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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002035
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 100 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.694s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0098479.1
n.a. PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Fragaria vesca subsp]. vesca] gi|470130018|ref|XP_004300904.1| chr0 41685748 41697326 +
3 domain predictions
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Lj0g3v0098479.2
n.a. PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Fragaria vesca subsp]. vesca] gi|470130018|ref|XP_004300904.1| chr0 41686992 41697101 +
3 domain predictions
 –
Lj0g3v0185729.1
n.a. PREDICTED: protein transport protein SEC23-like [Cicer arietinum] gi|502155829|ref|XP_004510207.1| chr0 90491322 90492490 -
2 domain predictions
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Lj0g3v0201099.1
n.a. PREDICTED: protein transport protein SEC23-like isoform 1 [Glycine max] gi|356540108|ref|XP_003538532.1| chr0 99355188 99361251 +
3 domain predictions
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Lj0g3v0203219.1
n.a. PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max] gi|356534416|ref|XP_003535751.1| chr0 100715572 100728064 +
3 domain predictions
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Lj0g3v0242929.1
n.a. PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum] gi|502135229|ref|XP_004502262.1| chr0 126025894 126033571 -
3 domain predictions
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Lj0g3v0266539.1
n.a. Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi|357443207|ref|XP_003591881.1| chr0 138046884 138048764 -
6 domain predictions
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Lj0g3v0281489.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like isoform 1 [Glycine max] gi|356559272|ref|XP_003547924.1| chr0 145917144 145925030 -
6 domain predictions
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Lj0g3v0288799.1
n.a. Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi|357443207|ref|XP_003591881.1| chr0 150062779 150066991 +
6 domain predictions
 –
Lj0g3v0322249.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356556700|ref|XP_003546661.1| chr0 168278880 168283373 +
3 domain predictions
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Lj0g3v0332229.1
n.a. PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum] gi|502135095|ref|XP_004502219.1| chr0 173792431 173796045 +
3 domain predictions
 –
Lj0g3v0332229.2
n.a. PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum] gi|502135095|ref|XP_004502219.1| chr0 173792431 173795808 +
3 domain predictions
 –
Lj0g3v0344259.1
n.a. Protein transport protein SEC23 [Medicago truncatula] gi|357513131|ref|XP_003626854.1| chr0 180521297 180528345 -
3 domain predictions
 –
Lj1g3v1353690.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG1-like isoform X3 [Cicer arietinum] gi|502137082|ref|XP_004502961.1| chr1 16110935 16115195 +
3 domain predictions
 –
Lj1g3v1353690.2
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG1-like isoform X1 [Cicer arietinum] gi|502137077|ref|XP_004502959.1| chr1 16110935 16114786 +
3 domain predictions
 –
Lj1g3v1353690.3
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG1-like isoform X3 [Cicer arietinum] gi|502137082|ref|XP_004502961.1| chr1 16110935 16115195 +
2 domain predictions
 –
Lj1g3v1353690.4
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG1-like isoform X3 [Cicer arietinum] gi|502137082|ref|XP_004502961.1| chr1 16111237 16115195 +
3 domain predictions
 –
Lj1g3v1785790.1
n.a. Uncharacterized protein TCM_037260 [Theobroma cacao] gi|508782602|gb|EOY29858.1| chr1 20851175 20852962 -
2 domain predictions
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Lj1g3v4047310.1
n.a. Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi|357472157|ref|XP_003606363.1| chr1 47786038 47791459 -
6 domain predictions
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Lj1g3v4107020.1
n.a. General transcription factor IIH subunit [Medicago truncatula] gi|357509341|ref|XP_003624959.1| chr1 48803756 48809481 -
4 domain predictions
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Lj1g3v4804040.1
n.a. PREDICTED: protein transport protein Sec24-like At3g07100-like [Cicer arietinum] gi|502113027|ref|XP_004494519.1| chr1 57825127 57833622 -
3 domain predictions
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Lj1g3v4830280.1
n.a. PREDICTED: protein transport protein Sec23A-like [Glycine max] gi|356572844|ref|XP_003554575.1| chr1 58331898 58337418 -
3 domain predictions
 –
Lj1g3v4955270.1
n.a. PREDICTED: protein BONZAI 3-like [Glycine max] gi|356505898|ref|XP_003521726.1| chr1 60258765 60265069 -
4 domain predictions
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Lj1g3v4955270.2
n.a. PREDICTED: protein BONZAI 3-like [Glycine max] gi|356504074|ref|XP_003520824.1| chr1 60258765 60260318 -
2 domain predictions
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Lj2g3v1168790.1
n.a. PREDICTED: mediator of RNA polymerase II transcription subunit 25-like isoform X1 [Cicer arietinum] gi|502164870|ref|XP_004513303.1| chr2 18406621 18420232 -
2 domain predictions
 –
Lj2g3v1168790.3
n.a. PREDICTED: mediator of RNA polymerase II transcription subunit 25-like isoform X1 [Cicer arietinum] gi|502164870|ref|XP_004513303.1| chr2 18406621 18420232 -
2 domain predictions
 –
Lj2g3v1242280.1
n.a. Uncharacterized protein TCM_021030 [Theobroma cacao] gi|508714331|gb|EOY06228.1| chr2 19717527 19719527 -
2 domain predictions
 –
Lj2g3v1242300.1
n.a. Uncharacterized protein TCM_021030 [Theobroma cacao] gi|508714331|gb|EOY06228.1| chr2 19723171 19725030 -
2 domain predictions
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Lj2g3v1242320.1
n.a. Uncharacterized protein TCM_021030 [Theobroma cacao] gi|508714331|gb|EOY06228.1| chr2 19731125 19733353 -
2 domain predictions
 –
Lj2g3v1468250.1
n.a. zinc finger protein [Medicago truncatula] gi|163889361|gb|ABY48131.1| chr2 23381177 23383851 +
6 domain predictions
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Lj2g3v1691080.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Glycine max] gi|356496629|ref|XP_003517168.1| chr2 26096400 26100735 -
3 domain predictions
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Lj2g3v1691080.2
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Glycine max] gi|356496629|ref|XP_003517168.1| chr2 26096400 26101388 -
6 domain predictions
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Lj2g3v2089750.1
n.a. RecName: Full=Magnesium-chelatase subunit ChlD, chloroplastic; Short=Mg-chelatase subunit D; AltName: Full=Mg-protoporphyrin IX chelatase subunit ChlD; Flags: Precursorgi|2318117|gb|AAB72194.1| Mg-chelatase subunit D [Pisum sativum] gi|3913218|sp|O22437.1|CHLD_PEA chr2 31659494 31667688 +
3 domain predictions
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Lj2g3v2089750.2
n.a. RecName: Full=Magnesium-chelatase subunit ChlD, chloroplastic; Short=Mg-chelatase subunit D; AltName: Full=Mg-protoporphyrin IX chelatase subunit ChlD; Flags: Precursorgi|2318117|gb|AAB72194.1| Mg-chelatase subunit D [Pisum sativum] gi|3913218|sp|O22437.1|CHLD_PEA chr2 31659494 31668979 +
6 domain predictions
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Lj3g3v0938190.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356528633|ref|XP_003532904.1| chr3 11491072 11498637 +
3 domain predictions
 –
Lj3g3v1089440.1
n.a. Zinc finger family protein [Theobroma cacao] gi|508787149|gb|EOY34405.1| chr3 14625793 14626157 -
4 domain predictions
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Lj3g3v2576640.1
n.a. PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 [Vitis vinifera] gi|225444686|ref|XP_002277641.1| chr3 31801246 31808521 -
6 domain predictions
 –
Lj3g3v2576640.2
n.a. PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 [Vitis vinifera] gi|225444686|ref|XP_002277641.1| chr3 31801246 31808521 -
5 domain predictions
 –
Lj3g3v2576640.3
n.a. PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 [Vitis vinifera] gi|225444686|ref|XP_002277641.1| chr3 31801246 31808521 -
6 domain predictions
 –
Lj3g3v2735120.1
n.a. PREDICTED: ATP-dependent DNA helicase 2 subunit KU80-like isoform X1 [Cicer arietinum] gi|502146520|ref|XP_004506489.1| chr3 33663879 33669558 +
3 domain predictions
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Lj3g3v2993440.1
n.a. PREDICTED: protein transport protein SEC24-1-like [Glycine max] gi|356542764|ref|XP_003539835.1| chr3 37062123 37069899 -
3 domain predictions
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Lj3g3v3131850.1
n.a. Inter-alpha-trypsin inhibitor heavy chain H4 [Medicago truncatula] gi|357466819|ref|XP_003603694.1| chr3 39024388 39027757 -
6 domain predictions
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Lj3g3v3131860.1
n.a. Inter-alpha-trypsin inhibitor heavy chain H4 [Medicago truncatula] gi|357466819|ref|XP_003603694.1| chr3 39024894 39027719 -
6 domain predictions
 –
Lj4g3v0388280.1
n.a. PREDICTED: mediator of RNA polymerase II transcription subunit 25-like isoform X1 [Cicer arietinum] gi|502164870|ref|XP_004513303.1| chr4 5096827 5109512 +
2 domain predictions
 –
Lj4g3v2576090.1
n.a. Protein transport protein Sec23 [Medicago truncatula] gi|357462887|ref|XP_003601725.1| chr4 34511762 34512566 -
2 domain predictions
 –
Lj4g3v2717190.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356511063|ref|XP_003524251.1| chr4 36624714 36628572 -
3 domain predictions
 –
Lj4g3v2717190.2
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356511063|ref|XP_003524251.1| chr4 36624714 36628181 -
3 domain predictions
 –
Lj4g3v2871890.1
n.a. PREDICTED: protein BONZAI 1-like [Cicer arietinum] gi|502139656|ref|XP_004503848.1| chr4 38406834 38412110 -
4 domain predictions
 –
Lj5g3v1749230.2
n.a. von Willebrand factor A domain-containing protein 5B1 [Medicago truncatula] gi|357475499|ref|XP_003608035.1| chr5 25013556 25016009 +
2 domain predictions
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Lj5g3v1811590.1
n.a. Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi|357443207|ref|XP_003591881.1| chr5 25902463 25904391 +
6 domain predictions
 –