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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0520900 |
| Transcript ID | LotjaGi3g1v0520900.4 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|I3T7H2|I3T7H2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0520900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93718511..93719910) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATCCAAGAGAATACTGAAGGAGCTCAAGGACTTGCAGAGAGATCCACCAACTTCATGCAGTGCAGGTAAAAGAGA AATTTGTATTGTGTCATTTCATATTGTCTGTAACCAACCACACTATTTATGAAGCACACACGAATGTTACCTCTCAATTC GAGGTAAAATTATAAGTTATGAAAGTCTATTCATATTGCACTCAACCGATATCCAAACACACTTCGTGACATGCTTGTTA TGGTTGATTTCAGGCCCTGTGGGAGAGGACATGTTCCATTGGCAAGCAACCATCATTGGTCCAAATGACTGCCCCTATTC TGGTGGAGTTTTCCTTGTGACCATTCATTTCCCTCCTGATTATCCCTTCAAACCTCCCAAGGTATGCACAAAAAACTTTT GCTGAACTTTCACACCCAATTTCTTCATTTCAGCTACTCCTTTGCAAGTGATTCTGGACAGGCAAAAAGTCTCTACCTTT TGCTATATGTTGTCTTCAATTATATATTTTTTGTAGTTTCCTAAGCTCGGGTAAGGACGAAGGTTGTGTTAAGTCTACGG CAGCAAAATAATTGTCATATCTTTCATAAATGGGTCATGTGATCCATATAGCCGACTTCACCTCGTGAAATAAGACTTTT GTTGTTATTGTTGTTGTTGCTACTAATATATACTATAGCTCTGAATCTAATTGATGGCTAGTATTAAAAACTATTTTGCA GGTTGCATTCAGGACCAAGGTATTCCATCCCAACATCAATAGCAATGGCAATATTTGCTTGGACATACTCAAAGAACAAT GGAGCCCTGCTCTCACCATATCCAAGGTTATGTGGATCACAATCTTCTCTGGCTTGGCTGCGGTCAATTTTTTATTCAGT CCCTGCAGTTAAGGGACCTCAGGCGTAGGGTGGAGATCGGATGGTTTCGATTTCAGTTCAATAAATCATATGCAAAATAT ATTCTCAAAATCTTAGTCGCCTGATTTTCATCCAATGACTGAGATTCCTTAATTATAATTAATGACTGCAGCAAAAATTA ACTGCACATAATCCATTTCCCTCATGCCACATACAATTAATTGTCACTTAACCTTTGTGTCTATCACTTCCACTTATTTA TTACATAAAAACAAACATAAAAATTCAACATGACAATCTCATGTGAAGTTTCAACATGAAAGGATCCTGATTAGATGCGA TCAGTTTCTTTTTGCTTTATCTATATGCTGATTGATTGAAAAAAATGATGATGCAGGTGCTTCTCTCTATATGTTCTCTG CTAACAGATCCAAATCCTGATGACCCTTTGGTGCCTGAAATTGCTCATATGTGCAAGACAGACAAAGTGAAGTATGAGTC CACTGCTAGAAGCTGGACCCAGAAGTATGCAATGGGATAA
CDS sequence (LotjaGi3g1v0520900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTGCAGCACACACGAATGTTACCTCTCAATTCGAGGCCCTGTGGGAGAGGACATGTTCCATTGGCAAGCAACCAT CATTGGTCCAAATGACTGCCCCTATTCTGGTGGAGTTTTCCTTGTGACCATTCATTTCCCTCCTGATTATCCCTTCAAAC CTCCCAAGGTTGCATTCAGGACCAAGGTATTCCATCCCAACATCAATAGCAATGGCAATATTTGCTTGGACATACTCAAA GAACAATGGAGCCCTGCTCTCACCATATCCAAGGTGCTTCTCTCTATATGTTCTCTGCTAACAGATCCAAATCCTGATGA CCCTTTGGTGCCTGAAATTGCTCATATGTGCAAGACAGACAAAGTGAAGTATGAGTCCACTGCTAGAAGCTGGACCCAGA AGTATGCAATGGGATAA
Protein sequence (LotjaGi3g1v0520900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQCSTHECYLSIRGPVGEDMFHWQATIIGPNDCPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILK EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKVKYESTARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 138 | 137 | 2.8E-63 | ||
| SMART | 5 | 137 | 133 | 4.4E-57 | – | |
| PANTHER | 10 | 137 | 128 | 1.4E-86 | – | |
| PANTHER | 10 | 137 | 128 | 1.4E-86 | – | |
| SUPERFAMILY | 10 | 137 | 128 | 2.05E-56 | ||
| Pfam | 14 | 131 | 118 | 2.7E-47 | ||
| ProSiteProfiles | 14 | 126 | 113 | 40.921 | ||
| CDD | 15 | 132 | 118 | 3.90901E-62 | ||
| ProSitePatterns | 64 | 79 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0520900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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