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LotjaGi4g1v0100100.3

Overview

Field Value
Gene ID LotjaGi4g1v0100100
Transcript ID LotjaGi4g1v0100100.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Copper-transporting ATPase; TAIR: AT4G37270.1 heavy metal atpase 1; Swiss-Prot: sp|Q9M3H5|HMA1_ARATH Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic; TrEMBL-Plants: tr|O22498|O22498_SOYBN Putative cadmium-transporting ATPase; Found in the gene: LotjaGi4g1v0100100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:13640518..13643610) extracted from Lotus japonicus Gifu genome v1.2.

ATTATGAGGTAGCTTGAGGGGCTATGTTAGAAATATATTATAAAACCATTCACGTGTCTTCTTCACCCAACAGTTTAAGC TTTTGGGATAGTTGATTCATGATAATTCTTTTATCTCTTGAGGAAGAAGAGCAATAAGTTTTCTTTCTTTTTTGTGTTTC TCACTGGCTTGCAAGTGGATATGATATGAACCTTTCAATTCAATTCTTGAATGGTCAGTAATTCCATCTCAAATGTATAA ATAAAGCATAATTATCTCTTTTAAATATTTATGCATTTTTTGTTCTGTAATATGAAATGCAGGGCTGTGGTTGACCATAG TGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTGACTGCTACTGTTAACA GCATTGAGGTACCCGCACCTCTCATCACCATTGGCATTGCCTGACCCATTACTTAAATATTTACTTTGCTTGACAAAGCC AAACATTATAATATAAACTACCATTCATTGTTAGTATCCTGAGCTCCTATTCCATGCATCTCTAAGAGACCTCCCATTGT TTCCTTGTACACTTCTTGAAGTTGCGTGTTTCATTATTTGGCCACTTTTTTCTTTGTATATTTAGTGCTAACTAATGATG GGACCCTTGAAGTGACATTTAATAAGATAAACTTCAGTATATACACATCTTCTTCCTGTGTAGTTTATCAAGCTTCATTT GTGAATGACGAGTTAAATGACTCAAATTAATTTTTGTTTTGTTATAGTCAGGAAACGGAGGTGCTAAACTATTGAAAGCA TCACTCGGGTCTGTAGACTTCATCACTTCATTTTGTCAATCTGAAGACGAATTAAAAAAGATTAAGGAAGCTGTTGATAC ATCTTCCTATGGAGGAGAATTTGTCCATGCTGCCCTTTCAGTTAATCAGAAGGTACTGTACTGCTAGCTACACTTCTTTT CTTGGGGGAGGGGTAGTGCTTTGAGCATACCCAAGTCTTTCAACTTCTAGGGCCTCTTTAATTTGAAATATTAAATTTGG TCCTGTTTTCTTTTCAATCCCTTTTTCCCAAACAAAACAGATTGAGCCTCAGTAAAATGATAATATGCTACTCTGTTTCA TTCTCAACAGGTTCCACCTCAACCTAACTGACTATCCGCTTGATGCAGGTAACATTGATTCATCTAGAGGACAGGCCTCG TCCAGGGGTTTTTAATGTTATTCAGGAGTTGCAAGATGAAGCAAAGCTTCGTGTGATGATGTTGACTGGTGATCATGAAT CTAGTGCAAAGAGAGTTGCAAGTGCCGTGGGCATCAATGTGTTTCATTGCAATCTGAAGCCCGAAGATAAGCTGAGTCAT GTAAAGGATATCTCAAGAGATATGGGTGAGTTCCTCCATTAGAGTTTTGTTTTAATCTTTTTTGTCTTTCATAACATGAT TTACTGTTGGACGGATTTCAGTGCTATATACATGTTTATAATATTTTTCTTTTTTAACTACACACTATTGATTTCTTTCC AATATAAGTTCCATGCCCACTCACTTCTAGATTCAACTGTATGAGGAAATTTTTCAGAACTGAACACGCTTCACGTCTGA CTCTTCTTTTATTGCACCTTTTTTATCAGTGCTGCAACTACACATTCTTCTATTTATCATGAGACTATTTTCTTAACCAG GCTCCGGCATGATATTGACTAAATTGAATTACATATTGTTGTACTCTTATGGCATTTTGTTTTTTCTCGTGACAGGGGGA GGCTTAATTATGGTTGGTGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGAATTGTTCTTGCACAACG TGCTAGTGCAACTGCCATAGCTGTTGCAGATGTATTGTTACTTCGAGAAAATATTTCTGCAGTGCCTTTTTGTATTGCCA AGTCTCGTCAAACAACTTCACTGGTATTTTATATCAACTGTTATGAGACTTCATTTCTTCATCACTTGGATGTTGTTGTC TTATATGTGAATGCTCATGCAGATTAAACAAAATGTGGCTCTGGCGTTGACCTCTATTATCATGGCTTCTCTTCCGTCAG TTTTAGGATTTGTGCCATTGTGGTTAACGGTATGAAACTCAACTGACTTCGATGCTGGATCTTGATACTATTTGCCAGTC ATGTTTTATTGTGGTTTTCTTTTGGCATTATGTCATCATGTAGTGAATGCCTTGAACGGAGTCTTGTTTTAAAAAAAAAA CTTGTGATCAAAATTGGGCAAACCACCAATTTCATCTCAATTGTGTCACTATTTTTCAACTTAGTCCTTTTACAAAATTC TGATGAAAAGTAGTCCACGAACTATCTCCGCATTCTTCACATTAGTCTTTGCTAAGGTAGTTTGGGAACTCACATGAACG GCAGGTACATAGTTCAGGTATTAATGTGAAAAATGGGAAATAGTTTGAGGACTACTTTTTGTGAGCATGTCGTATGAAGA CTAAATTGAAAGAAGATATTAACATTGGGGGAAAGATCTCGGTGATTTGCTCGATCAGAATTCACATGACCATTCTAGTA AAGGATGCGTATGGCTGTGGCCAAACCGGTTTTACTGAGAACAGTCCCCCTTTCTCTTTTGGGAAAAAAATATTATTCAG CTGATCTTGTTCATTGAGTTCTTGCTAATTATTACATACCTAAGATTAATATCAATTTTAAAACTAAAGCACCTGTTTGA TTTCAGAAAACATGTAAATGTTTTGCAACATTGTTGAAAAATATACAAATTCTTTTACTCATCCCCTAACAAAGTATTAT TCTTTGAGCCTCGCTGTGAAAATCTTCAAGCTTCCCCCTTAATTGCATGTCAAACCTTTTTGTTTGGTTTCTGTTTAATC AAGTCTCTGGTCTATCCTTTTACATGCATGCAGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCAAT ACGTGCTTTAAATGAACCATCTTGGTCCTGGAAGCAGGATGTATTAAATTTGATTACCGAGGTTAAATCTAAACTCCTAT CTCTGAGGACAAATATCACTGGCCCAAGCAGCATCACAACGGCAAAATTGTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0100100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTTGAATACTTTCCTGGTAG AGGCCTGACTGCTACTGTTAACAGCATTGAGTCAGGAAACGGAGGTGCTAAACTATTGAAAGCATCACTCGGGTCTGTAG ACTTCATCACTTCATTTTGTCAATCTGAAGACGAATTAAAAAAGATTAAGGAAGCTGTTGATACATCTTCCTATGGAGGA GAATTTGTCCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATCTAGAGGACAGGCCTCGTCCAGGGGTTTT TAATGTTATTCAGGAGTTGCAAGATGAAGCAAAGCTTCGTGTGATGATGTTGACTGGTGATCATGAATCTAGTGCAAAGA GAGTTGCAAGTGCCGTGGGCATCAATGTGTTTCATTGCAATCTGAAGCCCGAAGATAAGCTGAGTCATGTAAAGGATATC TCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGG AATTGTTCTTGCACAACGTGCTAGTGCAACTGCCATAGCTGTTGCAGATGTATTGTTACTTCGAGAAAATATTTCTGCAG TGCCTTTTTGTATTGCCAAGTCTCGTCAAACAACTTCACTGATTAAACAAAATGTGGCTCTGGCGTTGACCTCTATTATC ATGGCTTCTCTTCCGTCAGTTTTAGGATTTGTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGT TTGTCTCAATTCAATACGTGCTTTAAATGAACCATCTTGGTCCTGGAAGCAGGATGTATTAAATTTGATTACCGAGGTTA AATCTAAACTCCTATCTCTGAGGACAAATATCACTGGCCCAAGCAGCATCACAACGGCAAAATTGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0100100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRAVVDHSEGKDLPSVSVESFEYFPGRGLTATVNSIESGNGGAKLLKASLGSVDFITSFCQSEDELKKIKEAVDTSSYGG EFVHAALSVNQKVTLIHLEDRPRPGVFNVIQELQDEAKLRVMMLTGDHESSAKRVASAVGINVFHCNLKPEDKLSHVKDI SRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSII MASLPSVLGFVPLWLTVLLHEGGTLLVCLNSIRALNEPSWSWKQDVLNLITEVKSKLLSLRTNITGPSSITTAKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 231 231 - –
PANTHER
PTHR43079
2 311 310 6.7E-142 –
Gene3D
G3DSA:3.40.1110.10
2 101 100 1.5E-45
IPR023299
Pfam
PF00702
10 184 175 1.4E-16 –
TIGRFAM
TIGR01494
66 253 188 9.3E-37
IPR001757
SUPERFAMILY
SSF56784
91 271 181 1.95E-34
IPR036412
Gene3D
G3DSA:3.40.50.1000
102 222 121 1.5E-45
IPR023214
Phobius
TRANSMEMBRANE
232 255 24 - –
TMHMM
TMhelix
232 254 23 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
256 315 60 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0100100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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