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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR021998
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.286s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0359919.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| chr0 189530378 189533856 -
2 domain predictions
2 GO terms
Lj1g3v1787670.1
n.a. PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1| chr1 21245070 21249961 -
2 domain predictions
2 GO terms
Lj1g3v2326720.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| chr1 27560804 27566260 +
2 domain predictions
2 GO terms
Lj3g3v0338960.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Cicer arietinum] gi|502081422|ref|XP_004486862.1| chr3 2700970 2704565 -
2 domain predictions
2 GO terms
Lj3g3v2658830.1
n.a. PHD1 [Glycine max] gi|351727220|ref|NP_001237921.1| chr3 32349721 32353111 +
2 domain predictions
2 GO terms
Lj4g3v0037550.1
n.a. PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1| chr4 354777 357926 -
2 domain predictions
2 GO terms
Lj4g3v0037550.2
n.a. PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1| chr4 355574 357882 -
2 domain predictions
2 GO terms
Lj4g3v0048630.1
n.a. PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1| chr4 390334 393927 -
2 domain predictions
2 GO terms
Lj4g3v2179230.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 5-like [Vitis vinifera] gi|359484453|ref|XP_003633111.1| chr4 30122457 30125960 -
2 domain predictions
2 GO terms
Lj5g3v0455900.1
n.a. PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1| chr5 4420969 4427537 -
2 domain predictions
2 GO terms
Lj6g3v1211460.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 5-like isoform 2 [Cucumis sativus] gi|449452921|ref|XP_004144207.1| chr6 14985386 14985602 +
2 domain predictions
2 GO terms
Lj6g3v1211470.1
n.a. PHD finger protein [Zea mays] gi|195637710|gb|ACG38323.1| chr6 14987928 14989275 +
2 domain predictions
2 GO terms
LotjaGi1g1v0369600.1
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 LjG1.1_chr1 84778256 84783484 -
2 domain predictions
2 GO terms
LotjaGi1g1v0369600.3
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 LjG1.1_chr1 84778775 84783173 -
2 domain predictions
2 GO terms
LotjaGi1g1v0441700.1
n.a. PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|C6T7X8|C6T7X8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0441700 LjG1.1_chr1 93846996 93853034 +
2 domain predictions
2 GO terms
LotjaGi3g1v0029200.1
n.a. PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|I3T930|I3T930_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0029200 LjG1.1_chr3 3200282 3205218 -
2 domain predictions
2 GO terms
LotjaGi3g1v0208200.1
n.a. PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|I3SZL0|I3SZL0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0208200 LjG1.1_chr3 30775476 30781650 -
2 domain predictions
2 GO terms
LotjaGi3g1v0417800.1
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I1MJY1|I1MJY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417800 LjG1.1_chr3 82433668 82437856 +
2 domain predictions
2 GO terms
LotjaGi3g1v0417800.2
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|A0A151T9G0|A0A151T9G0_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0417800 LjG1.1_chr3 82433900 82437269 +
2 domain predictions
2 GO terms
LotjaGi4g1v0002700.1
n.a. PHD finger alfin-like protein; TAIR: AT2G02470.1 alfin-like 6; Swiss-Prot: sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1; TrEMBL-Plants: tr|K7L425|K7L425_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002700 LjG1.1_chr4 590705 594495 -
2 domain predictions
2 GO terms
LotjaGi4g1v0327700.1
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700 LjG1.1_chr4 70577295 70582831 +
2 domain predictions
2 GO terms
LotjaGi4g1v0327700.2
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.3 alfin-like 5; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700 LjG1.1_chr4 70577557 70580735 +
2 domain predictions
2 GO terms
LotjaGi5g1v0047100.1
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100 LjG1.1_chr5 7927249 7934026 +
2 domain predictions
2 GO terms
LotjaGi5g1v0047100.2
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100 LjG1.1_chr5 7927385 7933534 +
2 domain predictions
2 GO terms
LotjaGi5g1v0047100.3
n.a. PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|D7TCI6|D7TCI6_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0047100 LjG1.1_chr5 7927385 7933534 +
2 domain predictions
2 GO terms
LotjaGi6g1v0227400.1
n.a. PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|A0A1J7I2R7|A0A1J7I2R7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0227400 LjG1.1_chr6 53362690 53366855 +
2 domain predictions
2 GO terms