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IPR021998 is a Alfin, N-terminal.
<p>This entry represents the N-terminal domain found in Alfin family members.</p> <p>The Alfin family includes PHD finger protein Alfin1 and Alfin1-like proteins. They contain a conserved N domain at the N terminus, a PHD finger domain with conserved C4HC3 residues at the C terminus and a variable V region between the two conserved domains [[cite:PUB00098042]]. Alfin1 is a histone-binding component that specifically recognises H3 tails trimethylated on 'Lys-4' (H3K4me3), which marks transcription start sites of virtually all active genes [[cite:PUB00066381], [cite:PUB00066382]]. Alfin1-like proteins have been shown to play roles in root growth and abiotic stress response [[cite:PUB00098042]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| | 20 | ||
– | PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1| | 20 | ||
– | PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| | 20 | ||
– | PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Cicer arietinum] gi|502081422|ref|XP_004486862.1| | 17 | ||
– | PHD1 [Glycine max] gi|351727220|ref|NP_001237921.1| | 21 | ||
– | PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1| | 21 | ||
– | PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1| | 8 | ||
– | PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1| | 12 | ||
– | PREDICTED: PHD finger protein ALFIN-LIKE 5-like [Vitis vinifera] gi|359484453|ref|XP_003633111.1| | 20 | ||
– | PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1| | 20 | ||
– | PREDICTED: PHD finger protein ALFIN-LIKE 5-like isoform 2 [Cucumis sativus] gi|449452921|ref|XP_004144207.1| | 4 | ||
– | PHD finger protein [Zea mays] gi|195637710|gb|ACG38323.1| | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|C6T7X8|C6T7X8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0441700 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|I3T930|I3T930_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0029200 | 17 | ||
– | PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|I3SZL0|I3SZL0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0208200 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I1MJY1|I1MJY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417800 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|A0A151T9G0|A0A151T9G0_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0417800 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT2G02470.1 alfin-like 6; Swiss-Prot: sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1; TrEMBL-Plants: tr|K7L425|K7L425_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002700 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700 | 21 | ||
– | PHD finger alfin-like protein; TAIR: AT5G20510.3 alfin-like 5; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700 | 4 | ||
– | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|D7TCI6|D7TCI6_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0047100 | 20 | ||
– | PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|A0A1J7I2R7|A0A1J7I2R7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0227400 | 21 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 3.85 |