Domain Predictions — View

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PF13519

Source: Pfam

Description

von Willebrand factor type A domain

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 19

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0281489.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like isoform 1 [Glycine max] gi\|356559272\|ref\|XP_003547924.1\|	Domains Coil G3DSA:3.40.50.410 IPR002035 IPR003903 IPR027040 PF02809 PF13519 PS50234 PS50330 PTHR10223 SM00327 SM00726 SSF53300 cd01452 mobidb-lite	15
Lj2g3v1691080.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Glycine max] gi\|356496629\|ref\|XP_003517168.1\|	Domains Coil G3DSA:3.40.50.410 IPR002035 IPR003903 IPR027040 PF02809 PF13519 PS50234 PS50330 PTHR10223 SM00327 SM00726 SSF53300 cd01452 mobidb-lite	15
Lj2g3v2089750.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RecName: Full=Magnesium-chelatase subunit ChlD, chloroplastic; Short=Mg-chelatase subunit D; AltName: Full=Mg-protoporphyrin IX chelatase subunit ChlD; Flags: Precursorgi\|2318117\|gb\|AAB72194.1\| Mg-chelatase subunit D [Pisum sativum] gi\|3913218\|sp\|O22437.1\|CHLD_PEA	Domains Coil G3DSA:1.10.8.80 G3DSA:3.40.50.410 IPR002035 IPR011776 PF13519 PS50234 PTHR10338 PTHR10338:SF126 SM00327 SSF53300 TIGR02031 cd01451 mobidb-lite	14
Lj3g3v3131850.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H4 [Medicago truncatula] gi\|357466819\|ref\|XP_003603694.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 TRANSMEMBRANE cd00162 cd01466 mobidb-lite	21
Lj3g3v3131860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H4 [Medicago truncatula] gi\|357466819\|ref\|XP_003603694.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd00162 cd01466 mobidb-lite	18
Lj6g3v1695000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, RING-type [Medicago truncatula] gi\|124360876\|gb\|ABN08848.1\|	Domains G3DSA:3.40.50.410 IPR002035 PF13519 PTHR10579 PTHR10579:SF47 SSF53300	6
LotjaGi1g1v0414100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger ring-type protein; TAIR: AT5G49665.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7J445\|G7J445_MEDTR Zinc finger (C3HC4-type RING finger) family protein; Found in the gene: LotjaGi1g1v0414100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	19
LotjaGi1g1v0414100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger ring-type protein; TAIR: AT5G49665.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7J445\|G7J445_MEDTR Zinc finger (C3HC4-type RING finger) family protein; Found in the gene: LotjaGi1g1v0414100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	19
LotjaGi2g1v0380200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp\|P55034\|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr\|I3RZP6\|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200	Domains Coil G3DSA:3.40.50.410 IPR002035 IPR003903 IPR036465 PF02809 PF13519 PS50234 PS50330 PTHR10223 PTHR10223:SF9 SM00327 SM00726 SSF53300 cd01452 mobidb-lite	16
LotjaGi2g1v0380200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp\|P55034\|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr\|I3RZP6\|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200	Domains Coil G3DSA:3.40.50.410 IPR002035 IPR003903 IPR036465 PF02809 PF13519 PS50234 PS50330 PTHR10223 PTHR10223:SF9 SM00327 SM00726 SSF53300 cd01452 mobidb-lite	16
LotjaGi2g1v0380200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp\|P55034\|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr\|I3RZP6\|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200	Domains Coil G3DSA:3.40.50.410 IPR002035 IPR003903 IPR036465 PF13519 PS50234 PS50330 PTHR10223 PTHR10223:SF9 SM00327 SM00726 SSF53300 cd01452 mobidb-lite	15
LotjaGi2g1v0380200.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp\|P55034\|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr\|I3RZP6\|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200	Domains Coil G3DSA:3.40.50.410 IPR002035 IPR003903 IPR036465 PF02809 PF13519 PS50234 PS50330 PTHR10223 PTHR10223:SF9 SM00327 SM00726 SSF53300 cd01452 mobidb-lite	16
LotjaGi2g1v0443300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Mg-protoporphyrin IX chelatase; TAIR: AT1G08520.1 ALBINA 1; Swiss-Prot: sp\|O22437\|CHLD_PEA Magnesium-chelatase subunit ChlD, chloroplastic; TrEMBL-Plants: tr\|A0A1J7G395\|A0A1J7G395_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0443300	Domains Coil G3DSA:1.10.8.80 G3DSA:3.40.50.300 G3DSA:3.40.50.410 IPR000523 IPR002035 IPR003593 IPR011776 IPR027417 IPR036465 IPR041628 IPR041702 NON_CYTOPLASMIC_DOMAIN PF01078 PF13519 PF17863 PS50234 PTHR43473 PTHR43473:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00327 SM00382 SSF52540 SSF53300 TIGR02031 cd00009 cd01451 cd17706 mobidb-lite	32
LotjaGi2g1v0443300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Mg-protoporphyrin IX chelatase; TAIR: AT1G08520.1 ALBINA 1; Swiss-Prot: sp\|O22437\|CHLD_PEA Magnesium-chelatase subunit ChlD, chloroplastic; TrEMBL-Plants: tr\|A0A1J7G395\|A0A1J7G395_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0443300	Domains Coil G3DSA:1.10.8.80 G3DSA:3.40.50.300 G3DSA:3.40.50.410 IPR000523 IPR002035 IPR011776 IPR027417 IPR036465 IPR041628 IPR041702 PF01078 PF13519 PF17863 PS50234 PTHR43473 PTHR43473:SF2 SM00327 SSF52540 SSF53300 TIGR02031 cd01451 cd17706 mobidb-lite	24
LotjaGi2g1v0443300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Mg-protoporphyrin IX chelatase; TAIR: AT1G08520.1 ALBINA 1; Swiss-Prot: sp\|O22437\|CHLD_PEA Magnesium-chelatase subunit ChlD, chloroplastic; TrEMBL-Plants: tr\|A0A1J7G395\|A0A1J7G395_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0443300	Domains Coil G3DSA:1.10.8.80 G3DSA:3.40.50.300 G3DSA:3.40.50.410 IPR000523 IPR002035 IPR011776 IPR027417 IPR036465 IPR041628 IPR041702 PF01078 PF13519 PF17863 PS50234 PTHR43473 PTHR43473:SF2 SM00327 SSF52540 SSF53300 TIGR02031 cd01451 cd17706 mobidb-lite	24
LotjaGi4g1v0129500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp\|P55034\|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr\|A0A0B2PG91\|A0A0B2PG91_GLYSO 26S proteasome non-ATPase regulatory subunit 4; Found in the gene: LotjaGi4g1v0129500	Domains Coil G3DSA:3.40.50.410 IPR002035 IPR003903 IPR036465 PF02809 PF13519 PS50234 PS50330 PTHR10223 PTHR10223:SF9 SM00327 SM00726 SSF53300 cd01452 mobidb-lite	16
LotjaGi4g1v0129500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp\|P55034\|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr\|A0A151SJL6\|A0A151SJL6_CAJCA 26S proteasome non-ATPase regulatory subunit 4; Found in the gene: LotjaGi4g1v0129500	Domains Coil G3DSA:3.40.50.410 IPR002035 IPR003903 IPR036465 PF02809 PF13519 PS50234 PS50330 PTHR10223 PTHR10223:SF9 SM00327 SM00726 SSF53300 cd01452 mobidb-lite	16
LotjaGi4g1v0129500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp\|P55034\|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr\|A0A151SJL6\|A0A151SJL6_CAJCA 26S proteasome non-ATPase regulatory subunit 4; Found in the gene: LotjaGi4g1v0129500	Domains Coil G3DSA:3.40.50.410 IPR002035 IPR003903 IPR036465 PF02809 PF13519 PS50234 PS50330 PTHR10223 PTHR10223:SF9 SM00327 SM00726 SSF53300 cd01452 mobidb-lite	16
LotjaGi6g1v0279600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, RING-type; TAIR: AT2G38970.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q9SI09\|XERIC_ARATH Probable E3 ubiquitin-protein ligase XERICO; TrEMBL-Plants: tr\|I1L074\|I1L074_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0279600	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF13639 PS50089 PTHR10579 PTHR10579:SF47 SM00184 SSF53300 SSF57850 cd16448	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16448	CDD	1	5.26