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LotjaGi4g1v0371500.3

Overview

Field Value
Gene ID LotjaGi4g1v0371500
Transcript ID LotjaGi4g1v0371500.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Adenosylhomocysteinase; TAIR: AT4G13940.3 S-adenosyl-L-homocysteine hydrolase; Swiss-Prot: sp|O23255|SAHH1_ARATH Adenosylhomocysteinase 1; TrEMBL-Plants: tr|F4JTV4|F4JTV4_ARATH Adenosylhomocysteinase; Found in the gene: LotjaGi4g1v0371500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:75089818..75091814) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTTTGTTGGTCGAGAAAACCACATCTGGCCGCGAGTACAAGGTCAAGGACCTCTCTCAGGCCGACTTCGGCCGCCT CGAGCTCGAGCTCGCCGAGGTCGAGATGCCCGGCCTCATGGCCTGCCGTACCGAGTTCGGCCCTGCTCAGCCCTTCAAAG GCGCTAGAATCACCGGATCCCTCCACATGACCATTCAAACCGCCGTCCTCATTGAAACCCTCACCGCCCTCGGCGCCGAG GTTCGCTGGTGCTCCTGCAACATCTTCTCCACCCAGGACCACGCCGCCGCTGCCATCGCCCGCGATAGCGCTGCGGTTTT CGCCTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACCGAGCGTGCCCTCGACTGGGGTCCCGGTGGTGGTCCCG ATCTCATCGTTGATGATGGAGGTGACGCTACCCTCCTCATCCACGAGGGGGTTAAGGCTGAGGAGGTGTTCGAGAAGACC GGTGAGCTTCCCGACCCGACTTCCACCGACAACCCTGAGTTCCAGATCGTGCTTACCATCATCAGGGATGGGTTGAAGAC TGACTCCCATAGGTACCGCAAGATGAAGGAGAGGCTCGTCGGTGTCTCGGAGGAGACCACCACCGGAGTCAAGAGGCTTT ACCAGATGCAGGCCAATGGAACTCTCTTGTTCCCTGCTATCAATGTCAATGACTCTGTCACCAAGAGCAAGGTCTGTTTT CTCTCCCCTTTTTGCTAGATCTGTTTGTGTTTCTCAATTTTGGATCAAGGGTTTGGTTTTTGTTTTCGTTGTAGATTCAG ATCTGTTTTGTCTTGTGTTTTTTGCTGTTCGAAATTCAGATCCACCAAGTGTTTGATGTATGTCTTGAATGAAGTTTGAT CTGTATATTTGTATGCAATTGATATTGATAGGCTTCAGATCTTAAGAAACAACAAATGGGTCATTGAATTTTCATCTAAT ATACTTGTATTGATTGCTGATGATTCTTTAGGGTCAGTGGGTGTTTGATATTTGTCATGAATGAAGTTTTGTCTGTGTAT AGTAGTGTGCAATTGATATGGTTTTGCTTCAGATCTTAAGAAACAACAAGTTGGTCATTGGATTTTCATGTACGTTACTT GTATTGATTGATCATGATTCTTGTGGTAATTGGATCTGGTTAATTATATGTCGGTTTTGTTTGTTGTTGTTGTGTCCTTT TCTTGTCTAACAGTTTGTTTTTTGTGTATTTGATATGTTGGTTGTAACAGTTTGACAACTTGTATGGATGCCGTCACTCT CTCCCTGATGGTCTGATGAGGGCTACCGATATTATGATTGCTGGGAAGGTGGCTGTTGTGGCTGGATATGGAGATGTCGG CAAGGGTTGTGCTGCTGCTTTGAAACAAGCTGGTGCTCGTGTCATTGTGACTGAGATTGATCCCATCTGTGCCCTTCAGG CTCTCATGGAAGGTCTTCAGGTTCTGACCCTGGAGGATGTTGTCTCTGAGGCTGATATCTTTGTCACCACCACCGGTAAC AAGGACATCATCATGGTTGACCACATGAGGAAGATGAAGAACAATGCCATTGTCTGCAACATTGGTCACTTTGACAATGA AATCGACATGCTTGGTCTTGAGAGCTACCCTGGTGTGAAGCGCATCACCATCAAACCTCAAACTGATAGGTTCGTCTTCC CCGAGACCAACACCGGCATCATTGTCTTGGCCGAGGGTCGTCTGATGAACTTGGGCTGCGCCACAGGGCACCCCAGTTTC GTGATGTCCTGCTCCTTCACCAACCAGGTCATTGCTCAGCTTGAGCTGTGGAATGAGAGGAACTCTGGCAAGTACAAGAA GGAGGTTTACGTTTTGCCCAAGCATCTTGATGAGAAGGTGGCTGCACTTCACCTTGGCAAGCTTGGAGCTAGGCTCACCA AGCTCAGCAAGGATCAAGCTGATTACATCAGTGTGCCTGTTGAGGGCCCATACAAGCCTCTTCACTACAGGTACTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0371500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTTGTTGGTCGAGAAAACCACATCTGGCCGCGAGTACAAGGTCAAGGACCTCTCTCAGGCCGACTTCGGCCGCCT CGAGCTCGAGCTCGCCGAGGTCGAGATGCCCGGCCTCATGGCCTGCCGTACCGAGTTCGGCCCTGCTCAGCCCTTCAAAG GCGCTAGAATCACCGGATCCCTCCACATGACCATTCAAACCGCCGTCCTCATTGAAACCCTCACCGCCCTCGGCGCCGAG GTTCGCTGGTGCTCCTGCAACATCTTCTCCACCCAGGACCACGCCGCCGCTGCCATCGCCCGCGATAGCGCTGGGGTTAA GGCTGAGGAGGTGTTCGAGAAGACCGGTGAGCTTCCCGACCCGACTTCCACCGACAACCCTGAGTTCCAGATCGTGCTTA CCATCATCAGGGATGGGTTGAAGACTGACTCCCATAGGTACCGCAAGATGAAGGAGAGGCTCGTCGGTGTCTCGGAGGAG ACCACCACCGGAGTCAAGAGGCTTTACCAGATGCAGGCCAATGGAACTCTCTTGTTCCCTGCTATCAATGTCAATGACTC TGTCACCAAGAGCAAGTTTGACAACTTGTATGGATGCCGTCACTCTCTCCCTGATGGTCTGATGAGGGCTACCGATATTA TGATTGCTGGGAAGGTGGCTGTTGTGGCTGGATATGGAGATGTCGGCAAGGGTTGTGCTGCTGCTTTGAAACAAGCTGGT GCTCGTGTCATTGTGACTGAGATTGATCCCATCTGTGCCCTTCAGGCTCTCATGGAAGGTCTTCAGGTTCTGACCCTGGA GGATGTTGTCTCTGAGGCTGATATCTTTGTCACCACCACCGGTAACAAGGACATCATCATGGTTGACCACATGAGGAAGA TGAAGAACAATGCCATTGTCTGCAACATTGGTCACTTTGACAATGAAATCGACATGCTTGGTCTTGAGAGCTACCCTGGT GTGAAGCGCATCACCATCAAACCTCAAACTGATAGGTTCGTCTTCCCCGAGACCAACACCGGCATCATTGTCTTGGCCGA GGGTCGTCTGATGAACTTGGGCTGCGCCACAGGGCACCCCAGTTTCGTGATGTCCTGCTCCTTCACCAACCAGGTCATTG CTCAGCTTGAGCTGTGGAATGAGAGGAACTCTGGCAAGTACAAGAAGGAGGTTTACGTTTTGCCCAAGCATCTTGATGAG AAGGTGGCTGCACTTCACCTTGGCAAGCTTGGAGCTAGGCTCACCAAGCTCAGCAAGGATCAAGCTGATTACATCAGTGT GCCTGTTGAGGGCCCATACAAGCCTCTTCACTACAGGTACTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0371500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALLVEKTTSGREYKVKDLSQADFGRLELELAEVEMPGLMACRTEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAE VRWCSCNIFSTQDHAAAAIARDSAGVKAEEVFEKTGELPDPTSTDNPEFQIVLTIIRDGLKTDSHRYRKMKERLVGVSEE TTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDIMIAGKVAVVAGYGDVGKGCAAALKQAG ARVIVTEIDPICALQALMEGLQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLESYPG VKRITIKPQTDRFVFPETNTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNERNSGKYKKEVYVLPKHLDE KVAALHLGKLGARLTKLSKDQADYISVPVEGPYKPLHYRY
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23420:SF12
1 108 108 1.7E-269 –
Gene3D
G3DSA:3.40.50.1480
1 105 105 2.3E-49
IPR042172
PANTHER
PTHR23420
1 108 108 1.7E-269
IPR000043
PIRSF
PIRSF001109
2 440 439 2.6E-167
IPR000043
SUPERFAMILY
SSF52283
12 440 429 2.49E-93 –
Pfam
PF05221
13 108 96 2.2E-48
IPR000043
SMART
SM00996
13 439 427 3.1E-269
IPR000043
TIGRFAM
TIGR00936
14 432 419 8.0E-164
IPR000043
CDD
cd00401
23 428 406 0.0
IPR000043
ProSitePatterns
PS00738
85 99 15 -
IPR020082
Gene3D
G3DSA:3.40.50.1480
106 440 335 1.0E-174
IPR042172
Pfam
PF05221
117 439 323 1.4E-65
IPR000043
PANTHER
PTHR23420
129 440 312 1.7E-269
IPR000043
PANTHER
PTHR23420:SF12
129 440 312 1.7E-269 –
Pfam
PF00670
195 358 164 1.7E-82
IPR015878
SMART
SM00997
195 358 164 1.8E-104
IPR015878
SUPERFAMILY
SSF51735
195 358 164 1.32E-77
IPR036291
Gene3D
G3DSA:3.40.50.720
198 359 162 1.0E-174 –
ProSitePatterns
PS00739
217 234 18 -
IPR020082

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004013
Molecular function Adenosylhomocysteinase activity Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenosine + L-homocysteine.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0371500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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