Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0459500 |
| Transcript ID | LotjaGi3g1v0459500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated protein 4-2; TAIR: AT4G21450.1 PapD-like superfamily protein; Swiss-Prot: sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2; TrEMBL-Plants: tr|I3T8Y7|I3T8Y7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0459500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87415503..87417471) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGTGGTCGGTGAAAAAACAGGGTCTGATGTAAAAGTTCGGAGCCTTTGTAGCATGCCATTTTGGCAAACAACTCG TGCTTCTTCTTCTTCTGCTACAGGTTCTTCTATGCACAGTGTTCATCAGCAGAATCAAGTTGTTCAGTCTCTTGATAGAT CGAATCATCAACCTTCAAGCACTGTTTCTTCCTTGGCCAAGTCTCTTCTTCCTATATGGAAACGGCTACGCCTTGATCCT CCCAACAAGCTCTACTTTCCCTGTATACCTCTTAATATCTTGTTCTCTCTTTTTTTTGTGGATTTTTTTGATCATTTTCT GTTTGAGTTTTTGTTAGATTAGCCAATTCAAAGTGTGGTTTTTGTGTTTTGTTTTGATTTAATCTTTAATTGCCATTGAA TGGATTGTTCATGGTTATGAATATGATAACTAATGTACCCATTTGTGAGTTCTGCTTTTGTTATCAATAACATGTCCAAT TTGTGCAAGTTTTCTTATAATGGGCAGAGTAGAAAATCATGAATTGTTTAGGATTTTTCATTGAATGTTAGCTTTGGGTC CTGTCTGATTTAATGTGACTTTGTTTTGAAGATGAACCTGGTAAGCAAGTTCGAAGCGCCGTCGCAATTAAAAACACTTG CAAGTCTCATGTGGCCTTCAAGGTTTGGTATTTATAGCTACTACTGCTTATTTTTCAGAAAATGGTATTATTTGACACAT CATAACTATGTTATCATGCAACACAATATAAATTGGATATTGATTCTTGCTCCTCGTGGAACATTCGGATATTTTTGCAA CATTGGGGTTTTCTCTAAAATGGATTCATAATGTTAAGAGTTTTTTCTATAACTAGATGATGATATGAAGTGTAGTATGT TGAACAAGACCATCTTCAGATTTGAGTTTCACTGCATATATTTTATAGGATTAGGATTATGATTTATGAGCACTTCTATT GTTGTGCTTTTACTAAGCATTTATGTCAATGTTGTTGCTTATTCTATTTACCCTCTCTCAATGTTGCTACTCATGGTAAT ATTTTCTTTTTAGTTTCAAACAACTGCGCCCAAGAGTTGTTTTATGCGCCCTCCAGGAGGTATTCTTGCACCTGGTGAAA GTATTATTGCAACTGGTAATTATCATTGCATTTCTAGATTAGTTTTTGAGCAAAAGTGCTTGAATGCTTATAAGTTGGTG AATTTTACTACTAATTGTTCCATGTATTTGGCAGTGTTTAAGTTTGTCGAGCCACCGGATAACAATGAGAAACCAGTTGA TAAAAAAAGCAGGGTTAAGTTCAAAATCATGAGCTTAAAAGTAAAAGGAGAAATGGACTATGTACCAGAACTGGTAATGT ATAAATTGTCTTTTAAATGGTAATCTTCATTCTTCATCCATAAGGCATTCAAATACCAACCATAGTTGTGTCCTATAATC CTTCATGCAGTTTGATGAGCAAAGGGATCAAGTAGCAGTGGAGCAAATTTTGCGTGTGGTTTTTCTGGACCCTGAACGCC CTAGTCCTGTAAGACTAATAGCATGTTTCAATCTGTTTATTTTTTCTTAGAATCAATTGACACTTAGAAGCTACTCACAG CATGTACCATTTTGTGTGGAATGTTATACTTAATCTTATTATGAAAAATGGTTTCTCAAAGGCCATGGATAAGCTTAAAC AGCAACTGGCTGAGTCTGAGGCTACACTGGAAGCAAGAAAGAAGCCTAGAGAGGAGACAGGTCCTAGAATAGCTGGGGAA GGACTTGTTATAGATGAATGGGTCAGGCACATTTTTCATATCTTTCTTCCATTTTTAGTACACCTTATATGGTCTAGATG AACTGGTCTTATTTTATTTTATCTCATTGACATTCTTAGTTTATTTTATTTTGTTTGTTTGCTTTGTAGAAAGAGAGAAG AGAAAGGTACCTGGCCAAACAGCAGGTTGAAGGGGTTGAATCAATGTAA
CDS sequence (LotjaGi3g1v0459500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGGTCGGTGAAAAAACAGGGTCTGATGTAAAAGTTCGGAGCCTTTGTAGCATGCCATTTTGGCAAACAACTCG TGCTTCTTCTTCTTCTGCTACAGGTTCTTCTATGCACAGTGTTCATCAGCAGAATCAAGTTGTTCAGTCTCTTGATAGAT CGAATCATCAACCTTCAAGCACTGTTTCTTCCTTGGCCAAGTCTCTTCTTCCTATATGGAAACGGCTACGCCTTGATCCT CCCAACAAGCTCTACTTTCCCTATGAACCTGGTAAGCAAGTTCGAAGCGCCGTCGCAATTAAAAACACTTGCAAGTCTCA TGTGGCCTTCAAGTTTCAAACAACTGCGCCCAAGAGTTGTTTTATGCGCCCTCCAGGAGGTATTCTTGCACCTGGTGAAA GTATTATTGCAACTGTGTTTAAGTTTGTCGAGCCACCGGATAACAATGAGAAACCAGTTGATAAAAAAAGCAGGGTTAAG TTCAAAATCATGAGCTTAAAAGTAAAAGGAGAAATGGACTATGTACCAGAACTGTTTGATGAGCAAAGGGATCAAGTAGC AGTGGAGCAAATTTTGCGTGTGGTTTTTCTGGACCCTGAACGCCCTAGTCCTGCCATGGATAAGCTTAAACAGCAACTGG CTGAGTCTGAGGCTACACTGGAAGCAAGAAAGAAGCCTAGAGAGGAGACAGGTCCTAGAATAGCTGGGGAAGGACTTGTT ATAGATGAATGGAAAGAGAGAAGAGAAAGGTACCTGGCCAAACAGCAGGTTGAAGGGGTTGAATCAATGTAA
Protein sequence (LotjaGi3g1v0459500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVVGEKTGSDVKVRSLCSMPFWQTTRASSSSATGSSMHSVHQQNQVVQSLDRSNHQPSSTVSSLAKSLLPIWKRLRLDP PNKLYFPYEPGKQVRSAVAIKNTCKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFVEPPDNNEKPVDKKSRVK FKIMSLKVKGEMDYVPELFDEQRDQVAVEQILRVVFLDPERPSPAMDKLKQQLAESEATLEARKKPREETGPRIAGEGLV IDEWKERRERYLAKQQVEGVESM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 261 | 228 | 1.5E-129 | – | |
| PANTHER | 34 | 261 | 228 | 1.5E-129 | ||
| Gene3D | 72 | 201 | 130 | 1.3E-26 | ||
| ProSiteProfiles | 75 | 197 | 123 | 21.772 | ||
| SUPERFAMILY | 75 | 205 | 131 | 6.28E-33 | ||
| Pfam | 76 | 186 | 111 | 5.7E-29 | ||
| MobiDBLite | 212 | 235 | 24 | - | – | |
| MobiDBLite | 217 | 232 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
Expression pattern of LotjaGi3g1v0459500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…