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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0360000 |
| Transcript ID | LotjaGi4g1v0360000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT1G30120.1 pyruvate dehydrogenase E1 beta; Swiss-Prot: sp|Q9C6Z3|ODPB2_ARATH Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic; TrEMBL-Plants: tr|I3SEX4|I3SEX4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0360000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73901706..73902977) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTTGACTCAACAAATGATTCGCCAAACCCCATGAGTTAGTTAATTTTATGGTAATATTTATTTTGAATTTTAGTTGA TTTTATAAGAACATTAGTAAATATATGACTGGAAGGTAAAAGTAGTTACTCTGGGCCACATACTTGTCACACTTAATTCA GAACATTAGTAAATATATGACTGGTTGAAGCTACTAAAAACATGCTTTGGCATTCTTTTTTTCTCTCTTATTAGCTTCAC TTATTGTAGAGTTATGATCAATAACAATGGAATTGATGAGATATGCATCTCATTTTCAGGCATGAACTTCTCCTTTTTGA AGCCCTACGTGAAGGTTTGGAAGAAGAAATGGAGAGGGATCCTAATGTATGCGTTATGGGTGAAGATGTAGGTCATTATG GAGGATCTTACAAAGTGACTAAAGACCTGGCCAACAAGTTTGGGGACCTGAGAGTTCTGGACACCCCTATTGCTGAGAAT GCCTTCACCGGCATGGGCATTGGAGCTGCCATGACTGGTCTAAGGCCAGTTATTGAGGGCATGAACATGGGATTCCTACT TCTCGCATTCAACCAAATCTCTAACAATTGTGGGATGCTGCATTACACATCTGGAGGCCAGTTCAAAATCCCAGTTGTCA TTCGTGGACCTGGTGGAGTCGGGCGGCAACTCGGAGCCGAGCACTCACAGAGACTGGAGTCTTATTTTCAGTCAATCCCT GGAATCCAGATGGTGGCTTGCTCAACCCCTTACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGATAACCCCGT GATCCTTTTTGAACATGTTTTGCTTTACAACCTCAAGGAGAGAATTCCAGATGAAGAGTATGTGTTGTCACTTGAAGAAG CCGAGATGGTTAGACCCGGGGAGCATGTCACGATATTAACCTATTCCAGGATGAGGTACCATGTCATGCAAGCTGCAAAG ACATTGGTGAACAAGGGGTATGACCCTGAAGTAATTGATATCAGGTCATTGAAACCGTTTGATCTTCACACAATTGGGAA TTCAGTAAAGAAGACACATAGGGTGCTGATTGTTGAAGAGTGCATGAGGACTGGTGGAATTGGTGCTAGTCTGACTGCTG CTATTAGTGAAAATTTCAATGACTATTTGGATGCTCCCATCGTTTGTTTGTCATCTCAGGACGTGCCAACCCCATATGCT GGACCGTTGGAAGAAATGACGGTGGTTCAGCCTGCTCAGATTGTGACAGCAGTTGAGCAGCTCTGCCAGTGA
CDS sequence (LotjaGi4g1v0360000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAAAAGTAGTTACTCTGGGCATGAACTTCTCCTTTTTGAAGCCCTACGTGAAGGTTTGGAAGAAGAAATGGAGAG GGATCCTAATGTATGCGTTATGGGTGAAGATGTAGGTCATTATGGAGGATCTTACAAAGTGACTAAAGACCTGGCCAACA AGTTTGGGGACCTGAGAGTTCTGGACACCCCTATTGCTGAGAATGCCTTCACCGGCATGGGCATTGGAGCTGCCATGACT GGTCTAAGGCCAGTTATTGAGGGCATGAACATGGGATTCCTACTTCTCGCATTCAACCAAATCTCTAACAATTGTGGGAT GCTGCATTACACATCTGGAGGCCAGTTCAAAATCCCAGTTGTCATTCGTGGACCTGGTGGAGTCGGGCGGCAACTCGGAG CCGAGCACTCACAGAGACTGGAGTCTTATTTTCAGTCAATCCCTGGAATCCAGATGGTGGCTTGCTCAACCCCTTACAAT GCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGATAACCCCGTGATCCTTTTTGAACATGTTTTGCTTTACAACCTCAA GGAGAGAATTCCAGATGAAGAGTATGTGTTGTCACTTGAAGAAGCCGAGATGGTTAGACCCGGGGAGCATGTCACGATAT TAACCTATTCCAGGATGAGGTACCATGTCATGCAAGCTGCAAAGACATTGGTGAACAAGGGGTATGACCCTGAAGTAATT GATATCAGGTCATTGAAACCGTTTGATCTTCACACAATTGGGAATTCAGTAAAGAAGACACATAGGGTGCTGATTGTTGA AGAGTGCATGAGGACTGGTGGAATTGGTGCTAGTCTGACTGCTGCTATTAGTGAAAATTTCAATGACTATTTGGATGCTC CCATCGTTTGTTTGTCATCTCAGGACGTGCCAACCCCATATGCTGGACCGTTGGAAGAAATGACGGTGGTTCAGCCTGCT CAGATTGTGACAGCAGTTGAGCAGCTCTGCCAGTGA
Protein sequence (LotjaGi4g1v0360000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKSSYSGHELLLFEALREGLEEEMERDPNVCVMGEDVGHYGGSYKVTKDLANKFGDLRVLDTPIAENAFTGMGIGAAMT GLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYN AKGLMKAAIRSDNPVILFEHVLLYNLKERIPDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVI DIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAISENFNDYLDAPIVCLSSQDVPTPYAGPLEEMTVVQPA QIVTAVEQLCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 331 | 325 | 5.8E-232 | – | |
| PANTHER | 7 | 331 | 325 | 5.8E-232 | ||
| Gene3D | 9 | 198 | 190 | 6.4E-76 | – | |
| SMART | 11 | 186 | 176 | 2.5E-55 | ||
| SUPERFAMILY | 14 | 209 | 196 | 3.27E-64 | ||
| CDD | 15 | 181 | 167 | 4.12912E-104 | – | |
| Pfam | 15 | 185 | 171 | 3.3E-47 | ||
| SUPERFAMILY | 194 | 330 | 137 | 1.83E-36 | ||
| Gene3D | 199 | 331 | 133 | 8.7E-39 | ||
| Pfam | 201 | 322 | 122 | 5.7E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Pyruvate dehydrogenase (acetyl-transferring) activity | Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2. | ||
| Biological process | Acetyl-CoA biosynthetic process from pyruvate | The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. |
Expression pattern of LotjaGi4g1v0360000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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