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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0327700 |
| Transcript ID | LotjaGi4g1v0327700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G20510.3 alfin-like 5; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70577557..70580735) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGCTGCTGCAGCGCGCTCTATCCCTCGCACTGTCGAAGAGATTTTCAAGGACTTCATGGGCCGTAGGGCCGCTAT GATCAAGGCTCTCACCACTGGTATCTTCTACCCAACACTCCCACTTTTCTTCCTGTTTTCCCACTTCCAAGTTTTAGGGT TCCTTATCTGTTTTTCATCATACACATTCTGACTAACATTCAACTTTGCTTTTTTCTTATTTGCCAGATGTTCAAGAATT TTACCAGCTCTGCAATCCTGGTTAGGGTTCCTTACATTTTTTTTAAGTCTTTGCTCTCTCATTCTCTATTTTTTGCATGT TTTTTTGAGTCTGTATTTATAATTCATACTAATTTTTCATTTTATTTTCCTTGCATGATTGTGTCATTAATAATTAGTTT CTGCATTTTACTCAAAAATAGTGCGTTTCAAACAAGTGGGATAGTGTAGTGGTTCAGCATTTCGTCCCTTAAGTAACTGG GTGAGAAACTCATTGGCCAACCACCTACAGCTTAGTGCGCTGACAGGCGAGAAATTAGGCCCCGTTTCGAAGAGTTTATT TGAGCTTATCTGATGGCATAAGCATTATGTCAGTGTTTGGCAGAGCTTATGCAAACAACTTATGACCTACCATAAGCTGT TTTGAGCTTATTTTCATAAGCTACTCAGGACAGCTTATGAAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTAT TTCAATAAATTTTATAAAATAGCTTATGAATAAGCGCTTAATTAAGCTGTTTTTCCAAACTGAACCTTAGTCTCACGGTT ACTGACTGGGAATACTTTGGTTAACAATATAAAAAATAGCGTGTTTCGTTAAACTAATTTTTTTTTCCTGGTTGTTATTT GCTATGTTTAGATTATTGTATCATGTTGTAAATGATGGGCAGGGCGGAGGAAATTAACTTGACAATGCATGTGAACTAAA GTGTAATTATGTATTGATGCTTCATTTGTTTAACTTTTGTGTTGTGCTGCAGAGAAGGAAAACCTTTGTCTGTATGGGTT CCCTAATGAGCAATGGGAAGTGAATTTGCCTGCTGAAGAAGTTCCTCCGGAACTTCCGGAGCCTGCACTGGGCATAAACT TTGCTAGGGATGGCATGCAAGACAAGGACTGGCTGTCTTTAGTTGCTGTTCATAGTGATGCCTGGTTACTTTCTGTGGCT TTCTTCTATGGGGCAAGATTTGGTTTTGACAAAGCTACCAGGTGTGGTTTGGTTTTTCTGATTATTTTATTGTGTGGTGC ACAAGCAATCTTTTTCTATGTTGGACGCGAAAACGTTTTGGATGCCTGTCATTTTCTATTTCTTGCGCATGTTTGCAAAT TCTTCTACAATTGATTCTATGTCAAAATCAATTATAGGGAGAAACATCTGTGAGTAGCTTATTGGTTTTAGAATTGCTTC TAAGGAAAGAAAGGTTGATTCAAATATGCTATTAGTTATGGTCTGTTTGTATTACATTTTACTGAGTTGATTTCCTGATA CTATTTCTACAAATGAAAGCATTTTTCCCCTTCCAACAAATGAAATTTGATACGAACACGCTGGTTATGGAAAAACATGA TAATTTATTGTTTACAAGAAATATTGTTTAGGAATGAAGATCAAGGGATTCTTTTTGTTTCACAGCCATATGAATTTCTC TCCTGTGTTTATTGTCTTCTGAGTATCTGTTTGACTTGAGTTATGATTCCTGGATAAGTACATTTTTCATGGAAAAGGTT TTAAGTAAAAACAAAAATTCACAAACTCAGTCTGTCATGGGTGGGTTAGAGTGCCTAATTTTTTGTTATATAAACGGAAA AGCACCCAAGAAAAGCATAAGCAAGGCAATATTCTTTGTCAGTCTTCTTATTCTTCCCTTATGCTGGATCATAATGTATT TTGCTAATGATCAGTTTTAGAAAATAGCACTGTGAGCATACTCAGTAATGTAATTGTAGAAGAAAGGCACCTTTTACAGA ATTTGCATTTGGGATTGTAAGCTTTTCTCTCCATAGATATAAAAGGATTTAACACGTTTCAGCATTTAGTTGTGTCTATA TGATGGAATGTTAGCTTAGCTATAAATTTCCATTTATGTTAAGGTTATTCTGACCTGTGCAACAATGCCTAGGATAAGAT ACAAAATTGAAAAGTTTTTATTGGAAAATAAAGCATTTATTGCACTTTTATATTTCCGATGTAATAAATATTCTCTTTTG CAATATAAATTTCCACTTTTATATCTTTGTGCTACTATGCAATGTTGCATATGTTAGAAGAACTGTTTATATTAAGCCTC CTCGATTTTGGATTGGCTAACAAGTACTTGTAAGTGTCTTGGTCATTGTTTGGCATAGTTATTGGTTCTAGACAGGGATG CTAAACAAGCTGGATGGAATAGAGAACTGATGTATATGATAAATGTCAACAAATCAAAGACAACAAATTGATTGCCGCCT GTGTTTGGTAGATTTATAACTGTGATTTATATCCTGGTTTATGATAATATGCAATTCTCTTTGCAGGAAACGCCTGTACG CTTTAATTAATGATCTACCTACAATATTCGAGGTTGTGACCGAAACTGCAGAGAAACAGGCTAAGGAAAAGTCATCAGTT TCAAACATCGCCAGCAACAATACAAAGACCAGTTCAAAAGCGGTAAGACAATCCCTTATCCTCCACTCTTCCTTGTTTAT CATTTTCTTTTATCCACATGTTTTTTAGGGTCATAATCACATTAGATAATGTTTAAACCCTGGTAAAACATCGGCAGCGA GTCACTTTAATATTCTGTAAACTCCTTATTCTTGGTTTTTACATATAATTGTCATGCTGCTTACTTATTTATTTATTTCC TTCTTAACATGTCACGTCTGCATTATTGTTTCCTTATTGGAACTAAATAGGGAGGCTCTGAATCAGTGAAGTATTTGAAG CAAGTAAAGGACGAGGATGAAGAAGAAGATGATGAGGAGCATGGGGAGACATTGTGTGGCGCTTGTGGGGAGAACTATGC ATCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAACTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCCGGG CAGAACACATTAAGCATTATAAGTGCCCCTCATGCAGCAGTAAGAGAGTTCGGGTTTGA
CDS sequence (LotjaGi4g1v0327700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTGCTGCAGCGCGCTCTATCCCTCGCACTGTCGAAGAGATTTTCAAGGACTTCATGGGCCGTAGGGCCGCTAT GATCAAGGCTCTCACCACTGATGTTCAAGAATTTTACCAGCTCTGCAATCCTGAGAAGGAAAACCTTTGTCTGTATGGGT TCCCTAATGAGCAATGGGAAGTGAATTTGCCTGCTGAAGAAGTTCCTCCGGAACTTCCGGAGCCTGCACTGGGCATAAAC TTTGCTAGGGATGGCATGCAAGACAAGGACTGGCTGTCTTTAGTTGCTGTTCATAGTGATGCCTGGTTACTTTCTGTGGC TTTCTTCTATGGGGCAAGATTTGGTTTTGACAAAGCTACCAGGTGTGGAAACGCCTGTACGCTTTAA
Protein sequence (LotjaGi4g1v0327700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAAAARSIPRTVEEIFKDFMGRRAAMIKALTTDVQEFYQLCNPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGIN FARDGMQDKDWLSLVAVHSDAWLLSVAFFYGARFGFDKATRCGNACTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 121 | 113 | 5.3E-73 | – | |
| PANTHER | 9 | 121 | 113 | 5.3E-73 | – | |
| Pfam | 12 | 121 | 110 | 1.1E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi4g1v0327700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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