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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016763
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We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.447s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1989070.1
n.a. PREDICTED: vesicle-associated protein 2-1-like [Cicer arietinum] gi|502160402|ref|XP_004511733.1| chr2 29731282 29736339 -
2 domain predictions
1 GO term
Lj2g3v1989070.2
n.a. PREDICTED: vesicle-associated protein 2-1-like [Cicer arietinum] gi|502160402|ref|XP_004511733.1| chr2 29731282 29736339 -
2 domain predictions
1 GO term
Lj2g3v2002030.1
n.a. PREDICTED: vesicle-associated protein 1-2-like [Glycine max] gi|356495613|ref|XP_003516669.1| chr2 30140410 30148703 +
3 domain predictions
1 GO term
Lj2g3v2002040.1
n.a. Disease resistance-like protein GS0-1 [Medicago truncatula] gi|357494437|ref|XP_003617507.1| chr2 30150966 30153029 +
2 domain predictions
1 GO term
Lj2g3v2002110.1
n.a. PREDICTED: vesicle-associated protein 1-1-like [Fragaria vesca subsp]. vesca] gi|470126951|ref|XP_004299443.1| chr2 30159890 30160593 +
2 domain predictions
1 GO term
Lj2g3v2002120.1
n.a. PREDICTED: vesicle-associated protein 1-2-like [Glycine max] gi|356495613|ref|XP_003516669.1| chr2 30160540 30164333 +
2 domain predictions
1 GO term
Lj3g3v1461470.1
n.a. PREDICTED: vesicle-associated protein 1-2-like [Glycine max] gi|356496332|ref|XP_003517022.1| chr3 18668455 18670814 +
3 domain predictions
1 GO term
Lj3g3v1461470.2
n.a. PREDICTED: vesicle-associated protein 1-2-like [Glycine max] gi|356496332|ref|XP_003517022.1| chr3 18668455 18672557 +
3 domain predictions
1 GO term
Lj3g3v2769350.1
n.a. PREDICTED: vesicle-associated protein 4-2-like [Glycine max] gi|356543790|ref|XP_003540343.1| chr3 34097317 34100931 +
2 domain predictions
1 GO term
Lj3g3v2873660.1
n.a. PREDICTED: vesicle-associated protein 4-2-like [Glycine max] gi|356517568|ref|XP_003527459.1| chr3 35391131 35393204 -
2 domain predictions
1 GO term
Lj4g3v0445340.1
n.a. Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|357475961|ref|XP_003608266.1| chr4 5749599 5753814 +
2 domain predictions
1 GO term
Lj4g3v2373750.1
n.a. Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] gi|357478585|ref|XP_003609578.1| chr4 32714377 32717732 -
3 domain predictions
1 GO term
Lj4g3v2373750.2
n.a. Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] gi|357478585|ref|XP_003609578.1| chr4 32715388 32717727 -
3 domain predictions
1 GO term
Lj5g3v1427790.1
n.a. PREDICTED: vesicle-associated protein 2-2-like [Glycine max] gi|356574914|ref|XP_003555588.1| chr5 21306245 21310719 +
2 domain predictions
1 GO term
Lj5g3v1427790.2
n.a. PREDICTED: vesicle-associated protein 2-2-like [Glycine max] gi|356574914|ref|XP_003555588.1| chr5 21306300 21308725 +
2 domain predictions
1 GO term
LotjaGi2g1v0419800.1
n.a. Vesicle-associated protein 1-1; TAIR: AT5G47180.1 Plant VAMP (vesicle-associated membrane protein) family protein; Swiss-Prot: sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1; TrEMBL-Plants: tr|I3SMW1|I3SMW1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0419800 LjG1.1_chr2 91803226 91809080 -
3 domain predictions
1 GO term
LotjaGi2g1v0419800.2
n.a. Vesicle-associated protein 1-1; TAIR: AT5G47180.1 Plant VAMP (vesicle-associated membrane protein) family protein; Swiss-Prot: sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1; TrEMBL-Plants: tr|I3SMW1|I3SMW1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0419800 LjG1.1_chr2 91803226 91809080 -
3 domain predictions
1 GO term
LotjaGi2g1v0424200.1
n.a. Vesicle-associated 1-1-like protein; TAIR: AT2G45140.1 plant VAP homolog 12; Swiss-Prot: sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2; TrEMBL-Plants: tr|I3S2M8|I3S2M8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0424200 LjG1.1_chr2 92215613 92224477 +
3 domain predictions
1 GO term
LotjaGi2g1v0424300.1
n.a. Vesicle-associated 1-1-like protein; TAIR: AT2G45140.1 plant VAP homolog 12; Swiss-Prot: sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2; TrEMBL-Plants: tr|I3SEQ0|I3SEQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0424300 LjG1.1_chr2 92225335 92239421 +
3 domain predictions
1 GO term
LotjaGi2g1v0424300.2
n.a. Vesicle-associated 1-1-like protein; TAIR: AT2G45140.1 plant VAP homolog 12; Swiss-Prot: sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2; TrEMBL-Plants: tr|I3SEQ0|I3SEQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0424300 LjG1.1_chr2 92235014 92238925 +
2 domain predictions
1 GO term
LotjaGi2g1v0424300.3
n.a. Vesicle-associated 1-1-like protein; TAIR: AT2G45140.1 plant VAP homolog 12; Swiss-Prot: sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2; TrEMBL-Plants: tr|I3SEQ0|I3SEQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0424300 LjG1.1_chr2 92235014 92238925 +
3 domain predictions
1 GO term
LotjaGi3g1v0206300.1
n.a. Vesicle-associated 1-1-like protein; TAIR: AT2G45140.1 plant VAP homolog 12; Swiss-Prot: sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2; TrEMBL-Plants: tr|K7K3P5|K7K3P5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0206300 LjG1.1_chr3 30235009 30239178 +
3 domain predictions
1 GO term
LotjaGi3g1v0439800.1
n.a. Vesicle-associated protein 4-2; TAIR: AT4G21450.1 PapD-like superfamily protein; Swiss-Prot: sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2; TrEMBL-Plants: tr|I3SHF4|I3SHF4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0439800 LjG1.1_chr3 85298064 85303720 +
2 domain predictions
1 GO term
LotjaGi3g1v0459500.1
n.a. Vesicle-associated protein 4-2; TAIR: AT4G21450.1 PapD-like superfamily protein; Swiss-Prot: sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2; TrEMBL-Plants: tr|I3T8Y7|I3T8Y7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0459500 LjG1.1_chr3 87412929 87417840 -
2 domain predictions
1 GO term
LotjaGi3g1v0459500.2
n.a. Vesicle-associated protein 4-2; TAIR: AT4G21450.1 PapD-like superfamily protein; Swiss-Prot: sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2; TrEMBL-Plants: tr|I3T8Y7|I3T8Y7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0459500 LjG1.1_chr3 87412929 87417840 -
2 domain predictions
1 GO term
LotjaGi3g1v0459500.3
n.a. Vesicle-associated protein 4-2; TAIR: AT4G21450.1 PapD-like superfamily protein; Swiss-Prot: sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2; TrEMBL-Plants: tr|I3T8Y7|I3T8Y7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0459500 LjG1.1_chr3 87415503 87417471 -
2 domain predictions
1 GO term
LotjaGi4g1v0048100.1
n.a. Vesicle-associated protein 4-2; TAIR: AT4G21450.1 PapD-like superfamily protein; Swiss-Prot: sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2; TrEMBL-Plants: tr|Q2HTV7|Q2HTV7_MEDTR Major sperm protein; Found in the gene: LotjaGi4g1v0048100 LjG1.1_chr4 5781667 5786907 +
2 domain predictions
1 GO term
LotjaGi4g1v0048100.2
n.a. Vesicle-associated protein 4-2; TAIR: AT4G21450.1 PapD-like superfamily protein; Swiss-Prot: sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2; TrEMBL-Plants: tr|Q2HTV7|Q2HTV7_MEDTR Major sperm protein; Found in the gene: LotjaGi4g1v0048100 LjG1.1_chr4 5781704 5786546 +
2 domain predictions
1 GO term
LotjaGi4g1v0346700.1
n.a. Vesicle-associated protein 1-2; TAIR: AT1G08820.1 vamp/synaptobrevin-associated protein 27-2; Swiss-Prot: sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2; TrEMBL-Plants: tr|C6THF6|C6THF6_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0346700 LjG1.1_chr4 72586472 72590050 -
3 domain predictions
1 GO term
LotjaGi5g1v0217200.1
n.a. Vesicle-associated protein 1-2; TAIR: AT1G08820.1 vamp/synaptobrevin-associated protein 27-2; Swiss-Prot: sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2; TrEMBL-Plants: tr|A0A0R0EF48|A0A0R0EF48_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0217200 LjG1.1_chr5 52333051 52338328 +
2 domain predictions
1 GO term