Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0336200 |
Transcript ID | LotjaGi4g1v0336200.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor; TAIR: AT5G49330.1 myb domain protein 111; Swiss-Prot: sp|Q9FJ07|MY111_ARATH Transcription factor MYB111; TrEMBL-Plants: tr|K7L3L1|K7L3L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0336200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71651730..71653758) extracted from Lotus japonicus Gifu genome v1.2.
ACTATCTCTGTGTTATTGTGTGTGTGAGAGAGAAAAAGAGTGTGTCCCAATCAAAGTCAATTAAGACAAAAATATCAATG GGGAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGATTA CATCCAACAAAATGGTGAGGGATCATGGAGATCCTTGCCCAAGAATGCAGGTACATACTTACATGCATATCCAATTCCAA TATTTCATAAGCATATAAGTGGAAATCGCGGACAGAAAATCCTTGCATTCACGCAGTTACACAATCTGAGTTGTTTGATC AAGATTGTTCAGCTCACATTTTAAATTTATATTTATGGTCAGATCTGGATGAAATATATGAGCCTACCAATCTTCACCGA ATGACTCGGATTGCGTAACTGCGTGAATGCAGGGGATATACTAGAGTGTATATATGATTAATGATTTTCATTAGGTGTTT GTCTTATAATAGTATGTTTGAATGAGACTCAAATCAATTTCTGAAACCCGCTTCTCTTGAGAATTGATTTTGTATTTAGA CATAGTTCATCTTTGAATCAACTTCTTTTTTCTTAAAATCAATTTTGACACCTAGAAACTATGCATATAAGTTTCTCTCG ATAGTTGATTTTAACTTTAGAGTCGATTTTGTAGAAAAATTTCAAACATGCATTCAATTGCACAAAGATTTCGAAAGATG GACTTAATTGGTTGGAACTATGAATGTATGTACATGTGAAGGTTTACTAAGATGCGGGAAGAGTTGCAGACTAAGATGGA TCAACTACTTGAGATCAGATGTGAAGAGAGGCAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTATT CTTGGTAACAGGTGTGGCTCTTCCTTCCCAAAATAAACACCATTTGATTATATTTTGTATGTATAGTATATGTGGCTCTT CCTTATATATTTTTTATTTTATTTTTTGGTTATTGTTTCTGTTCAAAACATGGAATTGATTGATCTTCGCACATTCAATT AATTGATACTCGGTTAAACATGGGGTTCCAGTGGTGGTTTGATTGAAAAAACTAGTAGACAGAAAGGTTTCCATATTTAT ATGGCTTCTCTTCTGATTTCCACTTTCAGCTATACATTGTATACTTATGCAGCAAAATTTATAACAGTAATGATACTTCC CTGGTGAATTGTTTAAACTAAATTTCCCTTTTGTGGTAGGTGGTCTGTAATAGCAGGACATCTACCAGGGCGCACGGACA ATGAGATAAAAAACTATTGGAATTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAAGCAGTTAAATGAGTCTCTACCT CCCATTGACTTAGCTGCTATAAACGTTGCTGCTTCTTCCAAGAGAAGATCATCAGGTCGAGGTGCAAATCAGCAAGCACC TAAGCAAGAGGACAATAAGAAAATTCAAGAAGGGAACAATGATCTTCAAGCTCAATCAAAAAGAGAACCAACTTCACAAA GTTATAATGATAATAACAACAGTGTTGGAGATCATGAAATGCAAGGTTATAATTCATTCAACTCAAATAATGGTACAATT GCCTCATGCCCCAATATGGAAGAAATTGGGGACTTAGGACCATATGAGTGGCTAGATGATGAAATCATGAGACTTAGTTA CATGTTTGAAAGTGGGGTTCTTGTAAACCCAGATGGCAATATAACCAGTAACGAAGATCAAGTTGGACTAGTTGGTGAAG AAATAATGCAAGGGAGGAATAATGAGGAGAGCAATTTCAGTGGAGAGTGGAACAACACTACTAGCTGTTCTTCAGTGAAC TCTGTTTATGATTATCAGTGGCCTGATATGCTATTAGAAGGTAGTAGTGTTCAATCTCATAATCAATGGGAACTTTGTGA AGAAGACCAGAACATGAATTGCTTGTGGGGTAGCAGCAGCAACTGTGAAATGAATGGCTTTTATCAGTGATCTGAAAATC ATTTCAATTGTAAGAGTTGAAGTTTCACC
CDS sequence (LotjaGi4g1v0336200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGA TTACATCCAACAAAATGGTGAGGGATCATGGAGATCCTTGCCCAAGAATGCAGGTTTACTAAGATGCGGGAAGAGTTGCA GACTAAGATGGATCAACTACTTGAGATCAGATGTGAAGAGAGGCAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAG TTGCATGCTATTCTTGGTAACAGGTGGTCTGTAATAGCAGGACATCTACCAGGGCGCACGGACAATGAGATAAAAAACTA TTGGAATTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAAGCAGTTAAATGAGTCTCTACCTCCCATTGACTTAGCTG CTATAAACGTTGCTGCTTCTTCCAAGAGAAGATCATCAGGTCGAGGTGCAAATCAGCAAGCACCTAAGCAAGAGGACAAT AAGAAAATTCAAGAAGGGAACAATGATCTTCAAGCTCAATCAAAAAGAGAACCAACTTCACAAAGTTATAATGATAATAA CAACAGTGTTGGAGATCATGAAATGCAAGGTTATAATTCATTCAACTCAAATAATGGTACAATTGCCTCATGCCCCAATA TGGAAGAAATTGGGGACTTAGGACCATATGAGTGGCTAGATGATGAAATCATGAGACTTAGTTACATGTTTGAAAGTGGG GTTCTTGTAAACCCAGATGGCAATATAACCAGTAACGAAGATCAAGTTGGACTAGTTGGTGAAGAAATAATGCAAGGGAG GAATAATGAGGAGAGCAATTTCAGTGGAGAGTGGAACAACACTACTAGCTGTTCTTCAGTGAACTCTGTTTATGATTATC AGTGGCCTGATATGCTATTAGAAGGTAGTAGTGTTCAATCTCATAATCAATGGGAACTTTGTGAAGAAGACCAGAACATG AATTGCTTGTGGGGTAGCAGCAGCAACTGTGAAATGAATGGCTTTTATCAGTGA
Protein sequence (LotjaGi4g1v0336200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCEKVGLKKGRWTAEEDKILTDYIQQNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVK LHAILGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKQLNESLPPIDLAAINVAASSKRRSSGRGANQQAPKQEDN KKIQEGNNDLQAQSKREPTSQSYNDNNNSVGDHEMQGYNSFNSNNGTIASCPNMEEIGDLGPYEWLDDEIMRLSYMFESG VLVNPDGNITSNEDQVGLVGEEIMQGRNNEESNFSGEWNNTTSCSSVNSVYDYQWPDMLLEGSSVQSHNQWELCEEDQNM NCLWGSSSNCEMNGFYQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 328 | 325 | 1.2E-121 | – | |
PANTHER | 4 | 328 | 325 | 1.2E-121 | ||
ProSiteProfiles | 9 | 61 | 53 | 15.486 | ||
SUPERFAMILY | 11 | 108 | 98 | 1.55E-28 | ||
Gene3D | 11 | 67 | 57 | 6.3E-17 | – | |
SMART | 13 | 63 | 51 | 3.3E-12 | ||
Pfam | 14 | 61 | 48 | 4.3E-13 | ||
CDD | 16 | 61 | 46 | 1.33587E-9 | ||
ProSiteProfiles | 62 | 116 | 55 | 25.69 | ||
SMART | 66 | 114 | 49 | 1.1E-16 | ||
Pfam | 67 | 112 | 46 | 5.1E-14 | ||
CDD | 71 | 112 | 42 | 1.35586E-11 | ||
Gene3D | 71 | 116 | 46 | 1.5E-19 | – | |
MobiDBLite | 141 | 157 | 17 | - | – | |
MobiDBLite | 141 | 203 | 63 | - | – | |
MobiDBLite | 166 | 203 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0336200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…