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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016167
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 64 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.353s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0809870.1
LjCkx8 PREDICTED: cytokinin dehydrogenase 6-like [Glycine max] gi|356539470|ref|XP_003538221.1| chr3 9845762 9848884 -
2 domain predictions
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Lj3g3v3650360.1
LjCkx6 PREDICTED: cytokinin dehydrogenase 6-like [Glycine max] gi|356542934|ref|XP_003539919.1| chr3 44514871 44518966 +
2 domain predictions
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Lj4g3v2171460.1
LjCkx2 PREDICTED: cytokinin dehydrogenase 3-like [Cicer arietinum] gi|502150402|ref|XP_004507936.1| chr4 29817085 29822610 +
2 domain predictions
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Lj4g3v2641050.1
LjCkx1 PREDICTED: cytokinin dehydrogenase 1-like [Cicer arietinum] gi|502108374|ref|XP_004493454.1| chr4 35942025 35944954 +
2 domain predictions
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Lj5g3v0692300.1
LjCkx3 PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] gi|356558359|ref|XP_003547474.1| chr5 10137598 10141548 +
2 domain predictions
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Lj5g3v2238680.1
LjCkx5 PREDICTED: LOW QUALITY PROTEIN: cytokinin dehydrogenase 5-like [Glycine max] gi|356509660|ref|XP_003523564.1| chr5 32118144 32122298 +
2 domain predictions
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Lj6g3v1249630.1
LjCkx4 FAD linked oxidase, N-terminal [Medicago truncatula] gi|124360772|gb|ABN08744.1| chr6 15350730 15354064 -
2 domain predictions
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Lj0g3v0056099.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502141966|ref|XP_004504726.1| chr0 18201352 18211981 -
2 domain predictions
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Lj0g3v0360459.1
n.a. PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] gi|356545727|ref|XP_003541287.1| chr0 189837718 189840862 +
2 domain predictions
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Lj0g3v0360469.1
n.a. Cytokinin dehydrogenase [Medicago truncatula] gi|357449805|ref|XP_003595179.1| chr0 189837718 189841788 +
2 domain predictions
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Lj1g3v4226830.1
n.a. PREDICTED: cytokinin dehydrogenase 1-like [Cicer arietinum] gi|502108374|ref|XP_004493454.1| chr1 49900784 49903713 +
2 domain predictions
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Lj1g3v4763480.1
n.a. PREDICTED: D-lactate dehydrogenase [cytochrome] gi|356505459|ref|XP_003521508.1| chr1 57083721 57094167 -
2 domain predictions
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Lj1g3v5060530.1
n.a. PREDICTED: L-gulonolactone oxidase-like [Glycine max] gi|356506098|ref|XP_003521824.1| chr1 61838648 61842807 -
2 domain predictions
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Lj1g3v5060540.1
n.a. PREDICTED: LOW QUALITY PROTEIN: L-gulonolactone oxidase-like, partial [Glycine max] gi|356571262|ref|XP_003553798.1| chr1 61855061 61857484 -
2 domain predictions
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Lj2g3v1728750.1
n.a. PREDICTED: d-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Cicer arietinum] gi|502161240|ref|XP_004512090.1| chr2 26505075 26511668 -
2 domain predictions
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Lj3g3v0462000.1
n.a. PREDICTED: L-gulonolactone oxidase-like isoform X1 [Cicer arietinum] gi|502124309|ref|XP_004498473.1| chr3 5049553 5050222 +
2 domain predictions
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Lj3g3v1694660.1
n.a. PREDICTED: xanthine dehydrogenase 1-like isoform X2 [Cicer arietinum] gi|502081768|ref|XP_004486962.1| chr3 21618391 21625497 -
2 domain predictions
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Lj3g3v1932900.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Glycine max] gi|356515398|ref|XP_003526387.1| chr3 24898818 24899972 +
2 domain predictions
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Lj4g3v0287320.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502141956|ref|XP_004504721.1| chr4 3535656 3537662 -
2 domain predictions
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Lj4g3v0287330.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Glycine max] gi|356512143|ref|XP_003524780.1| chr4 3539756 3542422 -
2 domain predictions
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Lj4g3v0288350.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502141960|ref|XP_004504723.1| chr4 3558917 3561610 -
2 domain predictions
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Lj4g3v0299460.1
n.a. PREDICTED: reticuline oxidase-like protein-like isoform 1 [Glycine max] gi|356533127|ref|XP_003535119.1| chr4 3616612 3618691 -
2 domain predictions
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Lj4g3v0299470.1
n.a. PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Glycine max] gi|356558077|ref|XP_003547335.1| chr4 3627824 3630739 +
2 domain predictions
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Lj4g3v0447770.1
n.a. Reticuline oxidase-like protein [Medicago truncatula] gi|357475915|ref|XP_003608243.1| chr4 6016820 6018127 +
2 domain predictions
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Lj5g3v0931500.1
n.a. mitochondrial L-galactono-1,4-lactone dehydrogenase [Lotus japonicus] gi|91982114|gb|ABE68384.1| chr5 13975659 13989765 -
2 domain predictions
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Lj5g3v1208450.1
n.a. PREDICTED: reticuline oxidase-like [Glycine max] gi|356533725|ref|XP_003535410.1| chr5 19803987 19807373 +
2 domain predictions
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Lj5g3v1208470.1
n.a. n.a. chr5 19804407 19813420 -
2 domain predictions
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Lj5g3v2238670.1
n.a. PREDICTED: LOW QUALITY PROTEIN: cytokinin dehydrogenase 5-like [Glycine max] gi|356509660|ref|XP_003523564.1| chr5 32118144 32123121 +
2 domain predictions
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Lj6g3v1629440.1
n.a. PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Glycine max] gi|356558077|ref|XP_003547335.1| chr6 18306271 18309186 -
2 domain predictions
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LotjaGi1g1v0423200.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT1G75450.1 cytokinin oxidase 5; Swiss-Prot: sp|Q67YU0|CKX5_ARATH Cytokinin dehydrogenase 5; TrEMBL-Plants: tr|A0A0U2UUJ0|A0A0U2UUJ0_LOTJA Cytokinin oxidase/dehydrogenase 5; Found in the gene: LotjaGi1g1v0423200 LjG1.1_chr1 91712580 91723816 -
2 domain predictions
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LotjaGi1g1v0624400.1
n.a. FAD-binding Berberine family protein; TAIR: AT1G34575.1 FAD-binding Berberine family protein; Swiss-Prot: sp|F4HV09|BBE14_ARATH Berberine bridge enzyme-like 14; TrEMBL-Plants: tr|A0A151QMW8|A0A151QMW8_CAJCA Reticuline oxidase-like protein; Found in the gene: LotjaGi1g1v0624400 LjG1.1_chr1 117156258 117169706 -
2 domain predictions
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LotjaGi1g1v0624400.2
n.a. FAD-binding Berberine family protein; TAIR: AT1G34575.1 FAD-binding Berberine family protein; Swiss-Prot: sp|F4HV09|BBE14_ARATH Berberine bridge enzyme-like 14; TrEMBL-Plants: tr|A0A151QMW8|A0A151QMW8_CAJCA Reticuline oxidase-like protein; Found in the gene: LotjaGi1g1v0624400 LjG1.1_chr1 117159823 117167557 -
2 domain predictions
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LotjaGi1g1v0669700.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT2G41510.1 cytokinin oxidase/dehydrogenase 1; Swiss-Prot: sp|O22213|CKX1_ARATH Cytokinin dehydrogenase 1; TrEMBL-Plants: tr|A0A0U2UHS9|A0A0U2UHS9_LOTJA Cytokinin oxidase/dehydrogenase 1; Found in the gene: LotjaGi1g1v0669700 LjG1.1_chr1 123336927 123340402 +
2 domain predictions
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LotjaGi2g1v0385200.1
n.a. D-2-hydroxyglutarate dehydrogenase, mitochondrial; TAIR: AT4G36400.1 FAD-linked oxidases family protein; Swiss-Prot: sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|G7KGB4|G7KGB4_MEDTR D-2-hydroxyglutarate dehydrogenase; Found in the gene: LotjaGi2g1v0385200 LjG1.1_chr2 88139507 88146463 -
2 domain predictions
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LotjaGi2g1v0385200.2
n.a. D-2-hydroxyglutarate dehydrogenase, mitochondrial; TAIR: AT4G36400.1 FAD-linked oxidases family protein; Swiss-Prot: sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|A0A0R0HMH0|A0A0R0HMH0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385200 LjG1.1_chr2 88139959 88146031 -
2 domain predictions
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LotjaGi3g1v0054600.1
n.a. L-gulonolactone oxidase; TAIR: AT5G11540.1 D-arabinono-1,4-lactone oxidase family protein; Swiss-Prot: sp|Q9LYD8|GGLO3_ARATH L-gulonolactone oxidase 3; TrEMBL-Plants: tr|A0A0S3RMW2|A0A0S3RMW2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054600 LjG1.1_chr3 5705130 5708366 +
2 domain predictions
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LotjaGi3g1v0117100.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT3G63440.1 cytokinin oxidase/dehydrogenase 6; Swiss-Prot: sp|Q9LY71|CKX6_ARATH Cytokinin dehydrogenase 6; TrEMBL-Plants: tr|A0A0U2VEG5|A0A0U2VEG5_LOTJA Cytokinin oxidase/dehydrogenase 8; Found in the gene: LotjaGi3g1v0117100 LjG1.1_chr3 14351358 14356165 +
2 domain predictions
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LotjaGi3g1v0331500.1
n.a. FAD-binding Berberine family protein, putative; TAIR: AT4G20860.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SUC6|BBE22_ARATH Berberine bridge enzyme-like 22; TrEMBL-Plants: tr|I1KFV4|I1KFV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0331500 LjG1.1_chr3 70048035 70049913 +
2 domain predictions
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LotjaGi3g1v0546100.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT3G63440.1 cytokinin oxidase/dehydrogenase 6; Swiss-Prot: sp|Q9LY71|CKX6_ARATH Cytokinin dehydrogenase 6; TrEMBL-Plants: tr|A0A0U2T9H6|A0A0U2T9H6_LOTJA Cytokinin oxidase/dehydrogenase 6; Found in the gene: LotjaGi3g1v0546100 LjG1.1_chr3 96232473 96236973 +
2 domain predictions
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LotjaGi4g1v0027200.1
n.a. FAD-binding berberine family protein; TAIR: AT1G30760.2 FAD-binding Berberine family protein; Swiss-Prot: sp|Q93ZA3|BBE13_ARATH Berberine bridge enzyme-like 13; TrEMBL-Plants: tr|A0A072UQL2|A0A072UQL2_MEDTR FAD-binding berberine family protein; Found in the gene: LotjaGi4g1v0027200 LjG1.1_chr4 3290516 3297163 -
2 domain predictions
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LotjaGi4g1v0027200.2
n.a. FAD-binding berberine family protein; TAIR: AT5G44400.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9FKU8|BBE26_ARATH Berberine bridge enzyme-like 26; TrEMBL-Plants: tr|A0A072UQL2|A0A072UQL2_MEDTR FAD-binding berberine family protein; Found in the gene: LotjaGi4g1v0027200 LjG1.1_chr4 3290887 3292494 -
2 domain predictions
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LotjaGi4g1v0027200.3
n.a. FAD-binding berberine family protein; TAIR: AT1G30760.2 FAD-binding Berberine family protein; Swiss-Prot: sp|Q93ZA3|BBE13_ARATH Berberine bridge enzyme-like 13; TrEMBL-Plants: tr|I1K2X6|I1K2X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0027200 LjG1.1_chr4 3294525 3297163 -
2 domain predictions
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LotjaGi4g1v0049000.1
n.a. FAD-binding berberine family protein; TAIR: AT1G26400.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9FZC6|FOX3_ARATH Berberine bridge enzyme-like 5; TrEMBL-Plants: tr|V7CM27|V7CM27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0049000 LjG1.1_chr4 5949136 5950844 -
2 domain predictions
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LotjaGi4g1v0049100.1
n.a. FAD-binding berberine family protein; TAIR: AT4G20800.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SVG7|BBE17_ARATH Berberine bridge enzyme-like 17; TrEMBL-Plants: tr|I1KQQ2|I1KQQ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0049100 LjG1.1_chr4 5955503 5957094 -
2 domain predictions
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LotjaGi4g1v0050600.1
n.a. FAD-binding berberine family protein; TAIR: AT1G26420.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9FZC8|FOX5_ARATH Berberine bridge enzyme-like 7; TrEMBL-Plants: tr|A0A072U6E7|A0A072U6E7_MEDTR FAD-binding berberine family protein; Found in the gene: LotjaGi4g1v0050600 LjG1.1_chr4 6128779 6130456 +
2 domain predictions
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LotjaGi4g1v0309700.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10; TrEMBL-Plants: tr|A0A0U2V489|A0A0U2V489_LOTJA Cytokinin oxidase/dehydrogenase 2; Found in the gene: LotjaGi4g1v0309700 LjG1.1_chr4 68577416 68583233 +
2 domain predictions
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LotjaGi4g1v0309700.2
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10; TrEMBL-Plants: tr|A0A0U2V489|A0A0U2V489_LOTJA Cytokinin oxidase/dehydrogenase 2; Found in the gene: LotjaGi4g1v0309700 LjG1.1_chr4 68577416 68583233 +
2 domain predictions
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LotjaGi4g1v0309700.3
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2V489|A0A0U2V489_LOTJA Cytokinin oxidase/dehydrogenase 2; Found in the gene: LotjaGi4g1v0309700 LjG1.1_chr4 68577566 68583197 +
2 domain predictions
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LotjaGi4g1v0309900.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|I3T7E3|I3T7E3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0309900 LjG1.1_chr4 68607197 68610920 +
2 domain predictions
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LotjaGi4g1v0310100.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|H7BRI4|H7BRI4_SOYBN Cytokinin dehydrogenase 3; Found in the gene: LotjaGi4g1v0310100 LjG1.1_chr4 68634904 68641234 -
2 domain predictions
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