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IPR016167

Source: InterPro

Description

IPR016167 is a FAD-binding, type PCMH, subdomain 1.

<p>According to structural similarities and conserved sequence motifs, FAD-binding domains have been grouped in three main families: (i) the ferredoxin reductase (FR)-type FAD-binding domain, (ii) the FAD-binding domains that adopt a Rossmann fold and (iii) the p-cresol methylhydroxylase (PCMH)-type FAD-binding domain [[cite:PUB00019097]].</p> <p>The PCMH-type FAD-binding domain consists of two α-β subdomains: one is composed of three parallel β-strands (B1-B3) surrounded by α-helices, and is packed against the second subdomain containing five antiparallel β-strands (B4-B8) surrounded by α-helices [[cite:PUB00021418]]. The two subdomains accommodate the FAD cofactor between them [[cite:PUB00043766]]. This superfamily represents the first (N-terminal) subdomain, which is found in:</p> <ul> <li>FAD-linked oxidases (N-terminal domain), such as vanillyl-alochol oxidase ([ec:1.1.3.38]) [[cite:PUB00030304]], flavoprotein subunit of p-cresol methylhydroxylase ([ec:1.17.99.1]) [[cite:PUB00032326]], D-lactate dehydrogenases ([ec:1.1.1.28], [ec:1.1.2.4] -cytochrome) [[cite:PUB00024738]], Cholesterol oxidases ([ec:1.1.3.6]) [[cite:PUB00025871]], Cytokinin dehydrogenase 1 ([ec:1.5.99.12]) [[cite:PUB00032155]].</li> <li>Uridine diphospho-N-acetylenolpyruvylglucosamine reductase (MurB) (N-terminal domain) [[cite:PUB00031941]].</li> <li>CO dehydrogenase flavoprotein (N-terminal domain; [[cite:PUB00036706]]) family.</li> </ul>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 64

Transcript Name Description Predicted domains Domain count
Lj0g3v0056099.1
– PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502141966|ref|XP_004504726.1|
Domains
19
Lj0g3v0360459.1
– PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] gi|356545727|ref|XP_003541287.1|
Domains
21
Lj0g3v0360469.1
– Cytokinin dehydrogenase [Medicago truncatula] gi|357449805|ref|XP_003595179.1|
Domains
13
Lj1g3v4226830.1
– PREDICTED: cytokinin dehydrogenase 1-like [Cicer arietinum] gi|502108374|ref|XP_004493454.1|
Domains
19
Lj1g3v4763480.1
– PREDICTED: D-lactate dehydrogenase [cytochrome] gi|356505459|ref|XP_003521508.1|
Domains
17
Lj1g3v5060530.1
– PREDICTED: L-gulonolactone oxidase-like [Glycine max] gi|356506098|ref|XP_003521824.1|
Domains
21
Lj1g3v5060540.1
– PREDICTED: LOW QUALITY PROTEIN: L-gulonolactone oxidase-like, partial [Glycine max] gi|356571262|ref|XP_003553798.1|
Domains
22
Lj2g3v1728750.1
– PREDICTED: d-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Cicer arietinum] gi|502161240|ref|XP_004512090.1|
Domains
17
Lj3g3v0462000.1
– PREDICTED: L-gulonolactone oxidase-like isoform X1 [Cicer arietinum] gi|502124309|ref|XP_004498473.1|
Domains
11
Lj3g3v0809870.1
LjCkx8 PREDICTED: cytokinin dehydrogenase 6-like [Glycine max] gi|356539470|ref|XP_003538221.1|
Domains
23
Lj3g3v1694660.1
– PREDICTED: xanthine dehydrogenase 1-like isoform X2 [Cicer arietinum] gi|502081768|ref|XP_004486962.1|
Domains
39
Lj3g3v1932900.1
– PREDICTED: reticuline oxidase-like protein-like [Glycine max] gi|356515398|ref|XP_003526387.1|
Domains
20
Lj3g3v3650360.1
LjCkx6 PREDICTED: cytokinin dehydrogenase 6-like [Glycine max] gi|356542934|ref|XP_003539919.1|
Domains
23
Lj4g3v0287320.1
– PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502141956|ref|XP_004504721.1|
Domains
21
Lj4g3v0287330.1
– PREDICTED: reticuline oxidase-like protein-like [Glycine max] gi|356512143|ref|XP_003524780.1|
Domains
21
Lj4g3v0288350.1
– PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502141960|ref|XP_004504723.1|
Domains
19
Lj4g3v0299460.1
– PREDICTED: reticuline oxidase-like protein-like isoform 1 [Glycine max] gi|356533127|ref|XP_003535119.1|
Domains
21
Lj4g3v0299470.1
– PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Glycine max] gi|356558077|ref|XP_003547335.1|
Domains
12
Lj4g3v0447770.1
– Reticuline oxidase-like protein [Medicago truncatula] gi|357475915|ref|XP_003608243.1|
Domains
16
Lj4g3v2171460.1
LjCkx2 PREDICTED: cytokinin dehydrogenase 3-like [Cicer arietinum] gi|502150402|ref|XP_004507936.1|
Domains
23
Lj4g3v2641050.1
LjCkx1 PREDICTED: cytokinin dehydrogenase 1-like [Cicer arietinum] gi|502108374|ref|XP_004493454.1|
Domains
19
Lj5g3v0692300.1
LjCkx3 PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] gi|356558359|ref|XP_003547474.1|
Domains
23
Lj5g3v0931500.1
– Mitochondrial L-galactono-1,4-lactone dehydrogenase [Lotus japonicus] gi|91982114|gb|ABE68384.1|
Domains
21
Lj5g3v1208450.1
– PREDICTED: reticuline oxidase-like [Glycine max] gi|356533725|ref|XP_003535410.1|
Domains
20
Lj5g3v1208470.1
–
Domains
16
Lj5g3v2238670.1
– PREDICTED: LOW QUALITY PROTEIN: cytokinin dehydrogenase 5-like [Glycine max] gi|356509660|ref|XP_003523564.1|
Domains
17
Lj5g3v2238680.1
LjCkx5 PREDICTED: LOW QUALITY PROTEIN: cytokinin dehydrogenase 5-like [Glycine max] gi|356509660|ref|XP_003523564.1|
Domains
25
Lj6g3v1249630.1
LjCkx4 FAD linked oxidase, N-terminal [Medicago truncatula] gi|124360772|gb|ABN08744.1|
Domains
26
Lj6g3v1629440.1
– PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Glycine max] gi|356558077|ref|XP_003547335.1|
Domains
12
LotjaGi1g1v0423200.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT1G75450.1 cytokinin oxidase 5; Swiss-Prot: sp|Q67YU0|CKX5_ARATH Cytokinin dehydrogenase 5; TrEMBL-Plants: tr|A0A0U2UUJ0|A0A0U2UUJ0_LOTJA Cytokinin oxidase/dehydrogenase 5; Found in the gene: LotjaGi1g1v0423200
Domains
26
LotjaGi1g1v0624400.1
– FAD-binding Berberine family protein; TAIR: AT1G34575.1 FAD-binding Berberine family protein; Swiss-Prot: sp|F4HV09|BBE14_ARATH Berberine bridge enzyme-like 14; TrEMBL-Plants: tr|A0A151QMW8|A0A151QMW8_CAJCA Reticuline oxidase-like protein; Found in the gene: LotjaGi1g1v0624400
Domains
21
LotjaGi1g1v0624400.2
– FAD-binding Berberine family protein; TAIR: AT1G34575.1 FAD-binding Berberine family protein; Swiss-Prot: sp|F4HV09|BBE14_ARATH Berberine bridge enzyme-like 14; TrEMBL-Plants: tr|A0A151QMW8|A0A151QMW8_CAJCA Reticuline oxidase-like protein; Found in the gene: LotjaGi1g1v0624400
Domains
21
LotjaGi1g1v0669700.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT2G41510.1 cytokinin oxidase/dehydrogenase 1; Swiss-Prot: sp|O22213|CKX1_ARATH Cytokinin dehydrogenase 1; TrEMBL-Plants: tr|A0A0U2UHS9|A0A0U2UHS9_LOTJA Cytokinin oxidase/dehydrogenase 1; Found in the gene: LotjaGi1g1v0669700
Domains
20
LotjaGi2g1v0385200.1
– D-2-hydroxyglutarate dehydrogenase, mitochondrial; TAIR: AT4G36400.1 FAD-linked oxidases family protein; Swiss-Prot: sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|G7KGB4|G7KGB4_MEDTR D-2-hydroxyglutarate dehydrogenase; Found in the gene: LotjaGi2g1v0385200
Domains
20
LotjaGi2g1v0385200.2
– D-2-hydroxyglutarate dehydrogenase, mitochondrial; TAIR: AT4G36400.1 FAD-linked oxidases family protein; Swiss-Prot: sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|A0A0R0HMH0|A0A0R0HMH0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385200
Domains
13
LotjaGi3g1v0054600.1
– L-gulonolactone oxidase; TAIR: AT5G11540.1 D-arabinono-1,4-lactone oxidase family protein; Swiss-Prot: sp|Q9LYD8|GGLO3_ARATH L-gulonolactone oxidase 3; TrEMBL-Plants: tr|A0A0S3RMW2|A0A0S3RMW2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054600
Domains
20
LotjaGi3g1v0117100.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT3G63440.1 cytokinin oxidase/dehydrogenase 6; Swiss-Prot: sp|Q9LY71|CKX6_ARATH Cytokinin dehydrogenase 6; TrEMBL-Plants: tr|A0A0U2VEG5|A0A0U2VEG5_LOTJA Cytokinin oxidase/dehydrogenase 8; Found in the gene: LotjaGi3g1v0117100
Domains
24
LotjaGi3g1v0331500.1
– FAD-binding Berberine family protein, putative; TAIR: AT4G20860.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SUC6|BBE22_ARATH Berberine bridge enzyme-like 22; TrEMBL-Plants: tr|I1KFV4|I1KFV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0331500
Domains
23
LotjaGi3g1v0546100.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT3G63440.1 cytokinin oxidase/dehydrogenase 6; Swiss-Prot: sp|Q9LY71|CKX6_ARATH Cytokinin dehydrogenase 6; TrEMBL-Plants: tr|A0A0U2T9H6|A0A0U2T9H6_LOTJA Cytokinin oxidase/dehydrogenase 6; Found in the gene: LotjaGi3g1v0546100
Domains
24
LotjaGi4g1v0027200.1
– FAD-binding berberine family protein; TAIR: AT1G30760.2 FAD-binding Berberine family protein; Swiss-Prot: sp|Q93ZA3|BBE13_ARATH Berberine bridge enzyme-like 13; TrEMBL-Plants: tr|A0A072UQL2|A0A072UQL2_MEDTR FAD-binding berberine family protein; Found in the gene: LotjaGi4g1v0027200
Domains
21
LotjaGi4g1v0027200.2
– FAD-binding berberine family protein; TAIR: AT5G44400.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9FKU8|BBE26_ARATH Berberine bridge enzyme-like 26; TrEMBL-Plants: tr|A0A072UQL2|A0A072UQL2_MEDTR FAD-binding berberine family protein; Found in the gene: LotjaGi4g1v0027200
Domains
21
LotjaGi4g1v0027200.3
– FAD-binding berberine family protein; TAIR: AT1G30760.2 FAD-binding Berberine family protein; Swiss-Prot: sp|Q93ZA3|BBE13_ARATH Berberine bridge enzyme-like 13; TrEMBL-Plants: tr|I1K2X6|I1K2X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0027200
Domains
21
LotjaGi4g1v0049000.1
– FAD-binding berberine family protein; TAIR: AT1G26400.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9FZC6|FOX3_ARATH Berberine bridge enzyme-like 5; TrEMBL-Plants: tr|V7CM27|V7CM27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0049000
Domains
19
LotjaGi4g1v0049100.1
– FAD-binding berberine family protein; TAIR: AT4G20800.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SVG7|BBE17_ARATH Berberine bridge enzyme-like 17; TrEMBL-Plants: tr|I1KQQ2|I1KQQ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0049100
Domains
20
LotjaGi4g1v0050600.1
– FAD-binding berberine family protein; TAIR: AT1G26420.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9FZC8|FOX5_ARATH Berberine bridge enzyme-like 7; TrEMBL-Plants: tr|A0A072U6E7|A0A072U6E7_MEDTR FAD-binding berberine family protein; Found in the gene: LotjaGi4g1v0050600
Domains
20
LotjaGi4g1v0309700.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10; TrEMBL-Plants: tr|A0A0U2V489|A0A0U2V489_LOTJA Cytokinin oxidase/dehydrogenase 2; Found in the gene: LotjaGi4g1v0309700
Domains
18
LotjaGi4g1v0309700.2
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10; TrEMBL-Plants: tr|A0A0U2V489|A0A0U2V489_LOTJA Cytokinin oxidase/dehydrogenase 2; Found in the gene: LotjaGi4g1v0309700
Domains
18
LotjaGi4g1v0309700.3
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2V489|A0A0U2V489_LOTJA Cytokinin oxidase/dehydrogenase 2; Found in the gene: LotjaGi4g1v0309700
Domains
24
LotjaGi4g1v0309900.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|I3T7E3|I3T7E3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0309900
Domains
22
LotjaGi4g1v0310100.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|H7BRI4|H7BRI4_SOYBN Cytokinin dehydrogenase 3; Found in the gene: LotjaGi4g1v0310100
Domains
20
LotjaGi5g1v0046100.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G21482.1 cytokinin oxidase 7; Swiss-Prot: sp|Q9FUJ1|CKX7_ARATH Cytokinin dehydrogenase 7; TrEMBL-Plants: tr|A0A0U2T7D7|A0A0U2T7D7_LOTJA Cytokinin oxidase/dehydrogenase 7; Found in the gene: LotjaGi5g1v0046100
Domains
19
LotjaGi5g1v0133000.1
– L-galactono-1,4-lactone dehydrogenase; TAIR: AT3G47930.1 L-galactono-1,4-lactone dehydrogenase; Swiss-Prot: sp|Q9SU56|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial; TrEMBL-Plants: tr|Q0ZHB8|Q0ZHB8_LOTJA Mitochondrial L-galactono-1,4-lactone dehydrogenase; Found in the gene: LotjaGi5g1v0133000
Domains
24
LotjaGi5g1v0133000.2
– L-galactono-1,4-lactone dehydrogenase; TAIR: AT3G47930.1 L-galactono-1,4-lactone dehydrogenase; Swiss-Prot: sp|Q9SU56|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial; TrEMBL-Plants: tr|Q0ZHB8|Q0ZHB8_LOTJA Mitochondrial L-galactono-1,4-lactone dehydrogenase; Found in the gene: LotjaGi5g1v0133000
Domains
22
LotjaGi5g1v0133000.3
– L-galactono-1,4-lactone dehydrogenase; TAIR: AT3G47930.1 L-galactono-1,4-lactone dehydrogenase; Swiss-Prot: sp|Q9SU56|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial; TrEMBL-Plants: tr|Q0ZHB8|Q0ZHB8_LOTJA Mitochondrial L-galactono-1,4-lactone dehydrogenase; Found in the gene: LotjaGi5g1v0133000
Domains
24
LotjaGi5g1v0194900.1
– FAD-binding berberine family protein; TAIR: AT5G44390.1 FAD-binding Berberine family protein; Swiss-Prot: sp|P93479|RETO_PAPSO Reticuline oxidase; TrEMBL-Plants: tr|I1LC19|I1LC19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0194900
Domains
20
LotjaGi5g1v0195000.1
– FAD-binding berberine family protein; TAIR: AT5G44400.1 FAD-binding Berberine family protein; Swiss-Prot: sp|P93479|RETO_PAPSO Reticuline oxidase; TrEMBL-Plants: tr|I1NID0|I1NID0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0195000
Domains
20
LotjaGi6g1v0172500.1
– FAD-binding berberine family protein; TAIR: AT1G30700.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SA85|BBE8_ARATH Berberine bridge enzyme-like 8; TrEMBL-Plants: tr|I3S2I4|I3S2I4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0172500
Domains
22
LotjaGi6g1v0231200.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2V8L5|A0A0U2V8L5_LOTJA Cytokinin oxidase/dehydrogenase 3; Found in the gene: LotjaGi6g1v0231200
Domains
24
LotjaGi6g1v0231200.2
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2V8L5|A0A0U2V8L5_LOTJA Cytokinin oxidase/dehydrogenase 3; Found in the gene: LotjaGi6g1v0231200
Domains
16
LotjaGi6g1v0231300.1
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10; TrEMBL-Plants: tr|A0A0U2UQP8|A0A0U2UQP8_LOTJA Cytokinin oxidase/dehydrogenase 4; Found in the gene: LotjaGi6g1v0231300
Domains
20
LotjaGi6g1v0231300.2
– Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2UQP8|A0A0U2UQP8_LOTJA Cytokinin oxidase/dehydrogenase 4; Found in the gene: LotjaGi6g1v0231300
Domains
26
LotjaGi6g1v0266700.1
– FAD-binding berberine family protein; TAIR: AT1G30700.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SA85|BBE8_ARATH Berberine bridge enzyme-like 8; TrEMBL-Plants: tr|I3S2I4|I3S2I4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0266700
Domains
22
LotjaGi6g1v0267900.1
– FAD-binding berberine family protein; TAIR: AT1G30760.2 FAD-binding Berberine family protein; Swiss-Prot: sp|Q93ZA3|BBE13_ARATH Berberine bridge enzyme-like 13; TrEMBL-Plants: tr|I1L0H6|I1L0H6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0267900
Domains
21
LotjaGi6g1v0267900.2
– FAD-binding berberine family protein; TAIR: AT1G30760.2 FAD-binding Berberine family protein; Swiss-Prot: sp|Q93ZA3|BBE13_ARATH Berberine bridge enzyme-like 13; TrEMBL-Plants: tr|I1L0H6|I1L0H6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0267900
Domains
21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SignalP-noTM SignalP_GRAM_NEGATIVE 1 1.56