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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0100100 |
Transcript ID | LotjaGi4g1v0100100.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Copper-transporting ATPase; TAIR: AT4G37270.1 heavy metal atpase 1; Swiss-Prot: sp|Q9M3H5|HMA1_ARATH Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic; TrEMBL-Plants: tr|O22498|O22498_SOYBN Putative cadmium-transporting ATPase; Found in the gene: LotjaGi4g1v0100100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13640518..13643610) extracted from Lotus japonicus Gifu genome v1.2.
ATTATGAGGTAGCTTGAGGGGCTATGTTAGAAATATATTATAAAACCATTCACGTGTCTTCTTCACCCAACAGTTTAAGC TTTTGGGATAGTTGATTCATGATAATTCTTTTATCTCTTGAGGAAGAAGAGCAATAAGTTTTCTTTCTTTTTTGTGTTTC TCACTGGCTTGCAAGTGGATATGATATGAACCTTTCAATTCAATTCTTGAATGGTCAGTAATTCCATCTCAAATGTATAA ATAAAGCATAATTATCTCTTTTAAATATTTATGCATTTTTTGTTCTGTAATATGAAATGCAGGGCTGTGGTTGACCATAG TGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTGACTGCTACTGTTAACA GCATTGAGGTACCCGCACCTCTCATCACCATTGGCATTGCCTGACCCATTACTTAAATATTTACTTTGCTTGACAAAGCC AAACATTATAATATAAACTACCATTCATTGTTAGTATCCTGAGCTCCTATTCCATGCATCTCTAAGAGACCTCCCATTGT TTCCTTGTACACTTCTTGAAGTTGCGTGTTTCATTATTTGGCCACTTTTTTCTTTGTATATTTAGTGCTAACTAATGATG GGACCCTTGAAGTGACATTTAATAAGATAAACTTCAGTATATACACATCTTCTTCCTGTGTAGTTTATCAAGCTTCATTT GTGAATGACGAGTTAAATGACTCAAATTAATTTTTGTTTTGTTATAGTCAGGAAACGGAGGTGCTAAACTATTGAAAGCA TCACTCGGGTCTGTAGACTTCATCACTTCATTTTGTCAATCTGAAGACGAATTAAAAAAGATTAAGGAAGCTGTTGATAC ATCTTCCTATGGAGGAGAATTTGTCCATGCTGCCCTTTCAGTTAATCAGAAGGTACTGTACTGCTAGCTACACTTCTTTT CTTGGGGGAGGGGTAGTGCTTTGAGCATACCCAAGTCTTTCAACTTCTAGGGCCTCTTTAATTTGAAATATTAAATTTGG TCCTGTTTTCTTTTCAATCCCTTTTTCCCAAACAAAACAGATTGAGCCTCAGTAAAATGATAATATGCTACTCTGTTTCA TTCTCAACAGGTTCCACCTCAACCTAACTGACTATCCGCTTGATGCAGGTAACATTGATTCATCTAGAGGACAGGCCTCG TCCAGGGGTTTTTAATGTTATTCAGGAGTTGCAAGATGAAGCAAAGCTTCGTGTGATGATGTTGACTGGTGATCATGAAT CTAGTGCAAAGAGAGTTGCAAGTGCCGTGGGCATCAATGTGTTTCATTGCAATCTGAAGCCCGAAGATAAGCTGAGTCAT GTAAAGGATATCTCAAGAGATATGGGTGAGTTCCTCCATTAGAGTTTTGTTTTAATCTTTTTTGTCTTTCATAACATGAT TTACTGTTGGACGGATTTCAGTGCTATATACATGTTTATAATATTTTTCTTTTTTAACTACACACTATTGATTTCTTTCC AATATAAGTTCCATGCCCACTCACTTCTAGATTCAACTGTATGAGGAAATTTTTCAGAACTGAACACGCTTCACGTCTGA CTCTTCTTTTATTGCACCTTTTTTATCAGTGCTGCAACTACACATTCTTCTATTTATCATGAGACTATTTTCTTAACCAG GCTCCGGCATGATATTGACTAAATTGAATTACATATTGTTGTACTCTTATGGCATTTTGTTTTTTCTCGTGACAGGGGGA GGCTTAATTATGGTTGGTGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGAATTGTTCTTGCACAACG TGCTAGTGCAACTGCCATAGCTGTTGCAGATGTATTGTTACTTCGAGAAAATATTTCTGCAGTGCCTTTTTGTATTGCCA AGTCTCGTCAAACAACTTCACTGGTATTTTATATCAACTGTTATGAGACTTCATTTCTTCATCACTTGGATGTTGTTGTC TTATATGTGAATGCTCATGCAGATTAAACAAAATGTGGCTCTGGCGTTGACCTCTATTATCATGGCTTCTCTTCCGTCAG TTTTAGGATTTGTGCCATTGTGGTTAACGGTATGAAACTCAACTGACTTCGATGCTGGATCTTGATACTATTTGCCAGTC ATGTTTTATTGTGGTTTTCTTTTGGCATTATGTCATCATGTAGTGAATGCCTTGAACGGAGTCTTGTTTTAAAAAAAAAA CTTGTGATCAAAATTGGGCAAACCACCAATTTCATCTCAATTGTGTCACTATTTTTCAACTTAGTCCTTTTACAAAATTC TGATGAAAAGTAGTCCACGAACTATCTCCGCATTCTTCACATTAGTCTTTGCTAAGGTAGTTTGGGAACTCACATGAACG GCAGGTACATAGTTCAGGTATTAATGTGAAAAATGGGAAATAGTTTGAGGACTACTTTTTGTGAGCATGTCGTATGAAGA CTAAATTGAAAGAAGATATTAACATTGGGGGAAAGATCTCGGTGATTTGCTCGATCAGAATTCACATGACCATTCTAGTA AAGGATGCGTATGGCTGTGGCCAAACCGGTTTTACTGAGAACAGTCCCCCTTTCTCTTTTGGGAAAAAAATATTATTCAG CTGATCTTGTTCATTGAGTTCTTGCTAATTATTACATACCTAAGATTAATATCAATTTTAAAACTAAAGCACCTGTTTGA TTTCAGAAAACATGTAAATGTTTTGCAACATTGTTGAAAAATATACAAATTCTTTTACTCATCCCCTAACAAAGTATTAT TCTTTGAGCCTCGCTGTGAAAATCTTCAAGCTTCCCCCTTAATTGCATGTCAAACCTTTTTGTTTGGTTTCTGTTTAATC AAGTCTCTGGTCTATCCTTTTACATGCATGCAGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCAAT ACGTGCTTTAAATGAACCATCTTGGTCCTGGAAGCAGGATGTATTAAATTTGATTACCGAGGTTAAATCTAAACTCCTAT CTCTGAGGACAAATATCACTGGCCCAAGCAGCATCACAACGGCAAAATTGTGA
CDS sequence (LotjaGi4g1v0100100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTTGAATACTTTCCTGGTAG AGGCCTGACTGCTACTGTTAACAGCATTGAGTCAGGAAACGGAGGTGCTAAACTATTGAAAGCATCACTCGGGTCTGTAG ACTTCATCACTTCATTTTGTCAATCTGAAGACGAATTAAAAAAGATTAAGGAAGCTGTTGATACATCTTCCTATGGAGGA GAATTTGTCCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATCTAGAGGACAGGCCTCGTCCAGGGGTTTT TAATGTTATTCAGGAGTTGCAAGATGAAGCAAAGCTTCGTGTGATGATGTTGACTGGTGATCATGAATCTAGTGCAAAGA GAGTTGCAAGTGCCGTGGGCATCAATGTGTTTCATTGCAATCTGAAGCCCGAAGATAAGCTGAGTCATGTAAAGGATATC TCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGG AATTGTTCTTGCACAACGTGCTAGTGCAACTGCCATAGCTGTTGCAGATGTATTGTTACTTCGAGAAAATATTTCTGCAG TGCCTTTTTGTATTGCCAAGTCTCGTCAAACAACTTCACTGATTAAACAAAATGTGGCTCTGGCGTTGACCTCTATTATC ATGGCTTCTCTTCCGTCAGTTTTAGGATTTGTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGT TTGTCTCAATTCAATACGTGCTTTAAATGAACCATCTTGGTCCTGGAAGCAGGATGTATTAAATTTGATTACCGAGGTTA AATCTAAACTCCTATCTCTGAGGACAAATATCACTGGCCCAAGCAGCATCACAACGGCAAAATTGTGA
Protein sequence (LotjaGi4g1v0100100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRAVVDHSEGKDLPSVSVESFEYFPGRGLTATVNSIESGNGGAKLLKASLGSVDFITSFCQSEDELKKIKEAVDTSSYGG EFVHAALSVNQKVTLIHLEDRPRPGVFNVIQELQDEAKLRVMMLTGDHESSAKRVASAVGINVFHCNLKPEDKLSHVKDI SRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSII MASLPSVLGFVPLWLTVLLHEGGTLLVCLNSIRALNEPSWSWKQDVLNLITEVKSKLLSLRTNITGPSSITTAKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 231 | 231 | - | – | |
PANTHER | 2 | 311 | 310 | 6.7E-142 | – | |
Gene3D | 2 | 101 | 100 | 1.5E-45 | ||
Pfam | 10 | 184 | 175 | 1.4E-16 | – | |
TIGRFAM | 66 | 253 | 188 | 9.3E-37 | ||
SUPERFAMILY | 91 | 271 | 181 | 1.95E-34 | ||
Gene3D | 102 | 222 | 121 | 1.5E-45 | ||
Phobius | 232 | 255 | 24 | - | – | |
TMHMM | 232 | 254 | 23 | - | – | |
Phobius | 256 | 315 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0100100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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