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PF12165

Source: Pfam

Description

Alfin

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0042393
Molecular function Histone binding Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
Subterm of

Associated Lotus transcripts 26

Transcript Name Description Predicted domains Domain count
Lj0g3v0359919.1
– PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1|
Domains
20
Lj1g3v1787670.1
– PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1|
Domains
20
Lj1g3v2326720.1
– PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1|
Domains
20
Lj3g3v0338960.1
– PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Cicer arietinum] gi|502081422|ref|XP_004486862.1|
Domains
17
Lj3g3v2658830.1
– PHD1 [Glycine max] gi|351727220|ref|NP_001237921.1|
Domains
21
Lj4g3v0037550.1
– PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1|
Domains
21
Lj4g3v0037550.2
– PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1|
Domains
8
Lj4g3v0048630.1
– PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1|
Domains
12
Lj4g3v2179230.1
– PREDICTED: PHD finger protein ALFIN-LIKE 5-like [Vitis vinifera] gi|359484453|ref|XP_003633111.1|
Domains
20
Lj5g3v0455900.1
– PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1|
Domains
20
Lj6g3v1211460.1
– PREDICTED: PHD finger protein ALFIN-LIKE 5-like isoform 2 [Cucumis sativus] gi|449452921|ref|XP_004144207.1|
Domains
4
Lj6g3v1211470.1
– PHD finger protein [Zea mays] gi|195637710|gb|ACG38323.1|
Domains
20
LotjaGi1g1v0369600.1
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600
Domains
20
LotjaGi1g1v0369600.3
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600
Domains
20
LotjaGi1g1v0441700.1
– PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|C6T7X8|C6T7X8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0441700
Domains
20
LotjaGi3g1v0029200.1
– PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|I3T930|I3T930_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0029200
Domains
17
LotjaGi3g1v0208200.1
– PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|I3SZL0|I3SZL0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0208200
Domains
20
LotjaGi3g1v0417800.1
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I1MJY1|I1MJY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417800
Domains
20
LotjaGi3g1v0417800.2
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|A0A151T9G0|A0A151T9G0_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0417800
Domains
20
LotjaGi4g1v0002700.1
– PHD finger alfin-like protein; TAIR: AT2G02470.1 alfin-like 6; Swiss-Prot: sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1; TrEMBL-Plants: tr|K7L425|K7L425_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002700
Domains
20
LotjaGi4g1v0327700.1
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700
Domains
21
LotjaGi4g1v0327700.2
– PHD finger alfin-like protein; TAIR: AT5G20510.3 alfin-like 5; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700
Domains
4
LotjaGi5g1v0047100.1
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100
Domains
20
LotjaGi5g1v0047100.2
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100
Domains
20
LotjaGi5g1v0047100.3
– PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|D7TCI6|D7TCI6_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0047100
Domains
20
LotjaGi6g1v0227400.1
– PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|A0A1J7I2R7|A0A1J7I2R7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0227400
Domains
21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 3.85