Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0292500 |
Transcript ID | LotjaGi4g1v0292500.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 5' nucleotidase family protein; TAIR: AT2G23890.2 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; Swiss-Prot: sp|Q75K12|NT5D_DICDI 5'-nucleotidase domain-containing protein DDB_G0275467; TrEMBL-Plants: tr|K7MKA7|K7MKA7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0292500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66406908..66413948) extracted from Lotus japonicus Gifu genome v1.2.
AACACTCACTTACTCACTCTTCTGTTTCCACTGTCACAGGGTTCCACGCTGATTTCATCTTCTGCACTCCAACAAGGTAT TTTTCTTATCATCAATCTACTTCATTTGTAATGCTTTCATTGATTCACAAAAAGAGATTCATTATGAATTGTTGAAATGA AAATCTCGCTTTCATTGATTCACAATTTCACACTCTTTCACGGTTTAGGGTTTTCGCGAAGCTACAGCGTCATTGAATCA TTGGAGCAGTGTGCGTCGCAATCTGATGATGAGGAGATAGCCACTCTCCGTCGCGAATACGAAGCTGCCAAACAGAGTTT TCTTAAGATTCCTGATGCACTCAAACAAATGCCCAAAATGAATCCCAAAGGTTCATTCATTGCTTCAACAATTAATGAAT GTGTGTGTGTGTGTGTTTTTTTCTTTGTGCGTGTTGATTTGATTCTGTTCTCTTTTCGGTGTTTTGGATTAGGCATTTAT GTGAATAAGAATCTGAGATTGGACAATTTGCAAGTTTATGGGTTCGATTACGATTACACTTTGGCACATTACTCGACCCA TTTGCAGACTCTGATATATGACCTTGCCAAGGAGTATATGGTTAATGAGGTTAGCTCCAATCATCTGTCTCGGGCTGTTT GTTTTTACAACTGTGGTTGTTCGTTTTCTTACTCTTTTTGTTGCTTATTTCAGCTTAGGTATCCAGAGATTTGCATGGGT TTTAAATATGATGCAGCTTTCCCCATTAGAGGACTTTGCTATGATAAGTCAAAAGGGTGTCTCTTGAAGCTGGATTTCTT TGGTTCAATTGAGCCAGACGGATGCTACTATGGTAGACGAAGGGTATTTGGCTCTGATTCTTTATTGTCTTGGATTTGTT TTTCGTAACTTCTTATGTAAGATTGCATAATGGACATGTTGAGATGCTTGTATTGATGAATAGCGGCTTACTTAAATTTG ATAAACTTCTTTTAGCACTATTTGTCCATTGTAACAGAAATGATGATTGATGAATTACAAGTAAAATGTTTTTTACATAG ATTACTTTCTTTCAAATAACTTTACAGCTAAGCCCAAAGGAAATACGTGATATATATGGCACACGGCATATTGGTCGTGA TCAAGCCCGATCACTTGTTGGTTTGATGGATTTCTTCTGCTTTAGTGAGGTCAGTTCCCCGTCACCCTTTCATTCTATGA TAATTATCTGGTTAATGGCTAGAGGACCTTTGGTACTGCCCAGTTTTGGAGCTTTGCCTTATTGAAATTTCATGCCATGA GTCTTGTACTTTTCTTCAAATGTTACAGAATTTTATTCATATCATTAAGTTACATAGACAAGCTACCATTAACATACCAC CTTCAAAATTCATCCTGAAGGGACTGCTACAGTATCTTTCCCTGTTTCTGAACCCAGTATACTTGAAGAAATGGACATGT GGACCACCATTAGATCTCTGTTTATTATTACCTTGCAAGAGATGAGAAATAGCACCAGGAGTCAGGATTGAATCATCTTA GTTTATGAAGATTACTGCTTATATAATGCATAAAAGAATGGAAATAGAAATTAGCTGGAAGTAATTTGATAGATTTTGTT CCTCATAGGATTGTTTATGTTATTTTCAAAGAAAAAATGTTTAAAAGAATGGAAATAGAAATTAGCTGGAAGTAATTTGA TAGATTTTGTTCCTCATAGGATTGTTTATGTTATTTTCAAAGAAAAAAAGTTTAGGTGAATTTTTTTTATGATAATTAGA CGAGTGTCTTTTAAGAAAAGCAAGCACTCTGGAAAAGCAGTTTGAGTGTTTTTTTTCAGAACTAGAAAAAGTAGCTTCAG CAAAGTAGCTCTGAAAGAAGATATTATCATAAAAGCATTTACTAAAACAAACTAATGCAAATGCACCCTTAATCAGACTT GGCCTATTATACAGAATTCTAAAATTACTCTTGCTTCTTCAATCGGTCATTTGTTCTGTGACAGTTACACTAACAATTTT ATTGGTTTCCTTCTGGTTAAACTGAGTGCAATATCTACTGCATACCTAAGCAGGTCTTTCAGACTGTTAAGCTAAATCTC TACTACCGAGGCAGGAGTTGGTTCCCAATGTCTTGAAATTATAAAACTTAAACTGAAGGCCAAACTCTTGCAATGCAGTA CTGATCCCTCTGAAATTTGAAAATTCTCTTGAAAGCTTAAACTCTCTTCCCTTGCCAATTTCATTTGCCACGTCCTGGGT AGCCTATTGTGAAGCCTCTTGCTGCCGTAAAATCTTAGGTTGAGAATTGATTGTTTATATCACTACTCTGCAGGCATGCC TCCTTGCAGATATAGTGCAATACTTCGTTGATGCTAAGCTAGAATTTGATGCTTCCTACATTTATGAAGATGTTGTTCGT GCAATTGAACATGTCCACCGAAGTGGCATCGTTCATCAAGGAATTCTCTCTGATCCACACAAATACTTAGTTAAAAATGT AAGTTCAAACCATTTTACATATTTCTATTAAATGTTTTTGATGAATGTGTGCAACAGATGCTGCAATAAGTTGTCTACAA AAATTTCACAAACCTAATTCAGGATCTAGTATCTTAATAAAGTTTTTTTTTGTCTATCTAATATCAAAGTACACATTGTA TCTTAATGTGGTTGTATTATCGAATCGAGTTATTTTATTGTCTAGTTGAAAGTTTATCGTTATTATTTATCTGTTGGTGA ATATTTCAGGGAAAGATATTATGTTTTCTTAAGATGCTAAGGGAGAGGGGGAAGAAGCTTTTCTTGTTGACCAATTCTCC TTATCACTTTGTGGATGGAGGGATGCGTTTTATGTTAGAGGTATTTGATTAACTGGAATTCATATGACACGTTTTGTTTA TATCATGCAATGTTTTTCTTTAGCCTTCACAGTACTTGTTAGAGTTTAATAATTTTTTTAGTTTATTTTTCTTAGTTTGG AAAGTTGCATGACCCAGTTATTGTCAATTTGGGTCAGTCGGAGCTCCAACTCTAAATACTTCTTGTTTCTTTTATCCTCT TGCATGCTGGAGTTATGTTTTATCAGTTAGATGGTTAACATTGACACTAGCTGTCAGGTCTTTTTTAATGTTTTGTTAAA AGGTCCTTACTTGGTTTTTAATATAATATTTGTTATATATTACTGTTTTTCACTTTTCATATCTGGCCATATTTTCCTTG ATTTTATTCTTAAATGTTGATTAGGATTCTATGGATTGTAGAGACTCCTGGACAGAACTGTTTGATGTTGTGATTGCTAA GGCAAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGGTTTGTATCGTATACATCCTATGTGATATGGTGTTCAT TTTTTATACTCATAATTCTTTATATTCTTACTTTTTTTATGAAGGACGACTGGGATCATTGTGCTACATTTTAAATAGTT CAAAACTGACTTTAGGACTAGATTGTTCGGATATTACTCTGTTTTGAATTACAGTAATTAATGGCAAATGAAGTAAATGA TTGAGAAACAAATAAAATTTGAATCTTAAAGCAATTGAGCATAGTGTGGCTGGATGTAAATTCTTCTCATGCACAAAGCT AATCTGTATCATTTTCTTTTGTCAAGTAATTTTCTCCTCATCATTTCTAAAATCCTGAATTCTTTGTGAGGTCTTAAATG TCACTGGCTCTTTCATGCAGTTGTTATGACACACAGAAGGACACATTAACTTTTACCAAGGTTGATAAATTTCATCAAGA TAAAATATATTATCATGGATGCCTCAAATCCTTTCTTCAAATAACCAAGTGGAAAGGCCCGGAGGTATGCTTTTATTTGA TGTTTGATAAACCACACTTCATATTATTTTGATTTACTTAAACTTTACAATTAGTTTTATTTGCAGAGCAAATACACAAT TTTGCATTAAGATTCATTCACAGTATTGGGCTATGATAGTTGAGCTACACTCCATGTACAGAGTAATATATATATATATA TATGGAAGTTGTAGTCAGTTAGTGCCGACTGTAAAGTTAGTTACTAGTCAGTTTAGGCTGTTATAGTTCAAGTGCAGAGA CTCCATTATAGTTGTATGACTTGTATCTGTAATAATTCTATCAATAATAAACTCTCTCTGTTCCTAAACCATCGTTACAC TTGAAGCCCCTAGAATGATAAAATTCACACTTTCCATTAGGTGATATATTTTGGAGATCACCTATTTAGCGACTTAAGAG GGCCCTCAAAGGCAGGTTGGCGCACCGCCGCCATTATACATGAACTGGAGGTATGTCTGCTATATAATCCATTTTCATGT AGATTGTTTAACTTGCTTGTCAGTATCTTCCATGAATTTCTTATAGATAGATGAGTTGGCATAACTCCTTAATAGATCCA TACAACTCCCAGGAAAACAGGCTAATGCTATATTATTATTTATTTCCTGTCTGCATATATACACATGTTTAAACATTTTG TATGGTCAGGCCTCTAGTGAGGTTGGTTCCTTTTATAGTATTAATGATGGCTCTTTCATACTTGCTTGTGTTTGTTAAGC AGAAATCCAATTATGTTATTAGCTAGTTTATATTGGAGGCTTTCCTCTCTCATCAGCCTGGCTTTTGAGAGTGGGTTCTT CTCTAGAGAAAGATTCTTCATAGTTGTTTATCCACTGCCAGTGGGTATGGACTACTCTTTATATCTCGTCCTGGCTGGAT GGGAGAGACACAGCTCCTGTTAAAAGCAAAGCTCTCCCCTCTCATCGGTCTGTATCAGATGGCTTTATGTGATCTTCAGT TGTTTATGTATGCTGCCAACTTAGACAGTGACATCCTCCTTCAGTTGTTATTATATATGTATGTGATCTTCAGCTGTTAT TAAATGTACATTGTCAGCTTAGACAATGACGTCCTCCTTTGAGAATGTGCTAATAACTGGTTGCCATAATTATTGTGCCC TCTTCTCATGAATTTAATTTCTCTCCTTTTTCTGGCAAATGATTAATTCCCCTAAAGACTTAAAACTGGTAGGTCCAGAC TCATGTTTGGTTTTATATCTAATATTGTTTCAATAAAGAACCATCATTTACTTTGGCATATCTTTTAACTAATCAGTGTG TTTCACTTGATTATGTTGTAACTGACGAAGCTGCATTCCTTTCACTGGTTACTTTAGCTGTCATGTGGTGTTGTACAATT TGGTTCCTAATCAAAAAGCAAAACATTTTCTGCTATTGATATGAAAGCTAACCTTTGGAAAAATAGAACTTACAGTTCTT TGTGTGTTCATGGTGGTGAATGTTAGAAACACAGTAGTTGAACTTGAATGTTCAAAGTCCCTGGTGAACGCTAAAAGATA TATGAAATTATGATTCGAAATTTTATTTAGAAATGTTAATTTTGTGCTTGCAGAATGTTTCTTTGATGATCTATATCATC CTTCTTGAGTTACTGATGCATCATGCATGTAGAACTTTTGTCATAGTTAACATCAGAAACATAGACATTCTTATATGGAT TATTTCTTTAATATTGCAGAATGAAATACAAATACAAAATGAAGATACCTACCGCTTTGAGCAGGTATCCTTAATATCTT GTTACATATGCCTTTGATGGTTTTATGTTACTTTCTGTAGGTGGTTGTATTAAAGGTTAACCAACTAAAAAAACTTTATG ATTATGTTATCCGCTTGAGGAGTGAAAGATTCAATGAAAATTTGGAAACAGTAGTCAATGGAAATTGAAGTTATTTATCT TGAAAACAAAGATTGATTTTATTAGAGGATACAATTATTTTTTCCCTAAGAGTTCAATGGGAATCTAATTGTTTGTTTCC TTTTCTTAGTGAGTATTAACACGCAAATTACTAAATTATTGTTTTTCAAATAAATTGTGTTTTTGTTAAAGCTGACTCAT TCTGTTCATCATCAACAACCGAGCCAAACTTATTTTTACCAAGTTGATTGCATGTCTGATCTATGAGTCGCTTTGACCAA TTTCATGGCTGGTTCCCAAGTTAGCTGGTCTGACGGGTTGGTCCGAGCTGAATTTTTCAACACTAGTGATTAGTAATATG TTAGCATTTATTATATAGAATTGAGTCAACTTTATGATTGTCAACCCATTTTTAAGCTTGCTAAATGTTAATATGTTATT GTAGATGGATGATATGAAAATATTAATTGAAAAGATGAATTGCAACGTGGTGAAATGCTAGAACTATAAATAAAAACAAA AATCAAATTAGTTTAGTTTTCTTATTCATGTAGGTAGTTTGTAACTAAATGATAACATATCCCCTGTCTTCCACTTAAAT TGTAAGATGTTTTGTTTTGTTAAATTATAGACATTTGGACATTGTGGAAATTGGTACAACCATAAAAGTGATCCACTGAA GTCGCATCATGCATTAAATGAATTGTTTCTATTGTTATTAGAGGTCCATTTTTGGTTGATAAGTAACACTGTAATTGCTT TCTTCAACTGTATATTAGCGATGCACATTTTATGCGGTAATATTTTGTTGAACTATGCAGGCAAAGTTTCATATAATACA GGAGCTACTCGGTAAGTTGCATGCAACTGCAGCTAATAGTCTGAGAACTGCAGCTTGCAATTCGCTTCTGGAAGAACTTA ATGTGGAGAGACTAAAAGCACGCAACAAGATGAAGATGATGTTTAACAGATCTTTTGGAGCTACATTCCTAACTAGCACA GGGCAAGAATCTGCTTTTGCTCATAACATTCACCAGTATGCAGATGTTTATACCAGTAAGCCAGAGAATTTTCTTCTCCA TTCACCTGAAGCATGGCTTCATGTTCCGTTTGATGTCAAGATCATGCCTCATCATGTCAAGGTAATACATTCTTCTTCAT AAATGTTATTTATGTCGCCAACCCCATACTCTTTTTCTCCAAACAAAACTGAAAAGAAAATTCAACATCTTGTTATCCCA TGCTTCCTCGTGCATTTCTGTAACTCCTTGGTTGTTTATATGTTTTTCCAGGTTGCGTCAAATTTGTTCAAAACTGGATG A
CDS sequence (LotjaGi4g1v0292500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCAAAATGAATCCCAAAGGCATTTATGTGAATAAGAATCTGAGATTGGACAATTTGCAAGTTTATGGGTTCGATTA CGATTACACTTTGGCACATTACTCGACCCATTTGCAGACTCTGATATATGACCTTGCCAAGGAGTATATGGTTAATGAGG TTAGCTCCAATCATCTGTCTCGGGCTGTTTGTTTTTACAACTGTGGTTGTTCGTTTTCTTACTCTTTTTGTTGCTTATTT CAGCTTAGGTATCCAGAGATTTGCATGGGTTTTAAATATGATGCAGCTTTCCCCATTAGAGGACTTTGCTATGATAAGTC AAAAGGGTGTCTCTTGAAGCTGGATTTCTTTGGTTCAATTGAGCCAGACGGATGCTACTATGGTAGACGAAGGCTAAGCC CAAAGGAAATACGTGATATATATGGCACACGGCATATTGGTCGTGATCAAGCCCGATCACTTGTTGGTTTGATGGATTTC TTCTGCTTTAGTGAGGCATGCCTCCTTGCAGATATAGTGCAATACTTCGTTGATGCTAAGCTAGAATTTGATGCTTCCTA CATTTATGAAGATGTTGTTCGTGCAATTGAACATGTCCACCGAAGTGGCATCGTTCATCAAGGAATTCTCTCTGATCCAC ACAAATACTTAGTTAAAAATGGAAAGATATTATGTTTTCTTAAGATGCTAAGGGAGAGGGGGAAGAAGCTTTTCTTGTTG ACCAATTCTCCTTATCACTTTGTGGATGGAGGGATGCGTTTTATGTTAGAGGATTCTATGGATTGTAGAGACTCCTGGAC AGAACTGTTTGATGTTGTGATTGCTAAGGCAAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGTTGTTATGACA CACAGAAGGACACATTAACTTTTACCAAGGTTGATAAATTTCATCAAGATAAAATATATTATCATGGATGCCTCAAATCC TTTCTTCAAATAACCAAGTGGAAAGGCCCGGAGGTGATATATTTTGGAGATCACCTATTTAGCGACTTAAGAGGGCCCTC AAAGGCAGGTTGGCGCACCGCCGCCATTATACATGAACTGGAGAATGAAATACAAATACAAAATGAAGATACCTACCGCT TTGAGCAGGCAAAGTTTCATATAATACAGGAGCTACTCGGTAAGTTGCATGCAACTGCAGCTAATAGTCTGAGAACTGCA GCTTGCAATTCGCTTCTGGAAGAACTTAATGTGGAGAGACTAAAAGCACGCAACAAGATGAAGATGATGTTTAACAGATC TTTTGGAGCTACATTCCTAACTAGCACAGGGCAAGAATCTGCTTTTGCTCATAACATTCACCAGTATGCAGATGTTTATA CCAGTAAGCCAGAGAATTTTCTTCTCCATTCACCTGAAGCATGGCTTCATGTTCCGTTTGATGTCAAGATCATGCCTCAT CATGTCAAGGTTGCGTCAAATTTGTTCAAAACTGGATGA
Protein sequence (LotjaGi4g1v0292500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKMNPKGIYVNKNLRLDNLQVYGFDYDYTLAHYSTHLQTLIYDLAKEYMVNEVSSNHLSRAVCFYNCGCSFSYSFCCLF QLRYPEICMGFKYDAAFPIRGLCYDKSKGCLLKLDFFGSIEPDGCYYGRRRLSPKEIRDIYGTRHIGRDQARSLVGLMDF FCFSEACLLADIVQYFVDAKLEFDASYIYEDVVRAIEHVHRSGIVHQGILSDPHKYLVKNGKILCFLKMLRERGKKLFLL TNSPYHFVDGGMRFMLEDSMDCRDSWTELFDVVIAKANKPQFYTSEHPFRCYDTQKDTLTFTKVDKFHQDKIYYHGCLKS FLQITKWKGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELENEIQIQNEDTYRFEQAKFHIIQELLGKLHATAANSLRTA ACNSLLEELNVERLKARNKMKMMFNRSFGATFLTSTGQESAFAHNIHQYADVYTSKPENFLLHSPEAWLHVPFDVKIMPH HVKVASNLFKTG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 1 | 61 | 61 | 4.0E-17 | ||
SUPERFAMILY | 5 | 482 | 478 | 1.04E-118 | ||
PANTHER | 5 | 484 | 480 | 8.6E-225 | ||
PANTHER | 5 | 484 | 480 | 8.6E-225 | – | |
Pfam | 9 | 54 | 46 | 3.7E-14 | ||
CDD | 10 | 360 | 351 | 4.67435E-138 | – | |
PIRSF | 71 | 491 | 421 | 7.5E-134 | ||
Pfam | 78 | 482 | 405 | 5.7E-119 | ||
TIGRFAM | 81 | 374 | 294 | 3.9E-106 | ||
Gene3D | 192 | 386 | 195 | 3.3E-48 | ||
Coils | 406 | 426 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0292500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…