Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0520900 |
Transcript ID | LotjaGi3g1v0520900.2 |
Related isoforms 9 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|I3T7H2|I3T7H2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0520900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93718511..93719640) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCCATTGGCAAGCAACCATCATTGGTCCAAATGACTGCCCCTATTCTGGTGGAGTTTTCCTTGTGACCATTCATTT CCCTCCTGATTATCCCTTCAAACCTCCCAAGGTATGCACAAAAAACTTTTGCTGAACTTTCACACCCAATTTCTTCATTT CAGCTACTCCTTTGCAAGTGATTCTGGACAGGCAAAAAGTCTCTACCTTTTGCTATATGTTGTCTTCAATTATATATTTT TTGTAGTTTCCTAAGCTCGGGTAAGGACGAAGGTTGTGTTAAGTCTACGGCAGCAAAATAATTGTCATATCTTTCATAAA TGGGTCATGTGATCCATATAGCCGACTTCACCTCGTGAAATAAGACTTTTGTTGTTATTGTTGTTGTTGCTACTAATATA TACTATAGCTCTGAATCTAATTGATGGCTAGTATTAAAAACTATTTTGCAGGTTGCATTCAGGACCAAGGTATTCCATCC CAACATCAATAGCAATGGCAATATTTGCTTGGACATACTCAAAGAACAATGGAGCCCTGCTCTCACCATATCCAAGGTTA TGTGGATCACAATCTTCTCTGGCTTGGCTGCGGTCAATTTTTTATTCAGTCCCTGCAGTTAAGGGACCTCAGGCGTAGGG TGGAGATCGGATGGTTTCGATTTCAGTTCAATAAATCATATGCAAAATATATTCTCAAAATCTTAGTCGCCTGATTTTCA TCCAATGACTGAGATTCCTTAATTATAATTAATGACTGCAGCAAAAATTAACTGCACATAATCCATTTCCCTCATGCCAC ATACAATTAATTGTCACTTAACCTTTGTGTCTATCACTTCCACTTATTTATTACATAAAAACAAACATAAAAATTCAACA TGACAATCTCATGTGAAGTTTCAACATGAAAGGATCCTGATTAGATGCGATCAGTTTCTTTTTGCTTTATCTATATGCTG ATTGATTGAAAAAAATGATGATGCAGGTGCTTCTCTCTATATGTTCTCTGCTAACAGATCCAAATCCTGATGACCCTTTG GTGCCTGAAATTGCTCATATGTGCAAGACAGACAAAGTGAAGTATGAGTCCACTGCTAGAAGCTGGACCCAGAAGTATGC AATGGGATAA
CDS sequence (LotjaGi3g1v0520900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCATTGGCAAGCAACCATCATTGGTCCAAATGACTGCCCCTATTCTGGTGGAGTTTTCCTTGTGACCATTCATTT CCCTCCTGATTATCCCTTCAAACCTCCCAAGGTTGCATTCAGGACCAAGGTATTCCATCCCAACATCAATAGCAATGGCA ATATTTGCTTGGACATACTCAAAGAACAATGGAGCCCTGCTCTCACCATATCCAAGGTGCTTCTCTCTATATGTTCTCTG CTAACAGATCCAAATCCTGATGACCCTTTGGTGCCTGAAATTGCTCATATGTGCAAGACAGACAAAGTGAAGTATGAGTC CACTGCTAGAAGCTGGACCCAGAAGTATGCAATGGGATAA
Protein sequence (LotjaGi3g1v0520900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHWQATIIGPNDCPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL LTDPNPDDPLVPEIAHMCKTDKVKYESTARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 118 | 118 | 1.4E-81 | – | |
PANTHER | 1 | 118 | 118 | 1.4E-81 | – | |
SMART | 1 | 118 | 118 | 5.9E-52 | – | |
ProSiteProfiles | 1 | 107 | 107 | 40.868 | ||
Pfam | 1 | 112 | 112 | 4.4E-46 | ||
CDD | 1 | 113 | 113 | 7.83973E-59 | ||
SUPERFAMILY | 1 | 118 | 118 | 5.76E-54 | ||
Gene3D | 1 | 119 | 119 | 1.2E-60 | ||
ProSitePatterns | 45 | 60 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0520900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…