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LotjaGi4g1v0309700.2

Overview

Field Value
Gene ID LotjaGi4g1v0309700
Transcript ID LotjaGi4g1v0309700.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10; TrEMBL-Plants: tr|A0A0U2V489|A0A0U2V489_LOTJA Cytokinin oxidase/dehydrogenase 2; Found in the gene: LotjaGi4g1v0309700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:68577416..68583233) extracted from Lotus japonicus Gifu genome v1.2.

AAGAAAATTCACAGATCCAATGCTTTACAACTTAACAGTTAACAAGGCGTGCAAAGCGCGCGCAATAGTATATGCACGAC GTCGTTTACATACCCTCAAGTTTCCTATATATAGGTAACAAGAAAACTCTCATAACCAATTCAAGGCAATAAATAGTGCA CTACCAAATTCAACTCCTTTTAATTTCTCTCCACAAATGGCAAGGCACTATACACTTTCAAAAGCTTTAATTTTGCTATG GCTTAATACCATAGTGCACACACATGTACTATCGCAACCATGGTCACCACTAGATGCACCTAAAGAAATAGCCCAGCAAC TTATTCGTGACCCTGTGATCCTTTCACTAGCCTCAACCGATTTCGGCCACATAGTTCACAAAAACCCGTTTGCGATTTTC ACTCCGTCGTCCGTTAAGGACATTTCCAAATTGATAAAATTCTCAAAAACTCTTCCCATTCCGTTCACTATAGCTCCAAG AGGGCAAGCTCACTCGCTTCGTGGACAAGCCATGACAAACAATGGGCTTGTGGTGAATATGACTGCATTGAATGAGTTTA GAAATGGGAGTGGGATTGTGGTGTTTGATAAGGAAACTCCTCCATATGTAGATGTTCGGGGTGGGCAAATTTGGATTGAT GTGCTTCATGCTACGCTTCAACATGGACTTACACCCCTCTCTTGGACTGACTACTTGTATCTATCAGTTGGTGGAACTCT CTCCAATGCTGGGATTAGTGGCCAAACCTTTCGATTCGGTCCTCAGATTTCCAATGTTCATGAATTGGATGTTGTTACGG GTACGGGTTATTCTTTTCCCTAATAACTTTTTCTTAATGAGTTTTAAATTTTAAATTTATGATAGTGAAATTTGTATGAC TAAGACAAAAAAAAAAATCACATATAAAAGTTTTCGAAAGGCAATATAAAGGTATCATTTTCACACAAATTATACACACT TAAAAAAGTGTTTAGATATTATTTGATAACTTTAATAACTTAGTATTTAGATTATATTAATTATATGTTTGATTCTCCTT AGATAATGTCTCGAGATCAAGTGTGGAAGTACTGCTCTAGATGTTTTCCGCCTATGTATATGATTGTTTCACGTGAAGAA TACATAGTTGTAGAGAAAAACAACTGAATAATTTGGTAATCACATGTTAGTTAATTCAATAACATGTAATAAGTGGGCAA TCTACAACCTAAAAAAAGAATTAAAGAGATATACACCGTCAGTGTAAACAGATTTTACACAGTCATTCAATTGAATTATG CCACATCATCAAATAAACCTTTGCTTTAATTAAAATTTAAAATGAAAGTTATTATTCCTCTTACATTACATGTTGTGATT GGTTGTCAGTGTAAAACTGGTTTACACCGACCATGCATATCCATGAAACTCGTAAAAAAAACTATATTCATAATTAAATC ATAACTAAAAGATTTTTGAAGCTAATTGAGTATTATAGTTAGTAACTATATTAGTTTCAATAAATTCGAACAAACTCAAA CTAAATTTTTTTATTGGTTCAAATATTTAAACACCCAAAATCTTTAACCCAATCCAATTACACCACTAAACTCACTTTTG GGATTTGCCCTAGACAAATCCGTAATAAGAAGTTATTATTAGGTTTTAAACTGGAGTTATTCTTTGAATTAATATTTAAA CTTGGCTGCAGCAGCATATGTCAAGGTTATTTTGTGGGTTCCATGGTTGTTGGATTAAGCCTTTGGTGGGGGTTGTGCTA TTTGTGTGGGGTGTCATGTTGGGGTATTATAATAATCATGTTGATTGACATGCCTGTAGAGTACATGTTGTACTCTTTTT TTTTTACCTAGATTTTCATTGAATTTTTCCTAGGAATATTTTAATGAGGCACAATATTCTCTATGTTTTAACTTGCCTGG GAGGTTTTTTTTTTTTAGCTAGTGTCCTATCTCTTGAGGGGGTTGCCCTCAAATAATTTAATCATTCAAAATATATATAT ATATATATATATATATATATATATTGTTTAACAAAAACTCCGTAAGACTAGATGTTCTTTTTTTGAGGTAGATAAGATAC ATCATATATAAAAGATAATAAGTTGATTTTATTCAATCAAAACAGATTCAACGTATTACGTTGATCCAAGCCATATCTCA ATGTAAGTCACATCATATCTTTGTAGAAGATTTAATTTGTCTCTTTATCCAGTGAAATTTGACCATATCATTAATTAAAA GTAATATAGTATATAACGAAACAAAGAAAATTATAACATTAATAGATATTTAAAATTTATTCTGACTCTATATATAATAA AAATATAATTGCTATAGATGGTTGATTATTAATCGAATTTAAGTATTGATTAATAAAATGATTCATGAGAATGAAGTGTT GATGTATATGGTTTCATTAAGTTTAATAATGAAGTCTATTGGTATTTCTATCAGAAAAGAATAAAACTTGTCTACTTTAT ATTTTGGAGTAAAAAATAATGGAATTTGTTTAATTTTTTTTTATCAAAATAGTAATCATAATCATTTCTATTTCTATAAA AGATTTGTTTTTAATATCGTCCACCGTAAGCATATATGCTAGAATGTCTTTAAAAATGTCTTTGGTTTTTTGGTTTTGTT TTGATGTGCAATGTCTTGATTTTGCGCTAGTATTTTTATTTATTAATTTCGGGGTTCTTAGCATTTTTGTCCATTGACAA TCTTAATATATAAAATTAAAATTAATGTTATTGTCACGTGACTTCATCGTATATTTATAAGGATTCCATGTCAATGATTT GATTAAATCAAATTAAGATAGGCTGCGACATAAATACCACACCGTTACCGTTATTAACTAACTATTTATGTGGACCTACC TGAGCCAATAAATTGTTGGCACAACAGATTTAATTCTTTTTCTTTTGTATCGCAATGTAGTATTTTCCTTTCTAATGAAT GTTATCTCTCCACATTAACAATTGTATTTGTTTCCCTGTTTAATTTAAAGAAAGTCCACTTTTAATAAATTAGAAGTAAA CTCTTTTTGAGGTCTAAGGAGTGATCTACTACACCATATGCTAGAAAAAGAGGTCTATTCTGCCTCCAAAAATATTTTTG TTTTAAGGGAAATTTCCTAGTTTTTACTATTTAATAATAATAATAATGGTAGGAGCTGGGGACATATGGGTTGGGTAGGG GTGCAGAGATCGATTCCTGGCAGGTGCAATTTATCTTTCCGATGTAAAAAAAAAAACTACATAAAAGAAAAGAAGTTATC TATTAAAAAGACTACCATAATTTTCCTGAATGTGCAAAAGGAATCTGGTTCAAAATGAAGGATTTTGTTATATTTTACTT ATTGTAGAAATTAAGCCCTTTTGGGCTTTTTGGTGAGGCTGCGTGTCCAGTTTTAGAGGGGTGGGTTATTGGTCTTTTGT TTCATCTTTCCCTTATTTCTTGAAATCTTTTTCTACTTTTTTTTTCTTGTATTTAGAATTGAAATACCCCTAGTATTTCT TCTCTGCATTAATACAATAACTTGCTTATAAAAAAAGAAAAAGAAATTAAGCCCTATTGTCCTTTAAGAAACTTATGGTC ATAACTCATAACTCATACATCTTTAATGTATATGTTTTCTTTTGCAACACTTAATAATATACATGTTTATACTCTAATTC TGCAGGGAAAGGTGACACCGTGACTTGTTCTACAAAGAAAAACTCAGATTTATTTTACGCCGTTCTTGGAGGATTGGGCC AATTTGGGATTATAACCAGAGCAAGAATAGCTCTTGGACCTGCACCTACTAGGGCAAGTATCATTCTCATCTCAGTTCCT ATTTCTCTTTTCACAGAAAAAAAAAGCAATTAATACAATTAATCAATTAAAATTACTTTTAAAACATTTAACTTTTTTTA ACTATTTAATTGCGGGGACTTTATTCTAGCATTTGAAAATAATTTAGTGGACTATTTACATAAACAAATAATAGAAACAA ACTTTTTGGACTCCCTCAACAGATAGAGAAAACAGAGGCTTTGACAAATATACTAGCTAGTCTTTTGAATAAAGGAAAAA CAGATATTATACATGAATCTTTCTTGTTAGGTTGTCACAATCACAATCAGTTCTTGCTAGTACTTCATTATTACAAGTCA AACATAGAAAAATGTTTAATCATATGATCCTTAATTAATAACAAAATGGATTGTTTAATTGCTTTCAGGCGAAGTGGCTC CGTTTATTGTACAATGACTTCTCTGCATTTTCTAGAGACCAAGAACATTTAATCTCATTCAATGGAAGAAACGATACGAA TGCACCTGATTATGTTGAAGGCCAACTTCTGCTGAATCAACCGTCACAGGCCCTATCATTCTATCCAGGATCTGATCAAC CACGCATAACTTCACTAATAACCCAATTTGGCATCATCTATATCATAGAACTTGTCAAATACTACGATGATAGTTCTGAA GATCACATTGACCAAGTAATTAATTTAATCATGCTCTTTTCATTTCTTAAGTTTGGAAGCATTTTTTTATGATTATAGTT TATTGGAAAGATTTGACTTACATGTTCTATTGTGGTTTTCTTGGATTTATAGGAAATTGAACTTTTGACTCAGGGATTAA AGTTTGTTCCTACGTTTATGTTCGAAAAGGATGTCTCGTACGAACAGTTTCTGAACAGAGTTCATGATGATGAGCTTCTT CTCAGGTCACAAGGATTGTGGGATGTTCCACATCCTTGGTTAAACCTCTTTGTTCCAGCATCTAGAATCTCTGATTTTGA TGAAGGTGTGTTCAAGGGCATAATTCTAAAGCAAAATATAACAGCAGGGCTTGTGCTAATCTACCCCATGAACAAAACAA AGTAAGTTTTATGACATTGATTACAGATATTGAATACTATGTATATGTTAATTTGTGGGCTTATCTTTCAAAAAAAAATT GTGGGGATTAATTAATAGAGTTAATTAAAGAATTTCAATAGGTAAACATACAATTCTGACCGACATTCATCCAACATATG ACTTAGTGGCAATTAACTGCCACTATCATTAGCAGAGTGGTTACAAACTGCCGCTAAATTGCATGTCGGGTGAATGTCAC ACTAGACCTGTAATTTGGCGTAGCATTTTTCCTAATTAAAATGCATGAATTGCAGGTGGGATGACAAGATGTCAGCAGTT ACACCTGATGCAGATGTTTTCTATGTGATATCTTTTTTGCGTATAGCTAATTTTGAAACATTGGAAGCACTTCAAGTTCA AAACCAACAAATAATACAATTATGTGTGGATATTGGTATAGGGATGAAGCAATATCTTCCCCTAATCAAAACACAGGAAG AATGGGTGGCACAATATGGCCTCAAATGGAAAACCATCCAAGACAGAAAAATTCAATTTGATCCCAACAAAATATTGTCA CCTGGACAAGGGATTTTCAATTAGCTAAGAAAAAAATAAGAAGGTAGGTTCTAAGTTCCTGTTTCTTATTTAATCTTTTT TATATTAATTTGTTGTACAGTAATTGAATAAGCAGTTCAAGAAATAAATTTGTATGATGAATTGGATTGCTTTCACTTGA TCTTGTCTTTTATTTCTCTTAAGGGTAAATTAGGTTAGTAGCCTAGTAGTTATATTGTTATCCTCAATTGTATATAAAGT ATTGTGATGTCACATGTATGATCACCCTTAATTCCAGTGATAGATTTGTTAGTGTAAATTGTAATTTTTTCATTATGATA TGTCACTAAAAAAATTGAGCTGTTTGCTCTCATTAAGATTTCTTCTTTATTTTCTGAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0309700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAAGGCACTATACACTTTCAAAAGCTTTAATTTTGCTATGGCTTAATACCATAGTGCACACACATGTACTATCGCA ACCATGGTCACCACTAGATGCACCTAAAGAAATAGCCCAGCAACTTATTCGTGACCCTGTGATCCTTTCACTAGCCTCAA CCGATTTCGGCCACATAGTTCACAAAAACCCGTTTGCGATTTTCACTCCGTCGTCCGTTAAGGACATTTCCAAATTGATA AAATTCTCAAAAACTCTTCCCATTCCGTTCACTATAGCTCCAAGAGGGCAAGCTCACTCGCTTCGTGGACAAGCCATGAC AAACAATGGGCTTGTGGTGAATATGACTGCATTGAATGAGTTTAGAAATGGGAGTGGGATTGTGGTGTTTGATAAGGAAA CTCCTCCATATGTAGATGTTCGGGGTGGGCAAATTTGGATTGATGTGCTTCATGCTACGCTTCAACATGGACTTACACCC CTCTCTTGGACTGACTACTTGTATCTATCAGTTGGTGGAACTCTCTCCAATGCTGGGATTAGTGGCCAAACCTTTCGATT CGGTCCTCAGATTTCCAATGTTCATGAATTGGATGTTGTTACGGGGAAAGGTGACACCGTGACTTGTTCTACAAAGAAAA ACTCAGATTTATTTTACGCCGTTCTTGGAGGATTGGGCCAATTTGGGATTATAACCAGAGCAAGAATAGCTCTTGGACCT GCACCTACTAGGGCAAGCGAAGTGGCTCCGTTTATTGTACAATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0309700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARHYTLSKALILLWLNTIVHTHVLSQPWSPLDAPKEIAQQLIRDPVILSLASTDFGHIVHKNPFAIFTPSSVKDISKLI KFSKTLPIPFTIAPRGQAHSLRGQAMTNNGLVVNMTALNEFRNGSGIVVFDKETPPYVDVRGGQIWIDVLHATLQHGLTP LSWTDYLYLSVGGTLSNAGISGQTFRFGPQISNVHELDVVTGKGDTVTCSTKKNSDLFYAVLGGLGQFGIITRARIALGP APTRASEVAPFIVQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 26 26 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 9 9 - –
SignalP_EUK
SignalP-noTM
1 22 22 - –
PANTHER
PTHR13878
7 245 239 2.3E-116 –
PANTHER
PTHR13878:SF115
7 245 239 2.3E-116 –
Phobius
SIGNAL_PEPTIDE_H_REGION
10 21 12 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
22 26 5 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
27 254 228 - –
SUPERFAMILY
SSF56176
41 240 200 2.38E-42
IPR036318
Gene3D
G3DSA:3.30.43.10
50 114 65 2.6E-94
IPR016167
ProSiteProfiles
PS51387
60 241 182 15.936
IPR016166
Pfam
PF01565
66 210 145 6.7E-20
IPR006094
Gene3D
G3DSA:3.30.465.10
115 243 129 2.6E-94
IPR016169

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0050660
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of
GO:0071949
Molecular function FAD binding Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0309700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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