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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0336200 |
| Transcript ID | LotjaGi4g1v0336200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G49330.1 myb domain protein 111; Swiss-Prot: sp|Q9FJ07|MY111_ARATH Transcription factor MYB111; TrEMBL-Plants: tr|K7L3L1|K7L3L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0336200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71651730..71653758) extracted from Lotus japonicus Gifu genome v1.2.
ACTATCTCTGTGTTATTGTGTGTGTGAGAGAGAAAAAGAGTGTGTCCCAATCAAAGTCAATTAAGACAAAAATATCAATG GGGAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGATTA CATCCAACAAAATGGTGAGGGATCATGGAGATCCTTGCCCAAGAATGCAGGTACATACTTACATGCATATCCAATTCCAA TATTTCATAAGCATATAAGTGGAAATCGCGGACAGAAAATCCTTGCATTCACGCAGTTACACAATCTGAGTTGTTTGATC AAGATTGTTCAGCTCACATTTTAAATTTATATTTATGGTCAGATCTGGATGAAATATATGAGCCTACCAATCTTCACCGA ATGACTCGGATTGCGTAACTGCGTGAATGCAGGGGATATACTAGAGTGTATATATGATTAATGATTTTCATTAGGTGTTT GTCTTATAATAGTATGTTTGAATGAGACTCAAATCAATTTCTGAAACCCGCTTCTCTTGAGAATTGATTTTGTATTTAGA CATAGTTCATCTTTGAATCAACTTCTTTTTTCTTAAAATCAATTTTGACACCTAGAAACTATGCATATAAGTTTCTCTCG ATAGTTGATTTTAACTTTAGAGTCGATTTTGTAGAAAAATTTCAAACATGCATTCAATTGCACAAAGATTTCGAAAGATG GACTTAATTGGTTGGAACTATGAATGTATGTACATGTGAAGGTTTACTAAGATGCGGGAAGAGTTGCAGACTAAGATGGA TCAACTACTTGAGATCAGATGTGAAGAGAGGCAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTATT CTTGGTAACAGGTGTGGCTCTTCCTTCCCAAAATAAACACCATTTGATTATATTTTGTATGTATAGTATATGTGGCTCTT CCTTATATATTTTTTATTTTATTTTTTGGTTATTGTTTCTGTTCAAAACATGGAATTGATTGATCTTCGCACATTCAATT AATTGATACTCGGTTAAACATGGGGTTCCAGTGGTGGTTTGATTGAAAAAACTAGTAGACAGAAAGGTTTCCATATTTAT ATGGCTTCTCTTCTGATTTCCACTTTCAGCTATACATTGTATACTTATGCAGCAAAATTTATAACAGTAATGATACTTCC CTGGTGAATTGTTTAAACTAAATTTCCCTTTTGTGGTAGGTGGTCTGTAATAGCAGGACATCTACCAGGGCGCACGGACA ATGAGATAAAAAACTATTGGAATTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAAGCAGTTAAATGAGTCTCTACCT CCCATTGACTTAGCTGCTATAAACGTTGCTGCTTCTTCCAAGAGAAGATCATCAGGTCGAGGTGCAAATCAGCAAGCACC TAAGCAAGAGGACAATAAGAAAATTCAAGAAGGGAACAATGATCTTCAAGCTCAATCAAAAAGAGAACCAACTTCACAAA GTTATAATGATAATAACAACAGTGTTGGAGATCATGAAATGCAAGGTTATAATTCATTCAACTCAAATAATGGTACAATT GCCTCATGCCCCAATATGGAAGAAATTGGGGACTTAGGACCATATGAGTGGCTAGATGATGAAATCATGAGACTTAGTTA CATGTTTGAAAGTGGGGTTCTTGTAAACCCAGATGGCAATATAACCAGTAACGAAGATCAAGTTGGACTAGTTGGTGAAG AAATAATGCAAGGGAGGAATAATGAGGAGAGCAATTTCAGTGGAGAGTGGAACAACACTACTAGCTGTTCTTCAGTGAAC TCTGTTTATGATTATCAGTGGCCTGATATGCTATTAGAAGGTAGTAGTGTTCAATCTCATAATCAATGGGAACTTTGTGA AGAAGACCAGAACATGAATTGCTTGTGGGGTAGCAGCAGCAACTGTGAAATGAATGGCTTTTATCAGTGATCTGAAAATC ATTTCAATTGTAAGAGTTGAAGTTTCACC
CDS sequence (LotjaGi4g1v0336200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGA TTACATCCAACAAAATGGTGAGGGATCATGGAGATCCTTGCCCAAGAATGCAGGTTTACTAAGATGCGGGAAGAGTTGCA GACTAAGATGGATCAACTACTTGAGATCAGATGTGAAGAGAGGCAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAG TTGCATGCTATTCTTGGTAACAGGTGGTCTGTAATAGCAGGACATCTACCAGGGCGCACGGACAATGAGATAAAAAACTA TTGGAATTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAAGCAGTTAAATGAGTCTCTACCTCCCATTGACTTAGCTG CTATAAACGTTGCTGCTTCTTCCAAGAGAAGATCATCAGGTCGAGGTGCAAATCAGCAAGCACCTAAGCAAGAGGACAAT AAGAAAATTCAAGAAGGGAACAATGATCTTCAAGCTCAATCAAAAAGAGAACCAACTTCACAAAGTTATAATGATAATAA CAACAGTGTTGGAGATCATGAAATGCAAGGTTATAATTCATTCAACTCAAATAATGGTACAATTGCCTCATGCCCCAATA TGGAAGAAATTGGGGACTTAGGACCATATGAGTGGCTAGATGATGAAATCATGAGACTTAGTTACATGTTTGAAAGTGGG GTTCTTGTAAACCCAGATGGCAATATAACCAGTAACGAAGATCAAGTTGGACTAGTTGGTGAAGAAATAATGCAAGGGAG GAATAATGAGGAGAGCAATTTCAGTGGAGAGTGGAACAACACTACTAGCTGTTCTTCAGTGAACTCTGTTTATGATTATC AGTGGCCTGATATGCTATTAGAAGGTAGTAGTGTTCAATCTCATAATCAATGGGAACTTTGTGAAGAAGACCAGAACATG AATTGCTTGTGGGGTAGCAGCAGCAACTGTGAAATGAATGGCTTTTATCAGTGA
Protein sequence (LotjaGi4g1v0336200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCEKVGLKKGRWTAEEDKILTDYIQQNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVK LHAILGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKQLNESLPPIDLAAINVAASSKRRSSGRGANQQAPKQEDN KKIQEGNNDLQAQSKREPTSQSYNDNNNSVGDHEMQGYNSFNSNNGTIASCPNMEEIGDLGPYEWLDDEIMRLSYMFESG VLVNPDGNITSNEDQVGLVGEEIMQGRNNEESNFSGEWNNTTSCSSVNSVYDYQWPDMLLEGSSVQSHNQWELCEEDQNM NCLWGSSSNCEMNGFYQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 328 | 325 | 1.2E-121 | – | |
| PANTHER | 4 | 328 | 325 | 1.2E-121 | ||
| ProSiteProfiles | 9 | 61 | 53 | 15.486 | ||
| SUPERFAMILY | 11 | 108 | 98 | 1.55E-28 | ||
| Gene3D | 11 | 67 | 57 | 6.3E-17 | – | |
| SMART | 13 | 63 | 51 | 3.3E-12 | ||
| Pfam | 14 | 61 | 48 | 4.3E-13 | ||
| CDD | 16 | 61 | 46 | 1.33587E-9 | ||
| ProSiteProfiles | 62 | 116 | 55 | 25.69 | ||
| SMART | 66 | 114 | 49 | 1.1E-16 | ||
| Pfam | 67 | 112 | 46 | 5.1E-14 | ||
| CDD | 71 | 112 | 42 | 1.35586E-11 | ||
| Gene3D | 71 | 116 | 46 | 1.5E-19 | – | |
| MobiDBLite | 141 | 157 | 17 | - | – | |
| MobiDBLite | 141 | 203 | 63 | - | – | |
| MobiDBLite | 166 | 203 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0336200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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