGAGAAGTGAGGAAGAGGCTTCCATTGTTTGA GTTTTTAAGAGGGGGGAAGGGTTTGGAGAATTTTTTAAAACCCTCCTAGACCCCCAAGACCCACCATTAGTTGTTTTTTG GAGTTCCCCCAAATTGGAGGGTTTAGAGGAATTTGGAACTTGCAGACAAGGGAAGGGCTTACCCCTCTTCCCCCCCACTT CCCCTTCCCTTCAAAGCCTTCCCTTCTCCTCCACTAAAAACTCGCAAACAAGCCTTAAGCAAGTTCTCAGGTTCTCCATA GGGAAATCTAGCCTCACTTTGAAGAATGTTCCCGACTCAAACATATGATTGTCTCGAATTGAGGATAAATGTGATGGTCC AATTTTTTTTTCAGTGTACTCTCTGTTGGGTTAGTCACAGATGAAAATCAGTTTTCAACCTTTTCTGTCTCTTTTTGTGT CCTAATAAAAACATAATAGTTCCCTGAAATAATTTGACAACTTGAAGATAAAGGAAATAATTTTTTGTTAAGGTTTTCTA TTTTCATTAGAAGGAGTTGGAAAGGAGCAGGTGATTTCTGTAATCCATTATTGACATTGGTATTTCATATTTGCTAATCT TATCTAACACGTGAATATGGAATTTCTGGAGCCAAAAATCTATTAAACATGTTTAAATATGATAATTTGGTGAAATATTG CCATTTCCTAAACAGGGCTATTGCAAATTATCTCTCTTCAGATCTTCCATACCAGTTATCACCAGACAATGTTTTTCTCA CCGTTGGGGGCACACAAGCTATAGATATAATATTACATGTCCTTGCACGTCCTGGTGCCAACATTCTCCTTCCAAGACCA GGGTACCCACTATATGATGCTCATGCTGCTTGTTGTCTCCTTGAAGTTCGGTACTTTGATCTCTCGCCTGAGAGAGGATG GGAGGTTGACCTTCATTCCCTTGAGGCTCTAGCAGATGAGAACACTGTGGCCATGGTTATAATCAATCCAAGCAATCCAT GTGGGAATGTGTGCACGTTGCAGCATTTAAAAAAGGTACATAATAGTCTTAAACTTCATTGTTTCAGAGTAGAGGAAACA AAATACTAAAGGGTGGCTGTTTAGGTTGTACTTTGATTCCTCGTAAATGTAAGGTCTCGGGCTCGAGTTATGAAGTAAAC CTCTGTTGGGAGATCTAGCTAGCCTCACCTAGATGCGGATGTTCTGACTCGAACATGATTGACTCCCATGAATGATACTT GTATTAGACTAAGAAAAGAGTAGGAAACAAAATGTGACAATTTTTCAGGACTCTTGTAGGTTGCTGAGACTGCGAGGAAA CTTGGAATCTGTGTAATTTCTGACGAAGTTTATGCCCATGTAGCTTTTGGAAGCAATCCATTTGTGCCAATGGGAGTGTT TGCATCAATAGTGCCAGTTATCACAATTGGGTCCTTATCAAAAAGATGGTTAGTTCCTGGTTGGAGAATTGGCTGGATAG CCACAATGGACCCCCACGAAATTTTTCAAAAAACTGGGGTTAGTGTTTTTTTTACCTTTTGTTTTCAATCTTTTTATCCT TAAAATTTATCAGTCTAAGAGATTTCTCTTTTATCAAGATCAATTGGAGTAAAGATTTTTCACAGCTTAGAAAACCTGAT ATTTGAATGATTATGCAATTGTTTTCTTTCTTTATCAGATCAAGACAAATATCATCAGCTATTTGGAGATCACTTCTGAC CCTCCAACCTTCATGCAGGTAACAAATGGAAACTATAGCATAAGCAAAACGCAAAAGTAACAGAAAAAAACCAACTAGTA TTCTTCGGCCGATCGAATAGATCAACAAAAGCATATATTCAGAATTTAATACGTGTTTGTTTGCTTATGCTTGTATCCTT TTTTGTTCATTTTGTTTTCCCTAAAACAAAAATGACAGAAAGTTAGGCTTGCAGGCTGCAATACCTCAAATCCTTGAGAG AACAAATGATGATTTCCATTTTAAGAATCTGAATATGATGAGAGAGGCTGCAAACATATTCTATGATGTATGTAAGGAGA TCCCTTGCTTGACATGCCCTCACAAACCCGAAGGAGCCATGGCTGCAATGGTAAGTGGCATAAAGAATTCTTAGGCTTTC ATCATGCTATAAATTTAACATGGGGTCATCTTACTCATGATCAATTGACAGTAAATTGAATGAATCAGGTGAAGATTAAC TTTTCAAAAGTTAAGGACATTGTTGATGATTTGGATTTCTGTGTCAAGCTGGCCAAAGAGGAATCTGTAATTCTTCTTCC TGGTAAGAATTCAATTGGTAAATTGAATAAAGTCATATATGACGAGAGTTTCTCTTTATTGGTGTTATTATACTTGCTTG CAGGTGTTACTGTTGGACTAAAGAATTGGCTTCGGATTAGTCTTGCTGTTGACCCTTCTGATCTTGAAGAGGGCCTAAGC AGGATGAAAGCATTCAGCCTTCGGTATGCCAAGATGTCATAAATCATGTCACACGGGAGGGTGTGTTGAATCTTAGGTCT GAGATATCTCCTAATGAGCCATCTTTAAGGCAAGATATATGTATCAAGAAACTGCATTTTATATTATGTTTCATGATGCT CTAGGTTCAA
CDS sequence (LotjaGi3g1v0446400.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAACGGAAGCGAGAGGTGGAATTTCCAAGGTAACAAAGGGCTCAATGCTTCAACCGTCTCTGTGAGTGGGGTCTA TAGCATGCTCATGGATAGCATCAGCAACAATGTAGACAACAAAAAACCTCTGGTTCGCCTCTGTCGTGTTGATCCTACTG ATAATCCATTGTTAAGGACTACCCATGTTGCTCCTGATGCTGTTGCAACTGCTGCTCACTCCATTAACTTCAATTGTTAC CCTCCCACTGTTGGCTTACCTGATGCAAAGAGGGCTATTGCAAATTATCTCTCTTCAGATCTTCCATACCAGTTATCACC AGACAATGTTTTTCTCACCGTTGGGGGCACACAAGCTATAGATATAATATTACATGTCCTTGCACGTCCTGGTGCCAACA TTCTCCTTCCAAGACCAGGGTACCCACTATATGATGCTCATGCTGCTTGTTGTCTCCTTGAAGTTCGGTACTTTGATCTC TCGCCTGAGAGAGGATGGGAGGTTGACCTTCATTCCCTTGAGGCTCTAGCAGATGAGAACACTGTGGCCATGGTTATAAT CAATCCAAGCAATCCATGTGGGAATGTGTGCACGTTGCAGCATTTAAAAAAGGTTGCTGAGACTGCGAGGAAACTTGGAA TCTGTGTAATTTCTGACGAAGTTTATGCCCATGTAGCTTTTGGAAGCAATCCATTTGTGCCAATGGGAGTGTTTGCATCA ATAGTGCCAGTTATCACAATTGGGTCCTTATCAAAAAGATGGTTAGTTCCTGGTTGGAGAATTGGCTGGATAGCCACAAT GGACCCCCACGAAATTTTTCAAAAAACTGGGATCAAGACAAATATCATCAGCTATTTGGAGATCACTTCTGACCCTCCAA CCTTCATGCAGGTAACAAATGGAAACTATAGCATAAGCAAAACGCAAAAGTAA
Protein sequence (LotjaGi3g1v0446400.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNGSERWNFQGNKGLNASTVSVSGVYSMLMDSISNNVDNKKPLVRLCRVDPTDNPLLRTTHVAPDAVATAAHSINFNCY PPTVGLPDAKRAIANYLSSDLPYQLSPDNVFLTVGGTQAIDIILHVLARPGANILLPRPGYPLYDAHAACCLLEVRYFDL SPERGWEVDLHSLEALADENTVAMVIINPSNPCGNVCTLQHLKKVAETARKLGICVISDEVYAHVAFGSNPFVPMGVFAS IVPVITIGSLSKRWLVPGWRIGWIATMDPHEIFQKTGIKTNIISYLEITSDPPTFMQVTNGNYSISKTQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 299 | 294 | 2.6E-136 | – | |
| PANTHER | 6 | 299 | 294 | 2.6E-136 | – | |
| TIGRFAM | 8 | 298 | 291 | 1.9E-109 | ||
| Pfam | 46 | 295 | 250 | 2.6E-44 | ||
| Gene3D | 47 | 61 | 15 | 9.4E-76 | ||
| SUPERFAMILY | 55 | 298 | 244 | 2.82E-59 | ||
| CDD | 55 | 298 | 244 | 2.77621E-60 | – | |
| Gene3D | 62 | 298 | 237 | 9.4E-76 | ||
| PRINTS | 109 | 129 | 21 | 8.7E-11 | – | |
| PRINTS | 131 | 152 | 22 | 8.7E-11 | – | |
| PRINTS | 178 | 202 | 25 | 8.7E-11 | – | |
| PRINTS | 214 | 237 | 24 | 8.7E-11 | – | |
| ProSitePatterns | 249 | 262 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Transaminase activity | Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi3g1v0446400.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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