Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0322800 |
| Transcript ID | LotjaGi4g1v0322800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT1G19170.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|V7C8P1|V7C8P1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0322800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70095968..70101314) extracted from Lotus japonicus Gifu genome v1.2.
TTTATGATGATCTAGTAAAAAGTAATTGTGAAAATTGGCATATATGAAATTGTCAAAATTTAAGTGCACCCTTTTAAGGA TCCAAGACTTTCACCACACTGTTACCATATCATTGTCTTCCTAGGTACCAACTTTCACCAGTTCCAGTTCCAGTTCCAGT TCCCCAAACAAGTCTGTCATCTTCTTCCCTTTCAATTCACTCCTTCAATTTATTCCTCCTTTCTCACTCATTCCCTTCCA CTCCAATCTTGGAATCCATGAGCTTCGACCAAACCCACATCGTCAGCTGCTAAATCCAACTCCATCTCGCAAAAGGGTAG TTTCTTTTTTCTCAGTCGAATGATGGTGGAGACCTCAACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCT GGTTTCCGGCATTCTTGACATCGCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGG CAGAGGAACATAGTCGGTGGCTTCTTGGTCTTCGGCCGTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTT CAATTTGACGGATTTCGGAGGAGTGGGTGATGGGGTTACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTT CCAAATTGGGGAAGAAAGGTGGGGCCCAGCTCAATGTTCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGT CACATGACTTTGTTTCTAGCTGAAGATGCTGTTGTGCTTGGCATTGATGTGAGTTTTCCTTTTTCTGTTCTTGACTGTTT TGTTTTTGTGTTGTTTGGTATGTCATTTATTAAGAAAAACATAGAAATGCAATTATGAAGATTTATAACTGATAAGTTCT TAAAATTAGGTGATAGTTGGAGTTGTTTTTTGTTGTGACAAATTACAGTTTCTTATGCTAAATGGCTTGAGCATTATTAT TCTTATGCTTGTGTCTTTGGCTTTATGGAATTATGATATTGATCATGATCTGGGATTAACAAAGAGCACCAATGACTGTG TTATTGGTGATAACAATTGTTTTATTGATACCACTATATTTGATGGCTAGGGCTGCTGTTCAGAGCTTGTAGTTGACTGC ACAACAACTTTTAATTAAGCTTTAGGGCCTAGCTTGCTTTATCTTTTTGAGCAATTTTGTTGTGCCTAGATTGTAACAGA CTTTGATGTTGTCTAAAGTCAAGTTTATGGCCTGATGAATTTCTGGATACCAACCAAATTGCTGTCATATCAGCAGTTTG GCCACATGAGTACCTATATCTTAGAATATGCTTGAAATGATGACTTTAGGAGTATATATACATCTGCATATACATTGTGC ATTTGGCATTGAGTGGGAAATTTCAGGCTTAATATCTGCGTTAAGTTACTAGTAGGTTATGTGTTCTGCTAAATCATCAT TGATATCTTAGGCCATTAATCACTTATATATGTAATTCTATCTATTTCTTTGATAATCTATTGCTTCAACTGCATTTCTC TTCCATTATCTCATAATTGGACATTTTATTTGTCATCTTATGTGATGGCTAACAGGATGAGAAGTATTGGCCACTGATGC CTCCATTGCCTTCATATGGTTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAA GATATTGTCATAACAGGTGAGGATCTTTCATCCTGCTTCTAGTTAGTGGAGGGGTAGCAAACTCTTCCATTCTCAACTAA AATGTCTTTACTTAATATTGAATGTCATTGTAAGCACATTCAATTCGTTATCTTGCAATGAAGCATGATTCGTTTATATT TAGGAAAATGGAGGAATGTCAACAGATTTTTGGAGTCTCAAGAAGGAAATAACATTGTCGAACTTATCTTTATAGTTGAT ATACATATATTTCAAAGGCTTAAGCTAATGGTGAACAGATATTTGAGTACTTTCTTGTTGACCAATATCTCGTTAAACTT TGAAGTATTTGTATTTGTCAGGAACCAACTATTTTAAAAGCTTCAATTATTTTCTGAGAACTTTGAATGATTTTAAATTA TATTTATTACATGCCTCCTCACGCAAGAGTACTTTGGGCTTTAGGCGTGAACATTGCACCTGGGGTGGAAATAGGCTAGG CTAAACCTTGTTTTGTGTAAACATGTCTGAGTTCTGACCTACTTAAAAAGTTTAAGGCCTAAGCATGGCTTATTACGTGT CAGACTTTTTTTTAGGTCTGACCTTGTCTTCTTGAAACATTGTTCTGACCTGATAGCTATTTAATGACTTATTTCATAAT AAGACCTTTACATAGGCCAACACATCTATCTGTAAATATGCCAACAAATTTATCGGCAAACAGGCTAGAATATACTAAAA CAAACATATCTATAAACAAATGATCAGACTTATAGGCTTATAATTTTCACTGGCCCACCTTCCTTGTGATAAAACAACTT TTTATTAGAAGAACGGGGATGGCAAAAATCAAACTCTAGACCACTTCATGGAGTCTGATACTATGCCATAAACCAACTAT TTCAAAAGTATAGGTTGTTGGATGAAGATACATGAATAGTTTTATATTAAATTTTTAAATATACTGATTTTAATCAACAG TGGTTCTACATGTGTTGAGAAACCAGTTGATTTAGCATTTACTAACACTTCCTTCGTGTATTGGTGCACTGCCTCATATT CTACCCCCATACCCTCATTAAAGGGAAAAGGCTTAGCATAGCATAAAGTCTTTCTTTATTCACACATCTCATCATCCACC TAATACTGTGATTGATTAAGCAATCATCTGAAGGGTAGCACAATGCACAAGGAGAAATCCTGACCCGGATTAAATTAGTG CACTAACCACGACTCAAATTCATTCCCCCTTCTATTTAATAGAGTATAGATAGTAATATATTCATACTATGACATCATGT ATCACATGTATCATCATACCATGGGCCTGTATATAAACAGGGCACCATGCTCAGTTGTAACTATCTATTGATGAATAACA GAAACTGTTACACTTTCTCTCTCTTCCTTTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATCTTTAATATA TATATAAAGATATATATATATATATGTATATATCTTTTACTATGTGTCATGCTTAAGCTTAATTTCTAAGTTTCTCTGAT TCCACCTATTGTCATTACTGACAGGGCATAACGGTACCATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAG AAGCGTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCG TGACTCTCCTTTTTGGACACTTCATCCGTATGACTGCAAAAACATTACTATAAAAAATGTTACAATATTGGCTCCTGTAT TTGAAGCTCCTAATACTGATGGCATAGATCCTGGCAAGTATCTTCTACTGAAAACTAAACTTTATTTATATCTTGATGTA TGAATTATGATATATGACTTTCTGATCGGTTCTATCCCAATCTTTGATTTGTTAGTTTTGAGGATAGCTAAACCAACTTG AAAAATGCTCCATGTAAACTAATTTCTTATATGAGTTATATGAATATCAATACCAACTGATTCAGTGGGAGGATGGTTAC TGGGGAAGGAATTTTTTCAGTGATCCTTCTGCACTTATCATCTAAGCTTGTTTGAGGTGTCAATTTTTTGGGACATGTAT CGCCAATTCTGTCGGTGATTAATTTTGGAATTTAGACAGCAGATTTGTGCTATATGTGTAAAATGTTTTTGTCTGTTTAT GTGCCAGCACAATGTACTCCATTTAACCTGGTGTCTGTTATTATTTATCTTGCTTGTGTTTCAATTATCAATCTGAGAGA TGGGCAGTTACCTTGGACTGGAATGTTCATCATCAATATTGGTTTTGTTGTTATATAAAGAGTTCTAATAAACTTGAATT TAATGGTGCGAACAGACTCTTGCGAGGATATGTTGATAGAAGACTGTTACATAAGTGTGGGAGATGATGCAATTGCGATA AAAAGTGGCTGGGATCAGTATGGAATTGCTTATGCAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTCCGTTC TATGGTCAGGTGAATCCCTAACTCAACCAATATATACTTTTCTGCATGCCTTTCAGCATCTTGTATAACTGAAGAGTAAA AAATATAAGTTTGCATAACCGCATAAGTGTCCCCCCATGTATAGTTGGTTTATGTTAGTATAGGAATGGGAATTGCCTTT TCTAGTGTCTGCTCATCTTGTTTTATTCTGAATTTCTATCAGTTAACATTCCTAGTTAACTTCTCTTTGCTAACCAACTC TAGTTAACTTCGATAACTGCACAAATCTTTAGTATCTGTCTCGTCATGCATTAGGGTGTGTCATATCCTGATGATTTTAT TGAATGGAACAGTGCTGGTGTCTCAATAGGCAGTGAGATGTCTGGCGGGGTTTCCAACGTCACGGTGGAGAACCTTTTTG TATGGGATTCCCGGCGTGGTGTAAGGATTAAGACTGCAGCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGAAAC CTAACGTTCGAGAATGTCCGTGTTGGAATTGTTATGAAGACAGATTACAACGAGCACCCTGATGATGGGTATGACCCTAC GGCACTTCCAGAAATCAGAGACATAAGCTTCACCACTGTCCATGGCCATGGAGTTCGTGTGCCGGTGCGTATCCATGGTA GTGAAGCGATTCCGGTGAGAAATGTAACTTTTCGCGACATGTCAGTAGGGTTAACCTACAAGAAGAAGCACATCTTTCAG TGTGCCTTTGTTGAAGGCCAAGTAATAGGGACCATCTTTCCTTCTCCATGTGAGAACCTTGATCGGTACAATGAGCAAGG ACAGCTGGTTAAGCATTCTGCATCCCAGAATGTAACAGATATAGATTATGATTTTTGAGGTGTCATGTTAACTAATTCCT GGTCTCTTGTTCCACGTATTATCGGGGCTCAATTTATGTCTGTTGTATTTGATCAGTTTTGTGGGGTTGGAGCATTCAAT TCATACTTTTTTTTTTTTTGCACCTTTTGTAATTTCACTTCCTTGCTCCATTTTATAGCTTTCTGGAGTGGAGTAGTTGT AAATACGGAAAATTTTCAGATGCTTAGATAAGTTTATTTGATTACACAAATACATAGCCTATGGTGTGAGCATTTTACCT CCATGTGATATCAATATAAAAGGAACTGCATGAGGCAACAACATCGGAAAGATGAAGTAAGAAAATT
CDS sequence (LotjaGi4g1v0322800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTGGAGACCTCAACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCTGGTTTCCGGCATTCTTGAC ATCGCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGGCAGAGGAACATAGTCGGTG GCTTCTTGGTCTTCGGCCGTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTTCAATTTGACGGATTTCGGA GGAGTGGGTGATGGGGTTACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTTCCAAATTGGGGAAGAAAGG TGGGGCCCAGCTCAATGTTCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGTCACATGACTTTGTTTCTAG CTGAAGATGCTGTTGTGCTTGGCATTGATGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGTTATGGG AGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTCATAACAGGGCATAACGG TACCATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTC AGATCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGAC TGCAAAAACATTACTATAAAAAATGTTACAATATTGGCTCCTGTATTTGAAGCTCCTAATACTGATGGCATAGATCCTGA CTCTTGCGAGGATATGTTGATAGAAGACTGTTACATAAGTGTGGGAGATGATGCAATTGCGATAAAAAGTGGCTGGGATC AGTATGGAATTGCTTATGCAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTCCGTTCTATGGTCAGTGCTGGT GTCTCAATAGGCAGTGAGATGTCTGGCGGGGTTTCCAACGTCACGGTGGAGAACCTTTTTGTATGGGATTCCCGGCGTGG TGTAAGGATTAAGACTGCAGCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGAAACCTAACGTTCGAGAATGTCC GTGTTGGAATTGTTATGAAGACAGATTACAACGAGCACCCTGATGATGGGTATGACCCTACGGCACTTCCAGAAATCAGA GACATAAGCTTCACCACTGTCCATGGCCATGGAGTTCGTGTGCCGGTGCGTATCCATGGTAGTGAAGCGATTCCGGTGAG AAATGTAACTTTTCGCGACATGTCAGTAGGGTTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCCTTTGTTGAAGGCC AAGTAATAGGGACCATCTTTCCTTCTCCATGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTGGTTAAGCATTCT GCATCCCAGAATGTAACAGATATAGATTATGATTTTTGA
Protein sequence (LotjaGi4g1v0322800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVETSTLGRFHHQRLDFKRWFPAFLTSHKTLFTVLWIAAFASVFLWQRNIVGGFLVFGRVPARPMPKLRPVAFNLTDFG GVGDGVTLNTEAFERAVSAISKLGKKGGAQLNVPSGRWLTAPFNLTSHMTLFLAEDAVVLGIDDEKYWPLMPPLPSYGYG REHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVISNITLRDSPFWTLHPYD CKNITIKNVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYARPSMNIMIRNLVVRSMVSAG VSIGSEMSGGVSNVTVENLFVWDSRRGVRIKTAAGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYDPTALPEIR DISFTTVHGHGVRVPVRIHGSEAIPVRNVTFRDMSVGLTYKKKHIFQCAFVEGQVIGTIFPSPCENLDRYNEQGQLVKHS ASQNVTDIDYDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 19 | 484 | 466 | 3.2E-287 | – | |
| PANTHER | 19 | 484 | 466 | 3.2E-287 | – | |
| Phobius | 21 | 47 | 27 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 48 | 492 | 445 | - | – | |
| Gene3D | 61 | 456 | 396 | 1.3E-118 | ||
| SUPERFAMILY | 65 | 465 | 401 | 7.19E-110 | ||
| Pfam | 169 | 451 | 283 | 1.8E-50 | ||
| SMART | 241 | 268 | 28 | 170.0 | ||
| SMART | 269 | 290 | 22 | 160.0 | ||
| SMART | 303 | 325 | 23 | 570.0 | ||
| SMART | 331 | 352 | 22 | 640.0 | ||
| SMART | 360 | 381 | 22 | 340.0 | ||
| SMART | 394 | 416 | 23 | 7800.0 | ||
| SMART | 421 | 442 | 22 | 8100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0322800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…