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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0129500 |
| Transcript ID | LotjaGi4g1v0129500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|A0A0B2PG91|A0A0B2PG91_GLYSO 26S proteasome non-ATPase regulatory subunit 4; Found in the gene: LotjaGi4g1v0129500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18948606..18956685) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCAAGACACATCGAAATGCACGAGAGACCAAATTGTCCTAGCCTGAGAGCCGTCACAAAGGCGGTGGGTGACAAACA AGCACTAAACACTTAAGCGGGACCTTCAGTTAGGAATCTCATTTGCACAATCGCGTTAACTAAAGAAAAAAAAAAGAAAA ATTAAACGACTAACAAGAAAAGAGAAATAAAGAAGAGTTAGCCTCCTTTCGCAAGTAACCTGAGTTTCTCTAATCTCTCT CCTTCCCTCCGACAGAACCAGTGCTTTCTCTTCCACTCTCATATTCGATCTCTTCTCTTCTCAACTCTCCAACCATGGTG CTCGAGGTAACCCTAAATTTCTCCTTCGTCAACGACCTCACCGTGCCACGAAGAATCCCTCCTTTCTTCTCCTTGTTCAT CTGGCCAATTAGGGTTTTTATTTTTCATGCTGTTACTGCAACAATTTCTCATAGCGTAATCGTTTTTTGATAGGCGACGA TGATCTGTATTGACAATTCTGAATGGATGCGTAATGGGGACTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCTGTC AATCTTATTTGTGGTGCTAAAACCCAGGTTGATTGCGATTTTTCAGTCATCTTTTCAATGATGTTGTATTTGAGAATTGG ATTTTACATTTAGTTTGAATTGTGGTGATTGCACGGGTTCAGTTATGCTCATGAATTTTTGTTTTTTTGTTTGGTGATTC AGTCTAATCCTGAGAATACGGTTGGAGTTCTCACGATGGCGGGGAAGGGTGTTCGTGTTTTGGTCACCCCTACCAGTGAT TTGGGAAAGATCTTAGCTTGTATGCATGGTCAGTTTCTATTTCTTGATATATTTGTTTTCCTTTTCCTTATGATTTAAGT ACTTGCCCTTGCGAATGTGCCATAGTGGGGGGAATTTTTGGGATGAATGGATTGAATTTGATTGCCTTGTAGTGTTGCCA GTGTAAGCATACTGAGATGAAATCTGTATATTTACTATATTAAGTTTTATTGATTAATGCTCGGTTTTGCGAGTAATTAT GTGGAAGCTCTTAGGTTGCTGGAACTTGTCAGTTCACAAGCTATTAGTGAGATTAAGCTTTCATGTAACTCATTCTCATA AATGTTGATCAAAGGCAACAAGTTTGCAATGTGTTATTCTGACATATATCTTATTGTTGGAATTGAATTCTTCTGTTCGT GAGAGTTTATGTAATTTTCTCACTTTTCTTCTTAATTTAGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGCAT TCAGGTGGCACAGTTAGCTCTTAAGCATCGGCAGAATAAGAAACAGCAGCAAAGGATTATTGTCTTTACTGGGAGGTATG AACAGCTATTCTTTTCAGTTTTATTTTGATGTTTTCATTTGCACCTGTTTCTCTCCATTTTTATCTCATTCTGTGTTTTT TAGTCCTATCAAGCACGAGAAGAAAATGTTGGAGATGATTGGGCGAAAGTTGAAAAAGAATAGCGTTGCACTTGACATTG TCAATTTTGGTGAAGAAGACGAGGGAAAGACAGAGAAGCTGGATGCACTCCTTGCAGCCGTTAATAATAATGATACCAGC CGCATGGCTCATGTTCCACCTGGTCCAAATGCTCTATCTGATGTACTTATAAGGTTTGTGAGTTCAATTTCATCTTTTGT GCTTTTTCAATGTACTTCCTTTCTATTCAGTATTCCCATTTGAACTAGAATTTCTGCTTCCGTAAAAGCATTAGCTGTAA AATGCAGAGAAGTTCTATCTTTGCTGTTTCTACTTGATTCTGCCCACTTGTATTCTAAAAGCTCAATAGGAGAGTTTAGA CTTTGGAATCTTGTGCATTTTATTTTCTTGGTTGTTTACTCATTCCTCAAATAGCAATTAACTCTTCTTTGAGAAACACA TTCTGAAGTCCAAAGCCCCTCAGAGTCAGAGGTCAAATCTTTTGTTTGAATAATCCATTTTGTACAGATCACAGATCACA TGCCTCTGTCCTCTGTGTATGTGTGTCTTGCGCAATTCAAGTTCCAAAACAATGAGTCATTTATTTGAGCTGCAAGGAAG CAGCTTCTTCTCTGGAAGAAACTTCTTTGTTTTTTTATCTGAAATCCTCAAGGAGCAATGGTTTTGTCCTTCTGCTTTTC CACAGTTTCTGTTGGTTTGATAGAGAGCTTTTGATACCAAGGAGGAGGCCTAAATTCTATGGCTTTATGCAGTGACTCTT TGCAATTGTTTGTTTGACTTAATTAAAATGAACAGAAATATTTATCAGGACTTATTAGTGTTCCCTTGCAGCTAAATATA CTGTGGGACATATTGATATTTTAGGAGCAATTTGGTGTTTGGCCCATGAATGTTTCCATCTTAAACTTGCGGAGCGATTG GGGAACCCTGTTGCTTTCTTAATATTTTTTCTCTTATCCTTGTTTCTCACTTGTATTTATTTGTTTTACCTTTTAGAGGA TTCCTTATCCTTGCTTCTGTAATTACTTTCTTTCTCTGCAATCAAATGATTTTTAATTGATAAAAGCCTTCTGGGATAAT TAAGTAACTTTGCTTTGTGGTAGTACACCAATTTTTACTGGTGATGGAGAGGGTGGAAGTGGTTTTGCAGCAGCTGCTGC TGCAGCAGCAGCAGCAGGTGGTGTATCTGGATATGACTTTGGCGTGGATCCGAACTTGGACCCGGAATTGGCTCTTGCTC TAAGAGTTTCAATGGAAGAGGAGAGGGCCCGACAGGAAGCAGCTGCAAAGAAGGCTGCAGAGGATGCTTCCAAGGAGAAT GGTGGTGAGCAGCAAGCCAGCTCGCAGGATGCAGCCATGATTGAGCGTGCTAGTGAAGAAACTTCAGAAGCTGCGACTAA GACAAATGATATGATGGTTGGTGTAATTTGTTGATTTAGCCGTGTTCATTTCTTGTTTGTCGTATGGCTTGTTTGGATTA TAAGAACAATTATCTATATATATGATTGACTCATTCTGACATGCTACCATCTGCATTGATTGTGATGACCTGTTAGTTAT CACATACTTTATGGAGGTGTTGCATCCCATAACTAACCTTGGAATAGTTGATTTAATATGTGTCTACGTGTGTGCGTGCA TACAGACACACACACACACATAGACATCACATAGATGATCCATGGCATGGAGATTTAACAAGGGTTTACATGGGTTGTTG ATTCCGTAACACGACCCTCCTCCAGTTATGTAATACACATAGGAAGATTTAAAAGATAGACTAGACGGAGGACAGTCTAA TAGTTAGAGCCTTAGAGGTATGGGGATGGGGATATCAAGGTAAACTATAGGTCAAACTATCAAGTTAAGAGAACTTTGAA TTCCAGTTATCTACATAATTATGCATGATTAATGACAGAATATTGTGGCGTTGTTTGATTCATGTAATTGACCTCACCTA ATAGGAAGAAAAGGCTTCCGTTGTTGTTAATGATACTTTAGGAGTAACTCTTGCCGAGTTACTCCACTTTGTAACTTCTC ATGTAATATGAATTTAGAAAATTCTGTTGAATTATGTGATATTAACGTGATAATTATTTATGCCAAATTTTAGTTAAATC TGACATTCACACACACGCGCACACATATATATAAATTCATATTCTATAATTTTATTTAAGCAGACTCCTGGAGTAAGTGG ATCCTAATCCATGTGTGCGTACACACACACATAGTATATATATTGCGTCTACCTCCGTTGCTTTTTTATCAGTTTTGTTT GTATCACGTTTATTCTTCCTGTAAACCGGTATCAGGCATAGTACTTGTTCTGTATGAACTGACTTTCACATTGAAATAGG ACGATGAGAATGCTCTACTACAGCAGGCCCTTGCTATGTCAATGGATGATCCTGTGATTAACAAAGATATGAGAGATACA GATATGTCTGAAGCAGCTGCAGATGATCCTGAGTTAGCTTTAGGTGAGTTTCATGTTAATCATTTTTCATTAAGACTTCA GTGGGCGCTTTGCAATTCATCCTAGTCTTGTCATCTAAGGGCTTTCTTGTTATGTTGGTTGGTGAGTTATTGGATTATGG AATTAAGAAAATTTCTGTTTTATTTTGGTTTGGCAATAGGGATAGAGAGTTTTCTAAGTCCCTTTGGTTTGGTTTTGAAG TGGGTATTTATGATCTAGAAGGTATTCAATTCATTACATAGGGATTGGTTTGAATGGATTTTATGCATTTTCTCATATAA CTTGTGCTTTTCAAAGGCTTTGGGTTTTTTTTTTCTTGTGGTAAGCTTTGTTAAATCATGAATAAATACTTTTTCTTCTC TGAGAAGTTATGCTGATTATGAAAGCAATTTCTACATCTACGTAGAATTTACGGGAAAGTTGCAGTAGTTGTCCTGATTT TCACTGATCACTTGTCTTTTATTGCTTGGAAGCTCTCCAATTGTCAGTAGCAGATGGCAGTGAGGACTCAGGAAGCCAGT CAGACATGAGTAAATTGTTGGCAGATCAGTCGTTTGTATCTTCTATCCTTGCATCGGTATGTCTGATGAATTATAAAATA TAAATCCTTTATATTTTCCAGTATGTTCTTGAAATGTATAATAATTGAATTATCTGCATTATGTTCTACAACTGCATTAT AATTCTTCGCTTCTGCAGCTTCCCGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTACTGGCCTCCATGCAAAATCA GTCTGAAGTAAGTCTTCTTTTATGGAAAATTTAATTGGGTTTGAAAAGAACTTCATAGAAAATCGCATAGGATGTGCATT TGAATTCGGTGTAATCTCAATTAGTCTTGAGATCCTTTAGTTTTGAGGACCATAGTCGACTTTTAGGTGGAATTATATAT TAGGAAGTGACTCACGTGACAACATAATCAGCAAGTGCCTTCGCCAACTAATTTGACTAGGAAAAAATGTGCTTAGCAGG GATAAATTGGTCATTATCATATGTTCATTAGTCATTACTATTTGTTTGTTCAATATTCTCGCTGTTTTTCTTTTAAGGCT TAATCCAGTTTTTGGTCCCCAACCTTTTACATAAATATGGCTTTAGTCCCTCGCTGGAGTAAGTGTAGGGACTGGTCCCT CGTTTTTCGCAAAATGTTTGGTTTTCGTCCCTCCGGCCGTTTGGGTCAACGCCGGACCTCCGGCAGCCCATGTGGCGGTC CATGTGGCATTGCCATGTAATTTAATTAGTCCAGTTGGATTTTTAATTTTATTTAAAATTCCACAAGGGTAATTAACAAT TTAATTAAAAATATTAATTAAAAAAAATTACAAAAACTCTTATCCCTAATCTCTAATCCCTAATTCTGAAATCTGGATGA ACTTAATTGAAAAACTTCTTCATCCTCTTGATTCATCATCTTCTCCCTCATGCCTGTGAGGCATTGTAGTCAAATCGAGA TACGTATCGTGTATCGCTAGACCCTAATTCCGTGTCGCGTATTGTATCGTAACGTGTATCGTAAGATACGGACACAAAAA AAATTAAGTCATAAATTAAATAATATACTGATATATCATCTAAATATAGTTCAAAATAATCAAAGATCCAAGTCATAAGT AGAAAAATAGTCTCACAAAGTTCAAGTTCAACCTAATTCCAAGTCATAAGCCAAACTTAAGTACTAAACATCAAAGAGAT GAAATTAAATGCCCTCTCCCTAATTCCAAGCCATTAAAGGGCTGCTGAAGTTGAACGTGAAACATGAAAGGGCTGCTGAA GTTGAACGTGAAAGGGTGAAAGAATCAAAGAAAACATCACTTTTTAGGGCAATTTAGTAATTTTTAATGAAATTAAATGC TTACTCCCTAATTTCTAGGAGAGTAAGATGAAACTGCATTTGAAAAACTGTTTTTGTATCGTATCGGGATACGTATCGTG CGATACGCACGATACTGACTACCACCACAACTCTGCTCCGTCCCTTCATTCCTCGTCCTTTGCCATCCCGGCCTCCTCCT CTACCGCCACCTTGTGCCTTAAAAGGGTTACCTCTACGTCCTCCTCCTCTTCCTCCATGACCTCTCCCTCTTCCTCTATC AGCCCTTCCACTGAACCCACCACCACGACCTGGAGACATTCAAACACCATAATCGTCGCCGTCCTCACTGCTGGCAGAGC CTCCCACCATGGACCGCACACACGCTCTACCAGAACCCAGACGTCGACTTCCAGCATCCCAGATATGGGTTGTTTGGTCT GAAGATCTGGGTTTTTTTGGTTTGAAAACCTAGGTTTTTCATTCCCTTTCTCCTATTCTGCCTCTCCCTCTTCTCTTCAT CTCTAATCCTCTTCTCTTTTCCTTCATATATCCTACAAAGAAACAAACACAAAACCTTAAACTTTTCTAGATGTTGTGTC TGTTTTCTTTGTTCATTCTGTTGTTTTGTTATTTTCTATTGCTTTCTTCTCTTGTTCTGTTTTGTACTGTTAACTTAGCT GGAGGTTTTTTCCCAGCCTTTTTCTTCACAAAAAAAAAATGAATGAATAATGAATGAAGTTAGGAATGTGAATATGTCCA GCTCAAACAATAACAATGCAAGTCTGGGTTGGGTTCTTTGCACGTCTAGGTTCGATTCTTTTTATGATGATGATGGGTTG AAGATGATGTTGATAATGATGAAGAAGATGCAATGAATGAAGATGATGTTGTTAATTAATTTAATAATTAGTGTTTTAAT TTTTTTAAAATGAAAAAAGAAAAGAAAAATTCCAAGTGGACTCATTAAATGACGTGGCAATGCCACATGGACCGCCACAT GGGCTGCCGGAGCTCCTGCGTTGACCCAAACGGACCAGTCCCCATACTTACTCTGGTGAGGGACTAAAGCCATATTTATG TAAAGTTTGGGACCAAAAACTGGATTAAGCCTTCTTTTAAAGTCTTTTAGGTGAGTGGGGGCTAGTGTGGGGCTTGAAGG ACATTAACAAAGAGTTTCTAGTAATTGGCCAATTTAATTGTCTTGTGTCATTTATTCTATTTGAATACAAGCAGGTCAAT AGACTACTATATAGATGCTATTTGAACACATTTATGCCCAATTTAATTGTCTTGTGTCATTTATTCTATTTGAATACAAG CAGGTCAATAGACTTCTCTATAGATGCTATTTGAACACATTTATGCCCAATTTAATTGTCTTGTGTCATTTATTCTATTT GAATACAAGCAGGTCAATAGACTTCTATATAGATGCTATTTGAACACATTTATGCCCAGGACATCACATGGCTTGCATTT TTTAGATTCAACTATTGATGTTTTTGTACATTTTCTGCATTATGATTGGTTTTCTGATTGTGCTGTGAATCAGCCCCAAC AGAAGAATGAAGACAAGCCACCAAATGAGGAGGAGAAGAAATAATCTTGAATGTTCTATTTCCGTTCTTTTGATGGGCAC GTTAGTTGCATGTTGGAAGGTGGTTTTAATCAGAGGATTGTTTCATTTGTATACAGATTATGGAGTCTCCCCTGCTGATT AAAATGTATGCATGTCTCAATATGTATGAATGATTGATCAGAGGTTAAAAGCCTATGTCAATGAGGGCTTAAGCGAGTAC ACGGTTTTATCATGAATACATCCTGAAATGTACTTTAATGGTATTACAAAGTTAATACGACTCCTTTATTTCATAATTTT TTTTTTTTGTCTAAAAGCAGATGCACAGAGCTGACTACTTTGTCTTTTATACACTTCCTATCATTCCGTCTTTTGCCCGG GTTTTGTTAGGCCTGCATATTTAAAAATTCATTGACAATTGATTCTAAAGTTATAATCAATTAAGAAGAGAATATTTTGA GAGTAGACAAAGAAGAGAACCTTTTTAGAGTAGCTTTTGGTTGTTTGAATTAATTTTAATGAAATATGTTGTGTTTGATT TTTCGTTCAACTGAACGAAATGTGAATGGAGCCTTGAGCTCTTTTTCATGTTTGGTGCATTGCAATTCTAATCCCACATT CCAATGCTTCCAAATCTTAAACTTGACCAAAACATATGTAGAGATTGATTAGAACATGTTAGTAAGATCAAAACAAAAAC
CDS sequence (LotjaGi4g1v0129500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTCGAGGCGACGATGATCTGTATTGACAATTCTGAATGGATGCGTAATGGGGACTACTCTCCTTCTCGATTTCA AGCCCAAGCAGACGCTGTCAATCTTATTTGTGGTGCTAAAACCCAGTCTAATCCTGAGAATACGGTTGGAGTTCTCACGA TGGCGGGGAAGGGTGTTCGTGTTTTGGTCACCCCTACCAGTGATTTGGGAAAGATCTTAGCTTGTATGCATGGACTAGAA ATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAGTTAGCTCTTAAGCATCGGCAGAATAAGAAACAGCA GCAAAGGATTATTGTCTTTACTGGGAGTCCTATCAAGCACGAGAAGAAAATGTTGGAGATGATTGGGCGAAAGTTGAAAA AGAATAGCGTTGCACTTGACATTGTCAATTTTGGTGAAGAAGACGAGGGAAAGACAGAGAAGCTGGATGCACTCCTTGCA GCCGTTAATAATAATGATACCAGCCGCATGGCTCATGTTCCACCTGGTCCAAATGCTCTATCTGATGTACTTATAAGTAC ACCAATTTTTACTGGTGATGGAGAGGGTGGAAGTGGTTTTGCAGCAGCTGCTGCTGCAGCAGCAGCAGCAGGTGGTGTAT CTGGATATGACTTTGGCGTGGATCCGAACTTGGACCCGGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGG GCCCGACAGGAAGCAGCTGCAAAGAAGGCTGCAGAGGATGCTTCCAAGGAGAATGGTGGTGAGCAGCAAGCCAGCTCGCA GGATGCAGCCATGATTGAGCGTGCTAGTGAAGAAACTTCAGAAGCTGCGACTAAGACAAATGATATGATGGACGATGAGA ATGCTCTACTACAGCAGGCCCTTGCTATGTCAATGGATGATCCTGTGATTAACAAAGATATGAGAGATACAGATATGTCT GAAGCAGCTGCAGATGATCCTGAGTTAGCTTTAGCTCTCCAATTGTCAGTAGCAGATGGCAGTGAGGACTCAGGAAGCCA GTCAGACATGAGTAAATTGTTGGCAGATCAGTCGTTTGTATCTTCTATCCTTGCATCGCTTCCCGGGGTTGACCCAAATG ACCCATCTGTCAAAGATTTACTGGCCTCCATGCAAAATCAGTCTGAACCCCAACAGAAGAATGAAGACAAGCCACCAAAT GAGGAGGAGAAGAAATAA
Protein sequence (LotjaGi4g1v0129500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLE IGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFTGSPIKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLDALLA AVNNNDTSRMAHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEER ARQEAAAKKAAEDASKENGGEQQASSQDAAMIERASEETSEAATKTNDMMDDENALLQQALAMSMDDPVINKDMRDTDMS EAAADDPELALALQLSVADGSEDSGSQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNEDKPPN EEEKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 405 | 405 | 2.5E-255 | – | |
| CDD | 1 | 188 | 188 | 1.02496E-108 | – | |
| PANTHER | 1 | 405 | 405 | 2.5E-255 | – | |
| SMART | 2 | 175 | 174 | 2.8E-11 | ||
| Gene3D | 3 | 186 | 184 | 4.1E-77 | ||
| SUPERFAMILY | 4 | 173 | 170 | 7.79E-37 | ||
| ProSiteProfiles | 5 | 189 | 185 | 10.464 | ||
| Pfam | 6 | 115 | 110 | 8.3E-28 | ||
| SMART | 223 | 242 | 20 | 11.0 | ||
| ProSiteProfiles | 223 | 242 | 20 | 8.935 | ||
| Pfam | 225 | 238 | 14 | 0.61 | ||
| Coils | 233 | 253 | 21 | - | – | |
| MobiDBLite | 243 | 290 | 48 | - | – | |
| MobiDBLite | 258 | 273 | 16 | - | – | |
| MobiDBLite | 274 | 288 | 15 | - | – | |
| Pfam | 292 | 307 | 16 | 0.046 | ||
| SMART | 292 | 311 | 20 | 51.0 | ||
| SMART | 324 | 343 | 20 | 15.0 | ||
| Pfam | 325 | 338 | 14 | 3.0 | ||
| MobiDBLite | 365 | 405 | 41 | - | – | |
| MobiDBLite | 379 | 393 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0129500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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