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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0455600 |
| Transcript ID | LotjaGi3g1v0455600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT4G38210.1 expansin A20; Swiss-Prot: sp|Q9SZM1|EXP20_ARATH Expansin-A20; TrEMBL-Plants: tr|A0A151RWL0|A0A151RWL0_CAJCA Expansin-A16; Found in the gene: LotjaGi3g1v0455600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86924221..86925605) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGCTCTTCACTCTACACTTCTGTACTTGATTTTGTTACATTCATGGCATATTGTAGCTTTGAAGGACCAAGAATG GAGGAAAGCCACAGCCACATACGCCAATGACACAGAGGGATCACTCATTACTGGTACTTCTCTTGCTTCTTTGGTTCTTA TATCGTAGCATGTTTGATTGGTTTCTTTTTTCTCATAATCAATTCTGAAATTTAAACTCTGCTAACAGAAGCTTCTTCCA AAACTAATTCTAGAATCAATTGTAGAAGAATTTCCAAACATACACTTTGCTTGTTCTGCCATGAAAACAATGGTTTGTGT TGACAATGCTGTTGTGCAAGTGTTGCAGAAGGAGCTTGTGGTTATGGAGACCTACACAAGGCAAGCTATGGAAAAAACAG TGCTGGGTTAAGCACCATTTTGTTCAACAGGGGAAGTGCTTGTGGGGCTTGCTATGAGATCAGATGTGTTGACCACATCT TGTGGTGTGTGATGGGGAGCCCTTCTGTGGTTGTTACTGCTACAGATTTCTGTGCTCCAAATTATGGGCTTTCAATTGAT TATGGTGGCTGGTGTAACTTCCCAAGAGAACATTTTGAGTTGTCACAGGCTGCATTTGCTGAAATTGCCAAGGGAAAAGC AGATATAATACCAGTTCAGTATAGAAGGTACAAAAAATTGTTTCAATAATATAGAAAATGTCATGCTTCCATTTGGTCAC CCATTTCATTTTTCATTAAGTGTGTTTAGGTTACTTTTTGTGAAGATAAAATGTTTTGGGATGTGTTGTTTTCCAGTTCC ATACTTTTTGATTGGTAACCATTGCTTGAATCCGGGCTAGACCTAACTCTATCCCGAAAGCTAGCTTAGGCAGAGCTGTG CATTTGCAGCTGGCCTAATAAATGCATCTATGATAGACTTTGATATAATCTTGAAGCCTAATATAAATGCATCTATGATA GAGTCTGATATGATATAGAAGTATATAGATAATGCACAAGTCCACTTATCTTGAAATAACAAAGATCTTGAGTTTAAATT GTGAATATCAGTAACAAATTTTGTTTTTGCAGAGTGAAGTGTGAAAGAAGTGGTGGTTTGAAATTCACAATGAGTGGAAG TTCTCACTTCTATCAAGTCCTGATTACCAACGTGGGGCTGGAAGGTGAAGTGGTTGGAGTGAAAGTGAAGGGATCAAGAA CAGGATGGATCCCCATGGCAAGGAATTGGGGACAAAACTGGCATTGCAATGTGAACCTTCAAAGGCAGCCCCTGTCATTT GAGGTAACCATCAGCAGTGGAAAAACACTCACATCTTATAATGTAGCCCCTATAAAATGGCAGTTTGGACAGACATTTGA AGGGAAACAATTTCAGCTTGAGTAG
CDS sequence (LotjaGi3g1v0455600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTCTTCACTCTACACTTCTGTACTTGATTTTGTTACATTCATGGCATATTGTAGCTTTGAAGGACCAAGAATG GAGGAAAGCCACAGCCACATACGCCAATGACACAGAGGGATCACTCATTACTGAAGGAGCTTGTGGTTATGGAGACCTAC ACAAGGCAAGCTATGGAAAAAACAGTGCTGGGTTAAGCACCATTTTGTTCAACAGGGGAAGTGCTTGTGGGGCTTGCTAT GAGATCAGATGTGTTGACCACATCTTGTGGTGTGTGATGGGGAGCCCTTCTGTGGTTGTTACTGCTACAGATTTCTGTGC TCCAAATTATGGGCTTTCAATTGATTATGGTGGCTGGTGTAACTTCCCAAGAGAACATTTTGAGTTGTCACAGGCTGCAT TTGCTGAAATTGCCAAGGGAAAAGCAGATATAATACCAGTTCAGTATAGAAGAGTGAAGTGTGAAAGAAGTGGTGGTTTG AAATTCACAATGAGTGGAAGTTCTCACTTCTATCAAGTCCTGATTACCAACGTGGGGCTGGAAGGTGAAGTGGTTGGAGT GAAAGTGAAGGGATCAAGAACAGGATGGATCCCCATGGCAAGGAATTGGGGACAAAACTGGCATTGCAATGTGAACCTTC AAAGGCAGCCCCTGTCATTTGAGGTAACCATCAGCAGTGGAAAAACACTCACATCTTATAATGTAGCCCCTATAAAATGG CAGTTTGGACAGACATTTGAAGGGAAACAATTTCAGCTTGAGTAG
Protein sequence (LotjaGi3g1v0455600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGALHSTLLYLILLHSWHIVALKDQEWRKATATYANDTEGSLITEGACGYGDLHKASYGKNSAGLSTILFNRGSACGACY EIRCVDHILWCVMGSPSVVVTATDFCAPNYGLSIDYGGWCNFPREHFELSQAAFAEIAKGKADIIPVQYRRVKCERSGGL KFTMSGSSHFYQVLITNVGLEGEVVGVKVKGSRTGWIPMARNWGQNWHCNVNLQRQPLSFEVTISSGKTLTSYNVAPIKW QFGQTFEGKQFQLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 3 | 252 | 250 | 4.5E-145 | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 3 | 252 | 250 | 4.5E-145 | – | |
| Phobius | 15 | 21 | 7 | - | – | |
| Gene3D | 15 | 155 | 141 | 2.5E-35 | ||
| Phobius | 22 | 254 | 233 | - | – | |
| PRINTS | 26 | 41 | 16 | 3.2E-35 | ||
| SUPERFAMILY | 26 | 177 | 152 | 6.28E-43 | ||
| PRINTS | 44 | 62 | 19 | 3.2E-35 | ||
| ProSiteProfiles | 45 | 159 | 115 | 27.74 | ||
| PRINTS | 57 | 71 | 15 | 9.6E-52 | ||
| SMART | 62 | 149 | 88 | 4.1E-42 | ||
| Pfam | 63 | 149 | 87 | 2.2E-18 | ||
| PRINTS | 66 | 84 | 19 | 3.2E-35 | ||
| PRINTS | 84 | 95 | 12 | 9.6E-52 | ||
| PRINTS | 98 | 108 | 11 | 9.6E-52 | ||
| PRINTS | 117 | 134 | 18 | 9.6E-52 | ||
| PRINTS | 134 | 147 | 14 | 9.6E-52 | ||
| PRINTS | 142 | 158 | 17 | 3.2E-35 | ||
| SUPERFAMILY | 156 | 248 | 93 | 4.97E-31 | ||
| PRINTS | 158 | 170 | 13 | 9.6E-52 | ||
| Gene3D | 159 | 252 | 94 | 3.6E-22 | ||
| Pfam | 161 | 237 | 77 | 1.5E-23 | ||
| ProSiteProfiles | 169 | 248 | 80 | 20.705 | ||
| PRINTS | 170 | 191 | 22 | 9.6E-52 | ||
| PRINTS | 196 | 210 | 15 | 3.2E-35 | ||
| PRINTS | 205 | 226 | 22 | 9.6E-52 | ||
| PRINTS | 234 | 248 | 15 | 3.2E-35 | ||
| PRINTS | 234 | 250 | 17 | 9.6E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi3g1v0455600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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