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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0345700 |
| Transcript ID | LotjaGi4g1v0345700.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA/RNA helicase protein; TAIR: AT3G06400.2 chromatin-remodeling protein 11; Swiss-Prot: sp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr|A0A1J7I094|A0A1J7I094_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72529403..72536476) extracted from Lotus japonicus Gifu genome v1.2.
TCCGAAGAGGAAGAGGAGGAGCAGCAAGAAGAGGAGGTTCACGACCAGATCGAAGAGGACGACGAGGAACTCGAAGCCGT GGCTCGCTCCGCTAGCTCCGACGACGAGCCGGATGAATCCGGCGGCGAAGATGCTGTTGCTGCTGATGACGATAATCAGG TTAACCTGAACTTGCATTTTCATATCTTTGTTTGCGCTTGCCGTTTCACGTGATGATTTTCAGTTCGTTATAGTTTGGAT TTGCTTAGATGTTAGGTTTGTTGTTATTGTAGGATGATGAAGGTAATGCTGCTGATCCTGAAATTAGCAAACGCGAGAAG GCTAGGCTAAAGGAATTGCAGCAATTGAAGAAGCAGAAGATTCAGGAGATACTGGATGCACAAAATGCAGCCATTGATGC TGATATGGTGCGTGTGTTAGTGTTATTGTTCACTTTACATTTTTTGGCGTAGCGGCAAGCCCAAAAAACGCTATTTCGAG CGCTATAACCGACAATAGTGGTGAATAGTGGAGTAGTGGTGAAACCCCAGGGCACTATGCTATAGCGCTATTGCGCCGCT ATGACACGCTATTAACAAGCCTGGTTTATATTATGTTAATTTGATGTTTGACTGAGGAATGGTTGAATTTTCTGCAGAAC AATAGAGGAAAGGGTAGGTTGAACTATCTCTTGCAGCAGACTGAGTTGTTTGCTCATTTTGCCAAAGCTGATCAATCTTC ATCTCAAAAGAAGGGAAAGGGAAGGTACATTCTGAAATTTCATGAATACTCTTTGGTCTGTGCTATGGCCATTCCTTTTG CTGGCTTTATCTTATTGAGTTTTAACTTTTAAATATATTGAAAATCATACGTTCATGTCTATTTTAGGGGACGCCATGCA TCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTGAAGGAAGAAGAAGGTGGTTCAGCAAACACACGGCTGATGAC TCAACCTTCATGTAAACTATTCTATTTCCTTTATCAGTTTTATGCACAGGCTTATTTTCCTTTCTCACGTTTCCTTTACT TGTGAAAAAGATAACGGGATGGCTTATTTTCTGCCATAGTACTGGTTAAGGATGCATTGGTATTTAAACTGTTCATTTTG TTTTTCCTGGTGCTGAAGGCTTGCATTCTGATTGCTGGATTTCTCATACGGGCTACATGTGCTCTAGGTTTAATATATAT TGGATTTTTTCTTATTAGTGTTATTTGGATTCTTGTTTGTTGCCTACAACTATCTGGCTGATATATGATGGGTTGTTCTT GAGTTTTATGTTAATCGTGTCTAATATTTTCAAGATTTTTGTTTGTACGAATGTGAATTTGCTTGCTTGTTCGACAGGTA TCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATCAGATTGTATGAGAATGGAATAAATGGGATT CTGGCAGATGAAATGGTAGGTTGTAGATGGTGTCTCGGATATAATTCACACTTACATAATACATGCACATTACTACCAGT GATGTGCAATTTGATTAAGTATGAGTTGATTAATAAAAGTTCTGATGAATGAATATATTGTTGATTTGCAGGGGCTTGGT AAAACTTTGCAAACTATATCTTTGCTGGCCTATTTACATGAGTTCAAAGGAATAACAGGCCCTCATATGGTGGTTGCTCC AAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTCTGTCCTGTTATACGTGCAATAAAGTTCCTTGGTAACC CTGATGAGAGGGTAAGATTTGCTCGGCCGGACTGGCTTATTTTGGGGTTACAACTTACAATGAATCTAGGCTTTGACATC CTTGTCTAATGGTTTTAATTTCAAATATTTAGAGGCATATAAGGGAGGAGCTATTGGTTGCTGGAAAGTTTGATGTGTGC GTGACAAGCTTTGAAATGGTAATCAAGGAGAAGTCTGCGTTTCGTCGATTTAACTGGCGTTACATAATTATTGATGAAGC TCACAGAATCAAGAATGAGAATTCCCTCCTGTCCAAAACAATGAGGCTATACAATACAAACTATCGGCTCCTTATAACAG GCACACCACTACAGGTATATCATAATATTTAATAATTTATCATACACAAGATGGTATCATCTTAAGAAATGGTATCTCTT CTTAACATGGAAACCCACATTCCATCTAATTGAAGTTAGTATGATCTCATAATTTCATGAGTATAAAGCTGATAATTTAT CTTGTGGAAGAGACTTTTCTTCATGTTTCTAATGGAGGGTGGCTGTGTCAGTTAATTTCTAAATCCACCTGTTTTATATG CTCAGCACCCTACAATTTTTGTTTTGTTTTCCTATTTTTTAACTTCACATCCTTATTAAATTCTCTCATTTTTTGTGAAG ATGGGACATTAAGCAAGAATATGCTAGAAATAATTACTTCTTCTCCGTGGGCACCTTTAGTATGTAATCTCTAAGTAAAT TTTCATCAAAGACGAGGTTGTACACCAGTTGTTATTGAGAATTTCTAAGTAGTCAAATTGTGGTTGATTAGATGGAGAGG TGAATTGAATGCTTATAAGTTTGGTTAATTGGGTAGTACTTTTATTGCTCTTTGTGTCTTTTGCCTATAGTCCCTTCAGC CTCAGTTTAAATTTTTGTGTTATATGCTTAGAGGTCAGGTTTATTTTGGAATCTGGATCTTAATTCCCATTCTTTGGTTG CACTCATAGTAATATCTTAATACACTTGAGTAATTAATGTGATTTGTTATCTTTAATGTTGCAGAACAATCTTCATGAAC TCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGT GAAAATGACCAACAGGAAGTTGTCCAACAACTACACAAAGTAAGCTTCACACTATCTTTGGTTGTTGAGTCTGTTATAAA CTTATGATATTATGACGATTATATAATGTTATTTTTTGGTATAATTAAGGTCCTCCGTCCATTTCTCCTTCGAAGATTGA AATCTGATGTCGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTTAAAGTAGGTATGTCACAAATGCAGAAACAGTAT TATAGGGCCTTGCTGCAGAAGGATCTTGAGGTTGTAAATGCCGGTGGAGAACGGAAGCGTCTCTTAAATATAGCGATGCA ACTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGACCATCTGG TTACAAATGCTGGTAATTTTTTTTATAATTAGAGATGCGTCAGAAGTCCTTTTTAGACTGATCAATACAATAAGATCTTA AATTTGTTTCTTTTTCTAAAAATATCTTCTGCAGGTAAAATGGTTCTACTGGATAAATTACTTCCTAAACTAAAAGAACG GGATTCTAGGGTACTTATATTTTCACAGGTCAGTTCTATGTAAGAATTAGATTCTTTTCAGATGGCTGTTAATAGCTTAT TTTTTCCTGTTGTATTTGTTTCAATTCTTGCTTAATATATATCTCTTCTTCTTCAGATGACTAGGCTGTTGGACATACTT GAAGATTATTTAATGTTTCGAGGATACAAATATTGCCGCATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCAT TGAGGCTTTCAACAAACCAGGAAGCGAGAAATTTGTCTTCTTGCTATCTACTCGGGCTGGTGGTCTTGGCATAAATCTTG CTACTGCTGATATTGTCATTCTTTATGATAGTGACTGGTGAGTATTTCAATCATGTCAGCACCCTTCTGATTTAGATTGG TGCCTTATGTTCACAACTAATTGTTTGTTGATAATTGGTGGTGTTAAAACAGGAACCCACAGGTTGACCTGCAAGCTCAG GATCGGGCTCATAGGATTGGTCAGAAGAAAGAAGTTCAAGTTTTCAGATTCTGCTCAGAGGTTTGTGATTTTATACTTTA TTTTGCTCACTATTGGGTATATTTTTCTAATATTATATTTCTATCTAGAAGTATGGATACTAGCATTGTACATAAAATAA TATAATTGAAATATCCAAGCTAGAAGTATTTAAGGTATCCAACAAGCTGTGTTTGACAACCATTTTAAAGTGTTGGTGCC TCCTACTTCCTGTTTCCATTTGTGTCAATATCTCATCTCATATCATGGTAATTGCACAGTTTACTATTGAGGAAAAAGTC ATTGAAAGGGCTTACAAAAAGCTCGCACTTGATGCTCTGGTGATTCAGCAAGGGCGTTTAGCTGAGCAGAAGAGTAAGAA TTTTAAGGATTATTTTTCTTCTTTGTTTGCGAGACTTGTTTATTGTATAATAAGTGGGACAATTTGTTTATGGATGCAGC TGTAAATAAGGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATCACTG ATGAGGACATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAA GATGCTATCAAATTCAAGATGGATGACCGTATGTAACTTTGAATATTAATTCTGGGTTTTGCAAATTATAGCTTTGATTG ATGTCATTAAATGTCGTGTTGTTTAACTTCCTGTATACCCTTAAGTTTTTTTTTCCCGCTCTGCACCTATTCTTTTGATT TAAAAAATTGAAAATAAATGCTTTGTACCCGAGTGGAGGTGCCATGTTGGGTTTTCATTGCGATTCATCCTTCTGAAACC TTATCCTTATGATTTAAGAGTAAACTACACATGCTATACTCTTATTCGCACATTAATTTTGGTTTGGAGATAAATGAGAC CTCCAAGTATTTTCTTGCTACTCTTTATGTTTAGTGAAGCTTCTTTGTTATTGTAACATGTTACATGCACACAACCACAA GTTTTAGCTCTAGCTTGGCTATTCAATATTTGCTTTTTACTTATATGCAAGTTCGAGAGTTACTAATATAAATATTTTAA ATTTGTAGCTGCTGAATTGTATAATTTTGATGATAAGGAGGTAAGTTGACATTTTGATTTTGCTTACTATGATGGACTCA GTTCTTAATGCTCATTGTTGCATCAACTCCCCCCTCTTGCTTTTTAACCAACATATTGTATGCACTTTTTTCTTTAAATG TAGGATGAGAACAAATTTGATATAAAAAAGATTGTGACTGAAAACTGGGTCGAACCATCAAGAAGAGAACGGAAGCGCAA GTAACATATTCCTTCATAGTTTACATTGAATTATTGACCTTTATCTTTTTTATATGACCTATAATTCTTTTTTGTTGGGT GGTGGCTTGTGGCTCTAGTTACTCAGAATCTGAATACTTCAAGCAAACTATGCGTCAAGGTGGTCCTACTAAACCAAAAG AGCCTCGTATTCCAAGGATGCCTCAATTGTAAGTTTTTCATTAAAAAATGCTTTTTTTCTTAGAAAAATATGATGCTTCT ATTTTGACTGACAGTTATAAATTTCTGTTACATTCAGGCATGATTTCCAGTTTTTCAACACACACAGGCTGAATGAGCTG TATGAAAAGGAAGTTCGCCGTCTAATGGTGGGTAACATAAACATGCTGATTCATATTTATCAGGTTTAGCTCGGAAAATG TGTATATACATTGGTGCTTACATTTTTACTGAAATTTCAGCAAGCACATCAGAAGAGTCAGGTGAAGGACTCCATAGATG TTGATGAACCAGAAGGTACACACTAGCAAACTGTAGTCTTTTATCTTCTGCTTTGTATAGAAATGTATAATTGATTTAAT TCAATAATGACATATCATACACATTGGATGTTTAGAAATTGGAGATTCACTGACTGTTGAAGAGGTGGAAGAAAAGGAGC GCCTGCTAGAGGAGGTGAGCAAATTTCTTTATAAAATAGGCTTTTTGATATTAGTGTTTTTTTAATCATGGTATTTGAAC GCAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCATGTGAAAAGTATGGCCGAAATGACATAC AAAGTATTGCTTCTGAGATTGAAGGAAAAACAGAAGAGGAAGTTGAAAGATATGCGAAAGTCTTCAAAGAAAGATACAAG GAATTAAATGGTGAGTTACAATGATCAATATAAGAACCTTCGGTAGTAAGTCTTCAAAGTAGGAATGCAATACACTGTAG TATTTTAAATAAAATCAGTTTGCTTGTGTAATATAGCCACCACATTACAGTGCATTATATCGGTTCTTTTGTGTGTTGAT AATGCTAACTGTAGCTTGAAATCAGTGTTTCATCAGAATAGTAATGATCTTCTGATTTTATGTTTTTTGACTTGTTATTT GTAGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGACAAGAATATCTCGGAAAGATGAGATCATGAAAGCTAT TGGGAAAAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACA ATGAAGAATGTGACCGATTCATGGTGGGCTTTTATTTTTCTCTATTTTTTGCCCAGTTTCTTATTTTGTCTTTTGATTTT CAATCGTAAAGTTATAATGACTGTCACAAAATTTGCAGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAA TTGAAATCGGCGTTTCGAATGTCGCCCTTGTTTAAGTTTGATTGGTTTGTGAAGTCTCGCACGACGCAGGAACTGACAAG GAGGTGCGACACCCTCATTCGGCTGATAGAGAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAAA AGAAACTCGCCGCGAAGGTTTGTATCCCCCTATTAAACCTTTTTTCTTCTGAGTTTCTTGTTTTTAATTGATAACAACTG TTGTTTTACTCAACTTGGACATACTTTTCAGAATTCAACCCCATCAAAGCGTGCAGTGCCAAGACAGGCGGAGAGTCCAT CTCTGAAGAAACGGAAGCAGTTAACTATGGATGA
CDS sequence (LotjaGi4g1v0345700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAATAGAGGAAAGGGTAGGTTGAACTATCTCTTGCAGCAGACTGAGTTGTTTGCTCATTTTGCCAAAGCTGATCA ATCTTCATCTCAAAAGAAGGGAAAGGGAAGGGGACGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACC TGAAGGAAGAAGAAGGTGGTTCAGCAAACACACGGCTGATGACTCAACCTTCATGTATCCAAGGGAAGATGAGGGATTAC CAACTTGCTGGGCTAAACTGGCTCATCAGATTGTATGAGAATGGAATAAATGGGATTCTGGCAGATGAAATGGGGCTTGG TAAAACTTTGCAAACTATATCTTTGCTGGCCTATTTACATGAGTTCAAAGGAATAACAGGCCCTCATATGGTGGTTGCTC CAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTCTGTCCTGTTATACGTGCAATAAAGTTCCTTGGTAAC CCTGATGAGAGGAGGCATATAAGGGAGGAGCTATTGGTTGCTGGAAAGTTTGATGTGTGCGTGACAAGCTTTGAAATGGT AATCAAGGAGAAGTCTGCGTTTCGTCGATTTAACTGGCGTTACATAATTATTGATGAAGCTCACAGAATCAAGAATGAGA ATTCCCTCCTGTCCAAAACAATGAGGCTATACAATACAAACTATCGGCTCCTTATAACAGGCACACCACTACAGAACAAT CTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCA AATCTCTGGTGAAAATGACCAACAGGAAGTTGTCCAACAACTACACAAAGTCCTCCGTCCATTTCTCCTTCGAAGATTGA AATCTGATGTCGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTTAAAGTAGGTATGTCACAAATGCAGAAACAGTAT TATAGGGCCTTGCTGCAGAAGGATCTTGAGGTTGTAAATGCCGGTGGAGAACGGAAGCGTCTCTTAAATATAGCGATGCA ACTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGACCATCTGG TTACAAATGCTGGTAAAATGGTTCTACTGGATAAATTACTTCCTAAACTAAAAGAACGGGATTCTAGGGTACTTATATTT TCACAGATGACTAGGCTGTTGGACATACTTGAAGATTATTTAATGTTTCGAGGATACAAATATTGCCGCATAGATGGCAA TACTGGTGGAGAAGATCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGCGAGAAATTTGTCTTCTTGCTATCTA CTCGGGCTGGTGGTCTTGGCATAAATCTTGCTACTGCTGATATTGTCATTCTTTATGATAGTGACTGGAACCCACAGGTT GACCTGCAAGCTCAGGATCGGGCTCATAGGATTGGTCAGAAGAAAGAAGTTCAAGTTTTCAGATTCTGCTCAGAGTTTAC TATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTCGCACTTGATGCTCTGGTGATTCAGCAAGGGCGTTTAGCTG AGCAGAAGACTGTAAATAAGGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGT ACAATCACTGATGAGGACATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAGAA ATTTACTGAAGATGCTATCAAATTCAAGATGGATGACCGTATCTGCTGA
Protein sequence (LotjaGi4g1v0345700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNRGKGRLNYLLQQTELFAHFAKADQSSSQKKGKGRGRHASKVTEEEEDEEYLKEEEGGSANTRLMTQPSCIQGKMRDY QLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEFKGITGPHMVVAPKSTLGNWMNEIRRFCPVIRAIKFLGN PDERRHIREELLVAGKFDVCVTSFEMVIKEKSAFRRFNWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNN LHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQY YRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIF SQMTRLLDILEDYLMFRGYKYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQV DLQAQDRAHRIGQKKEVQVFRFCSEFTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDS TITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDRIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 599 | 599 | 0.0 | – | |
| PANTHER | 1 | 599 | 599 | 0.0 | – | |
| MobiDBLite | 24 | 61 | 38 | - | – | |
| SUPERFAMILY | 64 | 292 | 229 | 3.44E-61 | ||
| SMART | 73 | 265 | 193 | 6.1E-37 | ||
| CDD | 74 | 294 | 221 | 2.29342E-143 | – | |
| Gene3D | 78 | 293 | 216 | 1.5E-73 | ||
| ProSiteProfiles | 89 | 254 | 166 | 25.454 | ||
| Pfam | 90 | 357 | 268 | 5.8E-73 | ||
| SUPERFAMILY | 294 | 574 | 281 | 3.13E-74 | ||
| Gene3D | 298 | 590 | 293 | 2.0E-123 | – | |
| CDD | 378 | 503 | 126 | 1.31906E-54 | – | |
| Pfam | 380 | 492 | 113 | 8.4E-20 | ||
| ProSiteProfiles | 382 | 533 | 152 | 20.164 | ||
| SMART | 408 | 492 | 85 | 1.5E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0345700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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