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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0101600 |
| Transcript ID | LotjaGi4g1v0101600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA-dihydrouridine synthase-like protein; TAIR: AT5G67220.1 FMN-linked oxidoreductases superfamily protein; Swiss-Prot: sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD](P)(+)]-like; TrEMBL-Plants: tr|I1K265|I1K265_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0101600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13917662..13921133) extracted from Lotus japonicus Gifu genome v1.2.
CATCCACAACCGCAACCATTCTCATCTCGCCGCAAAACCTCATCCTCTAATGGCCCAAACCCCACCATCTCCGGATCCAA ACTCGCCCCAACAAACCGACAACGACGACCACCAACAACCACCCTTTTCACCGCCCAGAAACCTCGCCGGAGAAACCCAG GTGGAGCGCGCGTGGGCTCACTGGACCAAATTGGGCCGACCCAAGTTTCTAGTTGCCCCCATGGTTGACAATTCGGAGCT ACCGTTTCGAATGCTGTGTCGCAAGTATGGTGCTGAGGGTGCATACACCCCTATGCTGCACTCGCGGATATTCACCGAGA CTGAGAAGTACAGGAAGGAAGAGTTCACAACTTGCAAGGTAGCATTTGCGTGTTCTTCTACTTCGTTGTTATTGTCATAG TTTTTTTTGTTACAAGTCCCTCATTGGCTAGAAATAGAGCATAGATAGCCTTTATAAGGGTAGTGCAAACCTCAACTCTT GAGCTAGCTTTTGTAGTTGAGTATAGGCCTCCCAATTTCTAATAGTTTTGTTTGTTGTTTTGAAAGTTGTGAATTTGGGA GTGATTGCAGGAGGATCGACCACTGTTTGTTCAATTCTGTGCTAATGACCCAGATGTGTTGTTGGAAGCTGCACGCAAGG TGGAGCCTTATTGCGATTATGTTGATATTAATCTTGGGTAATGTGATATGTATTATTTTGCATTTGCTCAGAATCTGTTG AATATCTTTTTTGTGCTTGCCTAATTAGCGTGACGATAATATCGAATGGAAATTGAAATGAATGAGTGCTTAGTGGTGAG TGTTGTTGATAGGACTTTACTAATCACAATGTAATTGTGGGTTTAGAGTGGAATTCAAAATTAGAACTCTCATAATGAGT ACATGATGTTTTAAGGATCAGTTGCTTGTGATTAAGATACTAGTTACTGTACGATAATTCCTCCGTGCTCTAAGAAAACT TTCTTTTTTTGTTTAGTAAGTACCATTTAATGTGTATTACTATTATCTCACTTATACATTGAAAATATTGAAGTGGGGCA CACGGATGGACGGGTAGCTATGGAGGTACATGTTAAATAGTAGACTTAAATATGTGTTTTGTTCGACTTTGATCCCTCTC TTTGGCAAATAGACATTTGTAAGTCCTAAACACCACTTAAAGTGAGGTGGTTATGCACTCCCTTGCTCACATGTTCAAGT CGTATTTTCGTGGCCATTCTCAGAAACTCAGTAGACTTCAAGATAAAATCACCATTAAACACAAACCAATCCCTGAAAAC CCTTAAGAAGTAGAACCGAAAATTATACTCACAACTTCCTTAGTCCATGTCTTGCACATGTTTCTCAAATAAAGGGTATC ACTGTCTATATCTCTGCAAGTTTAGCTTCCAGAGTACTGGTCTTGACTGCTTCGATGCTTGAAACCTTAGCACTGTCAAC CAAATTTGAAGCTGAGGTATCAGATTCAGGTAGAGAAGATAGTGATGCATGTGAGAAGACACTCTCTGAGTCATCCAAAG TAGCAGACTTGGAGTCTGATACAGAAGCTGCAGCAGAAGAAACGCAGTAGTTGGGGCTATTCTTTTCTAGGGCAGTCGTA GTTTCAATAGAAACGACAACATTGTTCTTGTTCGTCTCATCAGATAGAACCTTAGACATAGTTTCAAATTCAAGCCTTTT GTTCTCATAGGCTTTGGAAAGCCTCTTCTGTGGTGTTGTAAGTACCCAGCCATAGATGTGCACCCTTGAACGGGTCACGA ATCTCTGAAGCACATTTGCTCCATTTCCTCACTCGAACACTTTTGTATTTGCTAAATTGAAGTATTGAACCCTTGAACTG TGGTTGTCTCTTCATTGAAGGGGTTTTGGCTGTAACCCTCTTCTTGTTTAGTCTCTTGGTTGTTTGAGCCACAATGGTGC CACTTAAGGTTAGGGTTCAACAATTGGGGCTAAATCATTTCCGCATGGCAGCCAGCCAGCCACATAGGGTTTTAATTTTT TTTGTGAATAGGCACGGAAACCCACATTATATAACTTAAAATGTGAGTAGGGGAGTGCATTGTCACCTCATCATTTAAAT AGTGTTGAAGGCTTAAATATGTATATTTCCAAATTCCAAAAAAGAGGGACCAAAGTCAAACAAAAAAAGGAAGGGCCAAA CCCAATAACTTCTCACAATACAAGTACCAAAATCATATTTTAGCCTGAATAGTATAAAACTAATTTGAGTTCTTAAGATT TTCTCGTCACTATAACTTGATGTAGCCATTTTGGATGTTACCTCCTTGATAATTGTAATTAAAATTTGACAAAAGTGCAC TTGTTAAAATTTCAAAATTACTTTCCATGTATTCAGTGTTATGTTTTGTAATAAACAGTTAACAGTTTCTATTTCTTGAT TATTTAGACAATGCACATGAGGCACTATTTATCAAGGCATTTAAGATTTTGATGGATTTATTTTTTGTGATTCTCTAGGT GTCCTCAGCGCATTGCTAAACGAGGATATTATGGAGCCTTCTTGATGGATAACCTTCCTCTTGTGAAATCTCTCGTGGAA AATTTGGCTCTCAACCTGCAAGTTCCTGTTTCGTGCAAGATTAGGCTCTTTCCGAATTTAGAGGACACTTTGAAGTATGC TAGGATGCTTGAGGAGGCGGGTTGTTTTCTTTTAGCTGTTCATGGGAGGACAAGGGATGAGAAGGATGGGAAGAAATTTC GAGCTGACTGGAAAGCCATCAAGGCTGTGAAGGATGCAGTTAGAATCCCAGTCCTCGCGAATGGGAACATAAGGCACGTG GATGATGTTAGAGACTGTTTGGAAGAGACCGGTGTCGAAGGTGTGCTCTCTGCTGAGACTCTGCTTGAAAACCCAGCACT CTTTGCTGGATTTCGAACTGCTGAATGGGTGTCCGGCAGCGAAGGAACCATTGTGGATAGTGAAGGAACCATTGTGGATG GAAGGCTGGATCAGGCAGATCTAGTGATAGAGTATTTGAAACTTTGTGAAAAGTACCCTGTGCCATGGAGAATGATTCGC TCTCATGTTCATAAAATGTTGGGAGACTGGTTCAGCCTTCAGCCTCACATCAGGGAGGAGCTTAACCAACAATCTAAACT GACATTCGAGTTTCTTTATGACATGGTGGATCGGCTTAGGGCTACAGGTACAAGAATCCCACTTTATCTCAAAGATGACC GGGTGGAAACGCTAAAGTAGACAGTTACGCAGGTTTTACACAGCAGAACACCAACATTTGGGGTTCAAATTTAAACCAGA ACCAGAATGAAATTATTTATCTTGTGTTAAAGGTGAGGGTGCCTCGAGGTAAAGCCAGCTTGAATCACATGATTTAGATA CAATTTTGTAGCTATTAGAAGTGAGAATTACTAAAATTACTAATCTCTCGTGTTGTATTTTACTTCATTCTTATGGCAAT TGCCTATTGGCAGTGTTGTACAAGTGTGTTAA
CDS sequence (LotjaGi4g1v0101600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCAAACCCCACCATCTCCGGATCCAAACTCGCCCCAACAAACCGACAACGACGACCACCAACAACCACCCTTTTC ACCGCCCAGAAACCTCGCCGGAGAAACCCAGGTGGAGCGCGCGTGGGCTCACTGGACCAAATTGGGCCGACCCAAGTTTC TAGTTGCCCCCATGGTTGACAATTCGGAGCTACCGTTTCGAATGCTGTGTCGCAAGTATGGTGCTGAGGGTGCATACACC CCTATGCTGCACTCGCGGATATTCACCGAGACTGAGAAGTACAGGAAGGAAGAGTTCACAACTTGCAAGGAGGATCGACC ACTGTTTGTTCAATTCTGTGCTAATGACCCAGATGTGTTGTTGGAAGCTGCACGCAAGGTGGAGCCTTATTGCGATTATG TTGATATTAATCTTGGGTGTCCTCAGCGCATTGCTAAACGAGGATATTATGGAGCCTTCTTGATGGATAACCTTCCTCTT GTGAAATCTCTCGTGGAAAATTTGGCTCTCAACCTGCAAGTTCCTGTTTCGTGCAAGATTAGGCTCTTTCCGAATTTAGA GGACACTTTGAAGTATGCTAGGATGCTTGAGGAGGCGGGTTGTTTTCTTTTAGCTGTTCATGGGAGGACAAGGGATGAGA AGGATGGGAAGAAATTTCGAGCTGACTGGAAAGCCATCAAGGCTGTGAAGGATGCAGTTAGAATCCCAGTCCTCGCGAAT GGGAACATAAGGCACGTGGATGATGTTAGAGACTGTTTGGAAGAGACCGGTGTCGAAGGTGTGCTCTCTGCTGAGACTCT GCTTGAAAACCCAGCACTCTTTGCTGGATTTCGAACTGCTGAATGGGTGTCCGGCAGCGAAGGAACCATTGTGGATAGTG AAGGAACCATTGTGGATGGAAGGCTGGATCAGGCAGATCTAGTGATAGAGTATTTGAAACTTTGTGAAAAGTACCCTGTG CCATGGAGAATGATTCGCTCTCATGTTCATAAAATGTTGGGAGACTGGTTCAGCCTTCAGCCTCACATCAGGGAGGAGCT TAACCAACAATCTAAACTGACATTCGAGTTTCTTTATGACATGGTGGATCGGCTTAGGGCTACAGGTACAAGAATCCCAC TTTATCTCAAAGATGACCGGGTGGAAACGCTAAAGTAG
Protein sequence (LotjaGi4g1v0101600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQTPPSPDPNSPQQTDNDDHQQPPFSPPRNLAGETQVERAWAHWTKLGRPKFLVAPMVDNSELPFRMLCRKYGAEGAYT PMLHSRIFTETEKYRKEEFTTCKEDRPLFVQFCANDPDVLLEAARKVEPYCDYVDINLGCPQRIAKRGYYGAFLMDNLPL VKSLVENLALNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCFLLAVHGRTRDEKDGKKFRADWKAIKAVKDAVRIPVLAN GNIRHVDDVRDCLEETGVEGVLSAETLLENPALFAGFRTAEWVSGSEGTIVDSEGTIVDGRLDQADLVIEYLKLCEKYPV PWRMIRSHVHKMLGDWFSLQPHIREELNQQSKLTFEFLYDMVDRLRATGTRIPLYLKDDRVETLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 21 | 382 | 362 | 1.1E-202 | – | |
| PANTHER | 21 | 382 | 362 | 1.1E-202 | – | |
| Gene3D | 50 | 283 | 234 | 3.9E-70 | ||
| SUPERFAMILY | 51 | 335 | 285 | 6.41E-69 | – | |
| CDD | 52 | 282 | 231 | 1.04239E-101 | ||
| Pfam | 55 | 352 | 298 | 1.5E-71 | ||
| ProSitePatterns | 134 | 152 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. | ||
| Molecular function | TRNA dihydrouridine synthase activity | Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0101600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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